JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SMARCE1_chr17_40619962_40652818	0/0	t0034	3950	1	1	0	0	0	0	copy fasta	SMARCE1	chr17	40619962	40652818
SMARCE1_chr17_40619962_40652818	0/0	t0035	3915	1	0	0	1	0	0	copy fasta	SMARCE1	chr17	40619962	40652818
SMARCE1_chr17_40619962_40652818	0/0	t0036	3946	1	1	0	0	0	0	copy fasta	SMARCE1	chr17	40619962	40652818
SMARCE1_chr17_40619962_40652818	0/0	t0037	3949	1	1	0	0	0	0	copy fasta	SMARCE1	chr17	40619962	40652818
SMARCE1_chr17_40619962_40652818	0/0	t0038	3949	1	1	0	0	0	0	copy fasta	SMARCE1	chr17	40619962	40652818
SMARCE1_chr17_40619962_40652818	0/0	t0039	3948	1	0	1	0	0	0	copy fasta	SMARCE1	chr17	40619962	40652818
SMC1A_chrX_53369149_53427654	0/1	t0001	6009	110	36	15	45	1	12	copy fasta	SMC1A	chrX	53369149	53427654
SMC1A_chrX_53369149_53427654	0/0	t0002	6009	65	3	14	35	7	6	copy fasta	SMC1A	chrX	53369149	53427654
SMC1A_chrX_53369149_53427654	0/0	t0003	6009	6	5	1	0	0	0	copy fasta	SMC1A	chrX	53369149	53427654
SMC1A_chrX_53369149_53427654	0/0	t0004	6009	6	4	2	0	0	0	copy fasta	SMC1A	chrX	53369149	53427654
SMC1A_chrX_53369149_53427654	0/0	t0005	6009	3	3	0	0	0	0	copy fasta	SMC1A	chrX	53369149	53427654
SMC1A_chrX_53369149_53427654	0/0	t0006	6009	3	2	1	0	0	0	copy fasta	SMC1A	chrX	53369149	53427654
SMC1A_chrX_53369149_53427654	0/0	t0007	6009	2	2	0	0	0	0	copy fasta	SMC1A	chrX	53369149	53427654
SMC1A_chrX_53369149_53427654	0/0	t0008	6009	2	2	0	0	0	0	copy fasta	SMC1A	chrX	53369149	53427654
SMC1A_chrX_53369149_53427654	0/0	t0009	6009	2	0	0	0	0	2	copy fasta	SMC1A	chrX	53369149	53427654
SMC1A_chrX_53369149_53427654	0/0	t0010	6009	2	0	2	0	0	0	copy fasta	SMC1A	chrX	53369149	53427654
SMC1A_chrX_53369149_53427654	0/0	t0011	6009	1	1	0	0	0	0	copy fasta	SMC1A	chrX	53369149	53427654
SMC1A_chrX_53369149_53427654	0/0	t0012	6009	1	0	0	1	0	0	copy fasta	SMC1A	chrX	53369149	53427654
SMC1A_chrX_53369149_53427654	0/0	t0013	6007	1	0	0	0	1	0	copy fasta	SMC1A	chrX	53369149	53427654
SMC1A_chrX_53369149_53427654	1/0	t0014	6009	1	0	0	0	0	0	copy fasta	SMC1A	chrX	53369149	53427654
SMC1A_chrX_53369149_53427654	0/0	t0015	6009	1	0	0	1	0	0	copy fasta	SMC1A	chrX	53369149	53427654
SMC1A_chrX_53369149_53427654	0/0	t0016	6008	1	0	0	1	0	0	copy fasta	SMC1A	chrX	53369149	53427654
SMC1A_chrX_53369149_53427654	0/0	t0017	6009	1	1	0	0	0	0	copy fasta	SMC1A	chrX	53369149	53427654
SMC1A_chrX_53369149_53427654	0/0	t0018	6009	1	0	0	0	0	1	copy fasta	SMC1A	chrX	53369149	53427654
SMC1A_chrX_53369149_53427654	0/0	t0019	6009	1	1	0	0	0	0	copy fasta	SMC1A	chrX	53369149	53427654
