JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SMG1_chr16_18799860_18931408	0/0	t0032	5074	1	1	0	0	0	0	copy fasta	SMG1	chr16	18799860	18931408
SMG1_chr16_18799860_18931408	0/0	t0033	5074	1	0	0	0	1	0	copy fasta	SMG1	chr16	18799860	18931408
SMG5_chr1_156244224_156287825	0/0	t0001	1509	171	19	45	79	7	21	copy fasta	SMG5	chr1	156244224	156287825
SMG5_chr1_156244224_156287825	1/1	t0002	1509	170	50	23	73	7	15	copy fasta	SMG5	chr1	156244224	156287825
SMG5_chr1_156244224_156287825	0/0	t0003	1509	8	7	1	0	0	0	copy fasta	SMG5	chr1	156244224	156287825
SMG5_chr1_156244224_156287825	0/0	t0004	1512	6	6	0	0	0	0	copy fasta	SMG5	chr1	156244224	156287825
SMG5_chr1_156244224_156287825	0/0	t0005	1509	3	0	1	0	0	2	copy fasta	SMG5	chr1	156244224	156287825
SMG5_chr1_156244224_156287825	0/0	t0006	1509	2	2	0	0	0	0	copy fasta	SMG5	chr1	156244224	156287825
SMG5_chr1_156244224_156287825	0/0	t0007	1509	1	1	0	0	0	0	copy fasta	SMG5	chr1	156244224	156287825
SMG5_chr1_156244224_156287825	0/0	t0008	1481	1	0	0	1	0	0	copy fasta	SMG5	chr1	156244224	156287825
SMG5_chr1_156244224_156287825	0/0	t0009	1509	1	0	0	1	0	0	copy fasta	SMG5	chr1	156244224	156287825
SMG5_chr1_156244224_156287825	0/0	t0010	1509	1	1	0	0	0	0	copy fasta	SMG5	chr1	156244224	156287825
SMG5_chr1_156244224_156287825	0/0	t0011	1509	1	0	0	1	0	0	copy fasta	SMG5	chr1	156244224	156287825
SMG5_chr1_156244224_156287825	0/0	t0012	1509	1	0	0	1	0	0	copy fasta	SMG5	chr1	156244224	156287825
SMG5_chr1_156244224_156287825	0/0	t0013	1509	1	0	0	0	0	1	copy fasta	SMG5	chr1	156244224	156287825
SMG5_chr1_156244224_156287825	0/0	t0014	1509	1	0	0	0	0	1	copy fasta	SMG5	chr1	156244224	156287825
SMG6_chr17_2054843_2308785	0/1	t0001	1716	131	24	27	59	6	14	copy fasta	SMG6	chr17	2054843	2308785
SMG6_chr17_2054843_2308785	0/0	t0002	1717	50	7	12	18	1	12	copy fasta	SMG6	chr17	2054843	2308785
SMG6_chr17_2054843_2308785	1/0	t0003	1715	23	5	5	1	1	10	copy fasta	SMG6	chr17	2054843	2308785
SMG6_chr17_2054843_2308785	0/0	t0004	1716	18	15	1	2	0	0	copy fasta	SMG6	chr17	2054843	2308785
SMG6_chr17_2054843_2308785	0/0	t0005	1715	10	2	3	4	0	1	copy fasta	SMG6	chr17	2054843	2308785
SMG6_chr17_2054843_2308785	0/0	t0006	1717	5	4	0	1	0	0	copy fasta	SMG6	chr17	2054843	2308785
SMG6_chr17_2054843_2308785	0/0	t0007	1716	5	0	0	0	1	4	copy fasta	SMG6	chr17	2054843	2308785
SMG6_chr17_2054843_2308785	0/0	t0008	1716	5	5	0	0	0	0	copy fasta	SMG6	chr17	2054843	2308785
