JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SMCO4_chr11_93473472_93548391	0/0	t0012	801	4	4	0	0	0	0	copy fasta	SMCO4	chr11	93473472	93548391
SMCO4_chr11_93473472_93548391	0/0	t0013	810	3	1	2	0	0	0	copy fasta	SMCO4	chr11	93473472	93548391
SMCO4_chr11_93473472_93548391	0/0	t0014	801	3	3	0	0	0	0	copy fasta	SMCO4	chr11	93473472	93548391
SMCO4_chr11_93473472_93548391	0/0	t0015	800	2	0	0	2	0	0	copy fasta	SMCO4	chr11	93473472	93548391
SMCO4_chr11_93473472_93548391	0/0	t0016	800	1	1	0	0	0	0	copy fasta	SMCO4	chr11	93473472	93548391
SMCO4_chr11_93473472_93548391	0/0	t0017	808	1	0	0	1	0	0	copy fasta	SMCO4	chr11	93473472	93548391
SMCO4_chr11_93473472_93548391	0/0	t0018	792	1	1	0	0	0	0	copy fasta	SMCO4	chr11	93473472	93548391
SMCO4_chr11_93473472_93548391	0/0	t0019	808	1	0	0	0	0	1	copy fasta	SMCO4	chr11	93473472	93548391
SMCO4_chr11_93473472_93548391	0/0	t0020	812	1	1	0	0	0	0	copy fasta	SMCO4	chr11	93473472	93548391
SMCO4_chr11_93473472_93548391	0/0	t0021	800	1	1	0	0	0	0	copy fasta	SMCO4	chr11	93473472	93548391
SMCO4_chr11_93473472_93548391	0/0	t0022	812	1	1	0	0	0	0	copy fasta	SMCO4	chr11	93473472	93548391
SMCO4_chr11_93473472_93548391	0/0	t0023	818	1	1	0	0	0	0	copy fasta	SMCO4	chr11	93473472	93548391
SMCO4_chr11_93473472_93548391	0/0	t0024	805	1	1	0	0	0	0	copy fasta	SMCO4	chr11	93473472	93548391
SMCO4_chr11_93473472_93548391	0/0	t0025	807	1	1	0	0	0	0	copy fasta	SMCO4	chr11	93473472	93548391
SMCO4_chr11_93473472_93548391	0/0	t0026	815	1	1	0	0	0	0	copy fasta	SMCO4	chr11	93473472	93548391
SMCP_chr1_152873322_152890047	1/1	t0001	420	272	71	59	102	10	28	copy fasta	SMCP	chr1	152873322	152890047
SMCP_chr1_152873322_152890047	0/0	t0002	420	115	0	10	95	0	10	copy fasta	SMCP	chr1	152873322	152890047
SMCP_chr1_152873322_152890047	0/0	t0003	420	20	19	1	0	0	0	copy fasta	SMCP	chr1	152873322	152890047
SMCP_chr1_152873322_152890047	0/0	t0004	420	7	7	0	0	0	0	copy fasta	SMCP	chr1	152873322	152890047
SMCP_chr1_152873322_152890047	0/0	t0005	420	2	2	0	0	0	0	copy fasta	SMCP	chr1	152873322	152890047
SMCP_chr1_152873322_152890047	0/0	t0006	420	1	0	0	1	0	0	copy fasta	SMCP	chr1	152873322	152890047
SMCP_chr1_152873322_152890047	0/0	t0007	420	1	1	0	0	0	0	copy fasta	SMCP	chr1	152873322	152890047
SMCR8_chr17_18310293_18333056	1/0	t0001	5484	129	4	23	76	7	18	copy fasta	SMCR8	chr17	18310293	18333056
SMCR8_chr17_18310293_18333056	0/0	t0002	5484	90	15	12	53	2	8	copy fasta	SMCR8	chr17	18310293	18333056
SMCR8_chr17_18310293_18333056	0/0	t0003	5484	66	16	8	37	1	4	copy fasta	SMCR8	chr17	18310293	18333056