SMC1A_chrX_53369149_53427654	0/0	t0020	6010	1	0	0	1	0	0	copy fasta	SMC1A	chrX	53369149	53427654
SMC1A_chrX_53369149_53427654	0/0	t0021	6009	1	0	0	0	0	1	copy fasta	SMC1A	chrX	53369149	53427654
SMC1A_chrX_53369149_53427654	0/0	t0022	6009	1	0	0	1	0	0	copy fasta	SMC1A	chrX	53369149	53427654
SMC1B_chr22_45339063_45418599	0/1	t0001	526	199	78	30	73	4	13	copy fasta	SMC1B	chr22	45339063	45418599
SMC1B_chr22_45339063_45418599	0/0	t0002	526	99	5	28	53	3	10	copy fasta	SMC1B	chr22	45339063	45418599
SMC1B_chr22_45339063_45418599	1/0	t0003	526	54	5	8	28	0	12	copy fasta	SMC1B	chr22	45339063	45418599
SMC1B_chr22_45339063_45418599	0/0	t0004	526	4	4	0	0	0	0	copy fasta	SMC1B	chr22	45339063	45418599
SMC1B_chr22_45339063_45418599	0/0	t0005	526	2	2	0	0	0	0	copy fasta	SMC1B	chr22	45339063	45418599
SMC1B_chr22_45339063_45418599	0/0	t0006	526	1	0	0	0	0	1	copy fasta	SMC1B	chr22	45339063	45418599
SMC1B_chr22_45339063_45418599	0/0	t0007	526	1	0	0	0	1	0	copy fasta	SMC1B	chr22	45339063	45418599
SMC2_chr9_104089309_104146419	1/0	t0001	2335	89	19	25	24	5	15	copy fasta	SMC2	chr9	104089309	104146419
SMC2_chr9_104089309_104146419	0/0	t0002	2335	70	21	17	19	0	13	copy fasta	SMC2	chr9	104089309	104146419
SMC2_chr9_104089309_104146419	0/1	t0003	2335	21	2	10	0	3	5	copy fasta	SMC2	chr9	104089309	104146419
SMC2_chr9_104089309_104146419	0/0	t0004	2337	18	18	0	0	0	0	copy fasta	SMC2	chr9	104089309	104146419
SMC2_chr9_104089309_104146419	0/0	t0005	2335	17	2	1	9	1	4	copy fasta	SMC2	chr9	104089309	104146419
SMC2_chr9_104089309_104146419	0/0	t0006	2335	12	0	4	7	0	1	copy fasta	SMC2	chr9	104089309	104146419
SMC2_chr9_104089309_104146419	0/0	t0007	2335	7	7	0	0	0	0	copy fasta	SMC2	chr9	104089309	104146419
SMC2_chr9_104089309_104146419	0/0	t0008	2337	5	0	0	5	0	0	copy fasta	SMC2	chr9	104089309	104146419
SMC2_chr9_104089309_104146419	0/0	t0009	2335	3	3	0	0	0	0	copy fasta	SMC2	chr9	104089309	104146419
SMC2_chr9_104089309_104146419	0/0	t0010	2335	3	0	0	3	0	0	copy fasta	SMC2	chr9	104089309	104146419
SMC2_chr9_104089309_104146419	0/0	t0011	2335	3	0	0	0	1	2	copy fasta	SMC2	chr9	104089309	104146419
SMC2_chr9_104089309_104146419	0/0	t0012	2337	2	2	0	0	0	0	copy fasta	SMC2	chr9	104089309	104146419
SMC2_chr9_104089309_104146419	0/0	t0013	2337	2	2	0	0	0	0	copy fasta	SMC2	chr9	104089309	104146419
SMC2_chr9_104089309_104146419	0/0	t0014	2281	2	0	0	2	0	0	copy fasta	SMC2	chr9	104089309	104146419
SMC2_chr9_104089309_104146419	0/0	t0015	2335	2	2	0	0	0	0	copy fasta	SMC2	chr9	104089309	104146419