JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SLN_chr11_107702378_107717056	0/0	t0003	627	7	7	0	0	0	0	copy fasta	SLN	chr11	107702378	107717056
SLN_chr11_107702378_107717056	0/0	t0004	627	1	0	0	1	0	0	copy fasta	SLN	chr11	107702378	107717056
SLPI_chr20_45247239_45259564	1/1	t0001	198	375	75	78	168	10	42	copy fasta	SLPI	chr20	45247239	45259564
SLPI_chr20_45247239_45259564	0/0	t0002	198	22	20	2	0	0	0	copy fasta	SLPI	chr20	45247239	45259564
SLPI_chr20_45247239_45259564	0/0	t0003	198	1	1	0	0	0	0	copy fasta	SLPI	chr20	45247239	45259564
SLTM_chr15_58874050_58938679	1/1	t0001	1064	266	66	56	109	10	23	copy fasta	SLTM	chr15	58874050	58938679
SLTM_chr15_58874050_58938679	0/0	t0002	1064	113	23	10	58	7	15	copy fasta	SLTM	chr15	58874050	58938679
SLTM_chr15_58874050_58938679	0/0	t0003	1064	4	1	2	0	1	0	copy fasta	SLTM	chr15	58874050	58938679
SLTM_chr15_58874050_58938679	0/0	t0004	1064	2	2	0	0	0	0	copy fasta	SLTM	chr15	58874050	58938679
SLTM_chr15_58874050_58938679	0/0	t0005	1064	1	0	0	1	0	0	copy fasta	SLTM	chr15	58874050	58938679
SLU7_chr5_160396641_160424081	0/0	t0001	1722	150	35	29	66	6	14	copy fasta	SLU7	chr5	160396641	160424081
SLU7_chr5_160396641_160424081	1/0	t0002	1720	96	7	12	71	2	3	copy fasta	SLU7	chr5	160396641	160424081
SLU7_chr5_160396641_160424081	0/0	t0003	1722	92	17	25	34	2	14	copy fasta	SLU7	chr5	160396641	160424081
SLU7_chr5_160396641_160424081	0/0	t0004	1720	55	1	1	50	0	3	copy fasta	SLU7	chr5	160396641	160424081
SLU7_chr5_160396641_160424081	0/0	t0005	1722	26	12	6	2	1	5	copy fasta	SLU7	chr5	160396641	160424081
SLU7_chr5_160396641_160424081	0/0	t0006	1723	9	7	2	0	0	0	copy fasta	SLU7	chr5	160396641	160424081
SLU7_chr5_160396641_160424081	0/0	t0007	1722	6	0	0	6	0	0	copy fasta	SLU7	chr5	160396641	160424081
SLU7_chr5_160396641_160424081	0/0	t0008	1722	6	5	1	0	0	0	copy fasta	SLU7	chr5	160396641	160424081
SLU7_chr5_160396641_160424081	0/0	t0009	1722	4	4	0	0	0	0	copy fasta	SLU7	chr5	160396641	160424081
SLU7_chr5_160396641_160424081	0/0	t0010	1722	3	0	2	0	0	1	copy fasta	SLU7	chr5	160396641	160424081
SLU7_chr5_160396641_160424081	0/0	t0011	1722	2	0	1	0	1	0	copy fasta	SLU7	chr5	160396641	160424081
SLU7_chr5_160396641_160424081	0/0	t0012	1722	2	0	2	0	0	0	copy fasta	SLU7	chr5	160396641	160424081
SLU7_chr5_160396641_160424081	0/0	t0013	1722	1	1	0	0	0	0	copy fasta	SLU7	chr5	160396641	160424081
SLU7_chr5_160396641_160424081	0/0	t0014	1722	1	0	1	0	0	0	copy fasta	SLU7	chr5	160396641	160424081
SLU7_chr5_160396641_160424081	0/0	t0015	1722	1	0	0	0	0	1	copy fasta	SLU7	chr5	160396641	160424081