SMG6_chr17_2054843_2308785	0/0	t0009	1716	4	0	3	1	0	0	copy fasta	SMG6	chr17	2054843	2308785
SMG6_chr17_2054843_2308785	0/0	t0010	1716	4	4	0	0	0	0	copy fasta	SMG6	chr17	2054843	2308785
SMG6_chr17_2054843_2308785	0/0	t0011	1717	3	0	0	2	0	1	copy fasta	SMG6	chr17	2054843	2308785
SMG6_chr17_2054843_2308785	0/0	t0012	1715	3	2	1	0	0	0	copy fasta	SMG6	chr17	2054843	2308785
SMG6_chr17_2054843_2308785	0/0	t0013	1715	2	0	0	2	0	0	copy fasta	SMG6	chr17	2054843	2308785
SMG6_chr17_2054843_2308785	0/0	t0014	1716	1	1	0	0	0	0	copy fasta	SMG6	chr17	2054843	2308785
SMG6_chr17_2054843_2308785	0/0	t0015	1717	1	0	1	0	0	0	copy fasta	SMG6	chr17	2054843	2308785
SMG6_chr17_2054843_2308785	0/0	t0016	1717	1	1	0	0	0	0	copy fasta	SMG6	chr17	2054843	2308785
SMG6_chr17_2054843_2308785	0/0	t0017	1717	1	0	0	0	0	1	copy fasta	SMG6	chr17	2054843	2308785
SMG6_chr17_2054843_2308785	0/0	t0018	1716	1	0	0	1	0	0	copy fasta	SMG6	chr17	2054843	2308785
SMG6_chr17_2054843_2308785	0/0	t0019	1716	1	0	1	0	0	0	copy fasta	SMG6	chr17	2054843	2308785
SMG6_chr17_2054843_2308785	0/0	t0020	1716	1	0	0	1	0	0	copy fasta	SMG6	chr17	2054843	2308785
SMG6_chr17_2054843_2308785	0/0	t0021	1716	1	1	0	0	0	0	copy fasta	SMG6	chr17	2054843	2308785
SMG6_chr17_2054843_2308785	0/0	t0022	1716	1	1	0	0	0	0	copy fasta	SMG6	chr17	2054843	2308785
SMG6_chr17_2054843_2308785	0/0	t0023	1716	1	1	0	0	0	0	copy fasta	SMG6	chr17	2054843	2308785
SMG6_chr17_2054843_2308785	0/0	t0024	1716	1	0	0	0	0	1	copy fasta	SMG6	chr17	2054843	2308785
SMG6_chr17_2054843_2308785	0/0	t0025	1716	1	1	0	0	0	0	copy fasta	SMG6	chr17	2054843	2308785
SMG6_chr17_2054843_2308785	0/0	t0026	1716	1	0	0	0	0	1	copy fasta	SMG6	chr17	2054843	2308785
SMG6_chr17_2054843_2308785	0/0	t0027	1716	1	0	0	0	0	1	copy fasta	SMG6	chr17	2054843	2308785
SMG6_chr17_2054843_2308785	0/0	t0028	1715	1	0	0	0	1	0	copy fasta	SMG6	chr17	2054843	2308785
SMG7_chr1_183467499_183559191	1/1	t0001	2383	151	38	25	65	8	13	copy fasta	SMG7	chr1	183467499	183559191
SMG7_chr1_183467499_183559191	0/0	t0002	2377	62	19	15	21	3	4	copy fasta	SMG7	chr1	183467499	183559191
SMG7_chr1_183467499_183559191	0/0	t0003	2386	43	3	11	26	0	3	copy fasta	SMG7	chr1	183467499	183559191
SMG7_chr1_183467499_183559191	0/0	t0004	2385	27	4	5	16	1	1	copy fasta	SMG7	chr1	183467499	183559191
SMG7_chr1_183467499_183559191	0/0	t0005	2383	19	13	3	1	0	2	copy fasta	SMG7	chr1	183467499	183559191
SMG7_chr1_183467499_183559191	0/0	t0006	2387	17	1	3	10	1	2	copy fasta	SMG7	chr1	183467499	183559191