JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	SAS	tseq	genename	chr	start	end
SLFN5_chr17_35238072_35278655	0/0	t0090	7876	1	0	0	1	0	copy fasta	SLFN5	chr17	35238072	35278655
SLFN5_chr17_35238072_35278655	0/0	t0091	7878	1	0	0	1	0	copy fasta	SLFN5	chr17	35238072	35278655
SLFN5_chr17_35238072_35278655	0/0	t0092	7878	1	0	0	1	0	copy fasta	SLFN5	chr17	35238072	35278655
SLFN5_chr17_35238072_35278655	0/0	t0093	7880	1	0	1	0	0	copy fasta	SLFN5	chr17	35238072	35278655
SLFN5_chr17_35238072_35278655	0/0	t0094	7880	1	0	0	1	0	copy fasta	SLFN5	chr17	35238072	35278655
SLFN5_chr17_35238072_35278655	0/0	t0095	7882	1	1	0	0	0	copy fasta	SLFN5	chr17	35238072	35278655
SLFN5_chr17_35238072_35278655	0/0	t0096	7881	1	0	1	0	0	copy fasta	SLFN5	chr17	35238072	35278655
SLFN5_chr17_35238072_35278655	0/0	t0097	7885	1	1	0	0	0	copy fasta	SLFN5	chr17	35238072	35278655
SLFN5_chr17_35238072_35278655	0/0	t0098	7879	1	1	0	0	0	copy fasta	SLFN5	chr17	35238072	35278655
SLFN5_chr17_35238072_35278655	0/0	t0099	7878	1	0	0	1	0	copy fasta	SLFN5	chr17	35238072	35278655
SLFN5_chr17_35238072_35278655	0/0	t0100	7878	1	0	0	1	0	copy fasta	SLFN5	chr17	35238072	35278655
SLFN5_chr17_35238072_35278655	0/0	t0101	7881	1	1	0	0	0	copy fasta	SLFN5	chr17	35238072	35278655
SLFN5_chr17_35238072_35278655	0/0	t0102	7881	1	1	0	0	0	copy fasta	SLFN5	chr17	35238072	35278655
SLFN5_chr17_35238072_35278655	0/0	t0103	7881	1	1	0	0	0	copy fasta	SLFN5	chr17	35238072	35278655
SLFN5_chr17_35238072_35278655	0/0	t0104	7881	1	1	0	0	0	copy fasta	SLFN5	chr17	35238072	35278655
SLFN5_chr17_35238072_35278655	0/0	t0105	7883	1	0	0	1	0	copy fasta	SLFN5	chr17	35238072	35278655
SLFN5_chr17_35238072_35278655	0/0	t0106	7883	1	1	0	0	0	copy fasta	SLFN5	chr17	35238072	35278655
SLFN5_chr17_35238072_35278655	0/0	t0107	7883	1	1	0	0	0	copy fasta	SLFN5	chr17	35238072	35278655
SLFN5_chr17_35238072_35278655	0/0	t0108	7884	1	1	0	0	0	copy fasta	SLFN5	chr17	35238072	35278655
SLFN5_chr17_35238072_35278655	0/0	t0109	7883	1	1	0	0	0	copy fasta	SLFN5	chr17	35238072	35278655
SLFN5_chr17_35238072_35278655	0/0	t0110	7881	1	0	1	0	0	copy fasta	SLFN5	chr17	35238072	35278655
SLFN5_chr17_35238072_35278655	0/0	t0111	7881	1	0	0	1	0	copy fasta	SLFN5	chr17	35238072	35278655
SLFN5_chr17_35238072_35278655	0/0	t0112	7881	1	1	0	0	0	copy fasta	SLFN5	chr17	35238072	35278655
SLFN5_chr17_35238072_35278655	0/0	t0113	7881	1	0	1	0	0	copy fasta	SLFN5	chr17	35238072	35278655
SLFN5_chr17_35238072_35278655	0/0	t0114	7881	1	1	0	0	0	copy fasta	SLFN5	chr17	35238072	35278655