SLU7_chr5_160396641_160424081	0/1	t0016	1722	1	0	0	0	0	0	copy fasta	SLU7	chr5	160396641	160424081
SLU7_chr5_160396641_160424081	0/0	t0017	1722	1	0	1	0	0	0	copy fasta	SLU7	chr5	160396641	160424081
SLU7_chr5_160396641_160424081	0/0	t0018	1720	1	0	1	0	0	0	copy fasta	SLU7	chr5	160396641	160424081
SLU7_chr5_160396641_160424081	0/0	t0019	1722	1	1	0	0	0	0	copy fasta	SLU7	chr5	160396641	160424081
SLU7_chr5_160396641_160424081	0/0	t0020	1722	1	1	0	0	0	0	copy fasta	SLU7	chr5	160396641	160424081
SLU7_chr5_160396641_160424081	0/0	t0021	1722	1	0	0	1	0	0	copy fasta	SLU7	chr5	160396641	160424081
SLU7_chr5_160396641_160424081	0/0	t0022	1720	1	1	0	0	0	0	copy fasta	SLU7	chr5	160396641	160424081
SLU7_chr5_160396641_160424081	0/0	t0023	1722	1	0	0	0	0	1	copy fasta	SLU7	chr5	160396641	160424081
SLURP1_chr8_142735949_142747406	1/1	t0001	216	398	93	71	178	17	37	copy fasta	SLURP1	chr8	142735949	142747406
SLURP1_chr8_142735949_142747406	0/0	t0002	216	2	0	0	0	1	1	copy fasta	SLURP1	chr8	142735949	142747406
SLURP1_chr8_142735949_142747406	0/0	t0003	216	2	1	1	0	0	0	copy fasta	SLURP1	chr8	142735949	142747406
SLURP2_chr8_142759338_142774828	0/0	t0001	290	228	48	62	79	14	25	copy fasta	SLURP2	chr8	142759338	142774828
SLURP2_chr8_142759338_142774828	0/1	t0002	290	158	17	17	104	2	17	copy fasta	SLURP2	chr8	142759338	142774828
SLURP2_chr8_142759338_142774828	1/0	t0003	290	36	11	4	17	2	1	copy fasta	SLURP2	chr8	142759338	142774828
SLURP2_chr8_142759338_142774828	0/0	t0004	290	17	13	0	3	0	1	copy fasta	SLURP2	chr8	142759338	142774828
SLURP2_chr8_142759338_142774828	0/0	t0005	290	2	2	0	0	0	0	copy fasta	SLURP2	chr8	142759338	142774828
SLURP2_chr8_142759338_142774828	0/0	t0006	290	1	0	0	1	0	0	copy fasta	SLURP2	chr8	142759338	142774828
SLURP2_chr8_142759338_142774828	0/0	t0007	290	1	1	0	0	0	0	copy fasta	SLURP2	chr8	142759338	142774828
SLURP2_chr8_142759338_142774828	0/0	t0008	290	1	0	1	0	0	0	copy fasta	SLURP2	chr8	142759338	142774828
SLURP2_chr8_142759338_142774828	0/0	t0009	290	1	0	0	1	0	0	copy fasta	SLURP2	chr8	142759338	142774828
SLURP2_chr8_142759338_142774828	0/0	t0010	290	1	0	0	1	0	0	copy fasta	SLURP2	chr8	142759338	142774828
SLX1A_chr16_30188875_30202561	0/0	t0001	306	193	52	26	91	8	16	copy fasta	SLX1A	chr16	30188875	30202561
SLX1A_chr16_30188875_30202561	0/0	t0002	306	1	0	0	1	0	0	copy fasta	SLX1A	chr16	30188875	30202561
SLX1B_chr16_29449533_29463219	0/0	t0001	306	172	28	18	107	6	13	copy fasta	SLX1B	chr16	29449533	29463219
SLX1B_chr16_29449533_29463219	0/0	t0002	306	1	0	0	1	0	0	copy fasta	SLX1B	chr16	29449533	29463219