SMCR8_chr17_18310293_18333056	0/0	t0004	5484	50	11	18	13	4	4	copy fasta	SMCR8	chr17	18310293	18333056
SMCR8_chr17_18310293_18333056	0/0	t0005	5484	23	20	1	2	0	0	copy fasta	SMCR8	chr17	18310293	18333056
SMCR8_chr17_18310293_18333056	0/0	t0006	5484	10	10	0	0	0	0	copy fasta	SMCR8	chr17	18310293	18333056
SMCR8_chr17_18310293_18333056	0/0	t0007	5484	6	6	0	0	0	0	copy fasta	SMCR8	chr17	18310293	18333056
SMCR8_chr17_18310293_18333056	0/0	t0008	5484	6	6	0	0	0	0	copy fasta	SMCR8	chr17	18310293	18333056
SMCR8_chr17_18310293_18333056	0/0	t0009	5484	4	0	2	0	1	1	copy fasta	SMCR8	chr17	18310293	18333056
SMCR8_chr17_18310293_18333056	0/0	t0010	5484	3	3	0	0	0	0	copy fasta	SMCR8	chr17	18310293	18333056
SMCR8_chr17_18310293_18333056	0/0	t0011	5485	3	0	3	0	0	0	copy fasta	SMCR8	chr17	18310293	18333056
SMCR8_chr17_18310293_18333056	0/0	t0012	5484	3	3	0	0	0	0	copy fasta	SMCR8	chr17	18310293	18333056
SMCR8_chr17_18310293_18333056	0/0	t0013	5484	2	0	1	0	0	1	copy fasta	SMCR8	chr17	18310293	18333056
SMCR8_chr17_18310293_18333056	0/0	t0014	5484	2	0	2	0	0	0	copy fasta	SMCR8	chr17	18310293	18333056
SMCR8_chr17_18310293_18333056	0/0	t0015	5484	2	0	1	0	0	1	copy fasta	SMCR8	chr17	18310293	18333056
SMCR8_chr17_18310293_18333056	0/0	t0016	5484	2	2	0	0	0	0	copy fasta	SMCR8	chr17	18310293	18333056
SMCR8_chr17_18310293_18333056	0/0	t0017	5484	1	0	0	0	1	0	copy fasta	SMCR8	chr17	18310293	18333056
SMCR8_chr17_18310293_18333056	0/0	t0018	5484	1	0	0	1	0	0	copy fasta	SMCR8	chr17	18310293	18333056
SMCR8_chr17_18310293_18333056	0/0	t0019	5484	1	0	0	1	0	0	copy fasta	SMCR8	chr17	18310293	18333056
SMCR8_chr17_18310293_18333056	0/0	t0020	5484	1	0	0	1	0	0	copy fasta	SMCR8	chr17	18310293	18333056
SMCR8_chr17_18310293_18333056	0/0	t0021	5484	1	0	0	0	0	1	copy fasta	SMCR8	chr17	18310293	18333056
SMCR8_chr17_18310293_18333056	0/0	t0022	5484	1	0	0	1	0	0	copy fasta	SMCR8	chr17	18310293	18333056
SMCR8_chr17_18310293_18333056	0/0	t0023	5484	1	0	0	0	0	1	copy fasta	SMCR8	chr17	18310293	18333056
SMCR8_chr17_18310293_18333056	0/0	t0024	5484	1	0	0	0	0	1	copy fasta	SMCR8	chr17	18310293	18333056
SMCR8_chr17_18310293_18333056	0/0	t0025	5484	1	0	0	0	0	1	copy fasta	SMCR8	chr17	18310293	18333056
SMCR8_chr17_18310293_18333056	0/0	t0026	5484	1	0	0	1	0	0	copy fasta	SMCR8	chr17	18310293	18333056
SMCR8_chr17_18310293_18333056	0/0	t0027	5484	1	1	0	0	0	0	copy fasta	SMCR8	chr17	18310293	18333056
SMCR8_chr17_18310293_18333056	0/1	t0028	5484	1	0	0	0	0	0	copy fasta	SMCR8	chr17	18310293	18333056