JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SLFN5_chr17_35238072_35278655	0/0	t0140	7898	1	0	1	0	0	0	copy fasta	SLFN5	chr17	35238072	35278655
SLFN5_chr17_35238072_35278655	0/0	t0141	7904	1	1	0	0	0	0	copy fasta	SLFN5	chr17	35238072	35278655
SLFN5_chr17_35238072_35278655	0/0	t0142	7899	1	0	0	0	0	1	copy fasta	SLFN5	chr17	35238072	35278655
SLFN5_chr17_35238072_35278655	0/0	t0143	7884	1	1	0	0	0	0	copy fasta	SLFN5	chr17	35238072	35278655
SLFN5_chr17_35238072_35278655	0/0	t0144	7884	1	0	0	0	0	1	copy fasta	SLFN5	chr17	35238072	35278655
SLFN5_chr17_35238072_35278655	0/0	t0145	7884	1	0	0	1	0	0	copy fasta	SLFN5	chr17	35238072	35278655
SLFN5_chr17_35238072_35278655	0/0	t0146	7884	1	1	0	0	0	0	copy fasta	SLFN5	chr17	35238072	35278655
SLFN5_chr17_35238072_35278655	0/0	t0147	7886	1	0	0	0	1	0	copy fasta	SLFN5	chr17	35238072	35278655
SLFN5_chr17_35238072_35278655	0/0	t0148	7884	1	1	0	0	0	0	copy fasta	SLFN5	chr17	35238072	35278655
SLFN5_chr17_35238072_35278655	0/0	t0149	7885	1	1	0	0	0	0	copy fasta	SLFN5	chr17	35238072	35278655
SLFN5_chr17_35238072_35278655	0/0	t0150	7884	1	0	0	1	0	0	copy fasta	SLFN5	chr17	35238072	35278655
SLFN5_chr17_35238072_35278655	0/0	t0151	7888	1	0	0	1	0	0	copy fasta	SLFN5	chr17	35238072	35278655
SLFN5_chr17_35238072_35278655	0/0	t0152	7889	1	0	0	1	0	0	copy fasta	SLFN5	chr17	35238072	35278655
SLFNL1_chr1_41010597_41026725	1/0	t0001	738	263	67	34	121	9	31	copy fasta	SLFNL1	chr1	41010597	41026725
SLFNL1_chr1_41010597_41026725	0/0	t0002	738	71	1	19	43	3	5	copy fasta	SLFNL1	chr1	41010597	41026725
SLFNL1_chr1_41010597_41026725	0/0	t0003	738	39	2	3	27	2	5	copy fasta	SLFNL1	chr1	41010597	41026725
SLFNL1_chr1_41010597_41026725	0/0	t0004	738	24	1	15	4	2	2	copy fasta	SLFNL1	chr1	41010597	41026725
SLFNL1_chr1_41010597_41026725	0/0	t0005	738	8	8	0	0	0	0	copy fasta	SLFNL1	chr1	41010597	41026725
SLFNL1_chr1_41010597_41026725	0/0	t0006	738	7	0	0	7	0	0	copy fasta	SLFNL1	chr1	41010597	41026725
SLFNL1_chr1_41010597_41026725	0/1	t0007	738	5	1	2	0	0	1	copy fasta	SLFNL1	chr1	41010597	41026725
SLFNL1_chr1_41010597_41026725	0/0	t0008	738	3	3	0	0	0	0	copy fasta	SLFNL1	chr1	41010597	41026725
SLFNL1_chr1_41010597_41026725	0/0	t0009	738	3	0	1	0	2	0	copy fasta	SLFNL1	chr1	41010597	41026725
SLFNL1_chr1_41010597_41026725	0/0	t0010	738	2	0	0	2	0	0	copy fasta	SLFNL1	chr1	41010597	41026725
SLFNL1_chr1_41010597_41026725	0/0	t0011	738	1	1	0	0	0	0	copy fasta	SLFNL1	chr1	41010597	41026725
SLFNL1_chr1_41010597_41026725	0/0	t0012	738	1	1	0	0	0	0	copy fasta	SLFNL1	chr1	41010597	41026725