SLFN5_chr17_35238072_35278655	0/0	t0115	7880	1	0	0	1	0	copy fasta	SLFN5	chr17	35238072	35278655
SLFN5_chr17_35238072_35278655	0/0	t0116	7884	1	0	1	0	0	copy fasta	SLFN5	chr17	35238072	35278655
SLFN5_chr17_35238072_35278655	0/0	t0117	7885	1	1	0	0	0	copy fasta	SLFN5	chr17	35238072	35278655
SLFN5_chr17_35238072_35278655	0/0	t0118	7886	1	1	0	0	0	copy fasta	SLFN5	chr17	35238072	35278655
SLFN5_chr17_35238072_35278655	0/0	t0119	7884	1	0	0	1	0	copy fasta	SLFN5	chr17	35238072	35278655
SLFN5_chr17_35238072_35278655	0/0	t0120	7885	1	0	0	1	0	copy fasta	SLFN5	chr17	35238072	35278655
SLFN5_chr17_35238072_35278655	0/0	t0121	7886	1	0	1	0	0	copy fasta	SLFN5	chr17	35238072	35278655
SLFN5_chr17_35238072_35278655	0/0	t0122	7880	1	0	1	0	0	copy fasta	SLFN5	chr17	35238072	35278655
SLFN5_chr17_35238072_35278655	0/0	t0123	7881	1	0	0	1	0	copy fasta	SLFN5	chr17	35238072	35278655
SLFN5_chr17_35238072_35278655	0/0	t0124	7882	1	0	0	0	1	copy fasta	SLFN5	chr17	35238072	35278655
SLFN5_chr17_35238072_35278655	0/0	t0125	7888	1	0	0	1	0	copy fasta	SLFN5	chr17	35238072	35278655
SLFN5_chr17_35238072_35278655	0/0	t0126	7887	1	0	0	1	0	copy fasta	SLFN5	chr17	35238072	35278655
SLFN5_chr17_35238072_35278655	0/0	t0127	7889	1	0	0	1	0	copy fasta	SLFN5	chr17	35238072	35278655
SLFN5_chr17_35238072_35278655	0/0	t0128	7890	1	0	0	0	1	copy fasta	SLFN5	chr17	35238072	35278655
SLFN5_chr17_35238072_35278655	0/0	t0129	7889	1	1	0	0	0	copy fasta	SLFN5	chr17	35238072	35278655
SLFN5_chr17_35238072_35278655	0/0	t0130	7890	1	1	0	0	0	copy fasta	SLFN5	chr17	35238072	35278655
SLFN5_chr17_35238072_35278655	0/0	t0131	7889	1	1	0	0	0	copy fasta	SLFN5	chr17	35238072	35278655
SLFN5_chr17_35238072_35278655	0/0	t0132	7889	1	1	0	0	0	copy fasta	SLFN5	chr17	35238072	35278655
SLFN5_chr17_35238072_35278655	0/0	t0133	7894	1	1	0	0	0	copy fasta	SLFN5	chr17	35238072	35278655
SLFN5_chr17_35238072_35278655	0/0	t0134	7894	1	1	0	0	0	copy fasta	SLFN5	chr17	35238072	35278655
SLFN5_chr17_35238072_35278655	0/0	t0135	7896	1	0	1	0	0	copy fasta	SLFN5	chr17	35238072	35278655
SLFN5_chr17_35238072_35278655	0/0	t0136	7897	1	1	0	0	0	copy fasta	SLFN5	chr17	35238072	35278655
SLFN5_chr17_35238072_35278655	0/0	t0137	7898	1	0	0	0	1	copy fasta	SLFN5	chr17	35238072	35278655
SLFN5_chr17_35238072_35278655	0/0	t0138	7895	1	0	0	0	1	copy fasta	SLFN5	chr17	35238072	35278655
SLFN5_chr17_35238072_35278655	0/0	t0139	7895	1	1	0	0	0	copy fasta	SLFN5	chr17	35238072	35278655