SLFNL1_chr1_41010597_41026725	0/0	t0013	738	1	1	0	0	0	0	copy fasta	SLFNL1	chr1	41010597	41026725
SLFNL1_chr1_41010597_41026725	0/0	t0014	738	1	1	0	0	0	0	copy fasta	SLFNL1	chr1	41010597	41026725
SLFNL1_chr1_41010597_41026725	0/0	t0015	738	1	1	0	0	0	0	copy fasta	SLFNL1	chr1	41010597	41026725
SLIRP_chr14_77703103_77722598	1/1	t0001	47	399	96	64	181	18	38	copy fasta	SLIRP	chr14	77703103	77722598
SLIRP_chr14_77703103_77722598	0/0	t0002	47	5	0	2	3	0	0	copy fasta	SLIRP	chr14	77703103	77722598
SLIT1_chr10_96993038_97190959	1/1	t0001	3360	162	48	30	56	4	22	copy fasta	SLIT1	chr10	96993038	97190959
SLIT1_chr10_96993038_97190959	0/0	t0002	3367	35	6	3	20	0	6	copy fasta	SLIT1	chr10	96993038	97190959
SLIT1_chr10_96993038_97190959	0/0	t0003	3364	10	9	0	1	0	0	copy fasta	SLIT1	chr10	96993038	97190959
SLIT1_chr10_96993038_97190959	0/0	t0004	3360	7	7	0	0	0	0	copy fasta	SLIT1	chr10	96993038	97190959
SLIT1_chr10_96993038_97190959	0/0	t0005	3360	6	0	2	0	2	2	copy fasta	SLIT1	chr10	96993038	97190959
SLIT1_chr10_96993038_97190959	0/0	t0006	3363	5	0	1	0	4	0	copy fasta	SLIT1	chr10	96993038	97190959
SLIT1_chr10_96993038_97190959	0/0	t0007	3360	3	2	1	0	0	0	copy fasta	SLIT1	chr10	96993038	97190959
SLIT1_chr10_96993038_97190959	0/0	t0008	3363	3	3	0	0	0	0	copy fasta	SLIT1	chr10	96993038	97190959
SLIT1_chr10_96993038_97190959	0/0	t0009	3364	3	3	0	0	0	0	copy fasta	SLIT1	chr10	96993038	97190959
SLIT1_chr10_96993038_97190959	0/0	t0010	3367	2	0	0	2	0	0	copy fasta	SLIT1	chr10	96993038	97190959
SLIT1_chr10_96993038_97190959	0/0	t0011	3364	2	2	0	0	0	0	copy fasta	SLIT1	chr10	96993038	97190959
SLIT1_chr10_96993038_97190959	0/0	t0012	3360	1	0	0	0	0	1	copy fasta	SLIT1	chr10	96993038	97190959
SLIT1_chr10_96993038_97190959	0/0	t0013	3360	1	1	0	0	0	0	copy fasta	SLIT1	chr10	96993038	97190959
SLIT1_chr10_96993038_97190959	0/0	t0014	3360	1	1	0	0	0	0	copy fasta	SLIT1	chr10	96993038	97190959
SLIT1_chr10_96993038_97190959	0/0	t0015	3360	1	1	0	0	0	0	copy fasta	SLIT1	chr10	96993038	97190959
SLIT1_chr10_96993038_97190959	0/0	t0016	3367	1	0	0	0	0	1	copy fasta	SLIT1	chr10	96993038	97190959
SLIT1_chr10_96993038_97190959	0/0	t0017	3367	1	1	0	0	0	0	copy fasta	SLIT1	chr10	96993038	97190959
SLIT1_chr10_96993038_97190959	0/0	t0018	3367	1	1	0	0	0	0	copy fasta	SLIT1	chr10	96993038	97190959
SLIT1_chr10_96993038_97190959	0/0	t0019	3360	1	0	0	1	0	0	copy fasta	SLIT1	chr10	96993038	97190959
SLIT1_chr10_96993038_97190959	0/0	t0020	3360	1	0	0	1	0	0	copy fasta	SLIT1	chr10	96993038	97190959