JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SOX14_chr3_137759315_137771334	0/0	t0012	1298	1	1	0	0	0	0	copy fasta	SOX14	chr3	137759315	137771334
SOX14_chr3_137759315_137771334	0/0	t0013	1298	1	0	1	0	0	0	copy fasta	SOX14	chr3	137759315	137771334
SOX14_chr3_137759315_137771334	0/0	t0014	1298	1	1	0	0	0	0	copy fasta	SOX14	chr3	137759315	137771334
SOX14_chr3_137759315_137771334	0/0	t0015	1298	1	0	0	1	0	0	copy fasta	SOX14	chr3	137759315	137771334
SOX14_chr3_137759315_137771334	0/0	t0016	1298	1	0	1	0	0	0	copy fasta	SOX14	chr3	137759315	137771334
SOX15_chr17_7583178_7595094	1/1	t0001	619	399	79	79	187	15	37	copy fasta	SOX15	chr17	7583178	7595094
SOX15_chr17_7583178_7595094	0/0	t0002	619	16	15	1	0	0	0	copy fasta	SOX15	chr17	7583178	7595094
SOX15_chr17_7583178_7595094	0/0	t0003	619	1	0	0	0	1	0	copy fasta	SOX15	chr17	7583178	7595094
SOX15_chr17_7583178_7595094	0/0	t0004	619	1	0	0	1	0	0	copy fasta	SOX15	chr17	7583178	7595094
SOX15_chr17_7583178_7595094	0/0	t0005	619	1	0	0	0	0	1	copy fasta	SOX15	chr17	7583178	7595094
SOX17_chr8_54452935_54465892	1/1	t0001	1102	273	85	42	115	9	20	copy fasta	SOX17	chr8	54452935	54465892
SOX17_chr8_54452935_54465892	0/0	t0002	1102	123	5	23	73	1	21	copy fasta	SOX17	chr8	54452935	54465892
SOX17_chr8_54452935_54465892	0/0	t0003	1102	11	0	5	5	0	1	copy fasta	SOX17	chr8	54452935	54465892
SOX17_chr8_54452935_54465892	0/0	t0004	1102	5	5	0	0	0	0	copy fasta	SOX17	chr8	54452935	54465892
SOX17_chr8_54452935_54465892	0/0	t0005	1102	2	0	0	2	0	0	copy fasta	SOX17	chr8	54452935	54465892
SOX17_chr8_54452935_54465892	0/0	t0006	1102	2	2	0	0	0	0	copy fasta	SOX17	chr8	54452935	54465892
SOX17_chr8_54452935_54465892	0/0	t0007	1102	1	0	1	0	0	0	copy fasta	SOX17	chr8	54452935	54465892
SOX17_chr8_54452935_54465892	0/0	t0008	1102	1	0	1	0	0	0	copy fasta	SOX17	chr8	54452935	54465892
SOX17_chr8_54452935_54465892	0/0	t0009	1102	1	0	0	1	0	0	copy fasta	SOX17	chr8	54452935	54465892
SOX17_chr8_54452935_54465892	0/0	t0010	1102	1	0	0	1	0	0	copy fasta	SOX17	chr8	54452935	54465892
SOX17_chr8_54452935_54465892	0/0	t0011	1102	1	0	0	1	0	0	copy fasta	SOX17	chr8	54452935	54465892
SOX17_chr8_54452935_54465892	0/0	t0012	1102	1	1	0	0	0	0	copy fasta	SOX17	chr8	54452935	54465892
SOX18_chr20_64042582_64054639	1/0	t0001	708	314	85	61	118	16	33	copy fasta	SOX18	chr20	64042582	64054639
SOX18_chr20_64042582_64054639	0/1	t0002	708	25	0	12	3	0	9	copy fasta	SOX18	chr20	64042582	64054639
SOX18_chr20_64042582_64054639	0/0	t0003	708	5	5	0	0	0	0	copy fasta	SOX18	chr20	64042582	64054639
SOX18_chr20_64042582_64054639	0/0	t0004	708	3	2	1	0	0	0	copy fasta	SOX18	chr20	64042582	64054639
SOX18_chr20_64042582_64054639	0/0	t0005	708	3	0	0	0	0	3	copy fasta	SOX18	chr20	64042582	64054639
SOX18_chr20_64042582_64054639	0/0	t0006	708	1	0	0	0	0	1	copy fasta	SOX18	chr20	64042582	64054639
SOX18_chr20_64042582_64054639	0/0	t0007	708	1	0	0	1	0	0	copy fasta	SOX18	chr20	64042582	64054639
SOX1_chr13_112062149_112076706	0/0	t0001	3383	119	24	21	60	6	8	copy fasta	SOX1	chr13	112062149	112076706
SOX1_chr13_112062149_112076706	1/1	t0002	3383	97	5	17	48	9	16	copy fasta	SOX1	chr13	112062149	112076706
SOX1_chr13_112062149_112076706	0/0	t0003	3382	26	10	5	9	0	2	copy fasta	SOX1	chr13	112062149	112076706
SOX1_chr13_112062149_112076706	0/0	t0004	3384	15	6	7	1	0	1	copy fasta	SOX1	chr13	112062149	112076706
SOX1_chr13_112062149_112076706	0/0	t0005	3383	9	0	0	9	0	0	copy fasta	SOX1	chr13	112062149	112076706
SOX1_chr13_112062149_112076706	0/0	t0006	3384	9	0	1	7	0	1	copy fasta	SOX1	chr13	112062149	112076706
SOX1_chr13_112062149_112076706	0/0	t0007	3383	9	8	1	0	0	0	copy fasta	SOX1	chr13	112062149	112076706
SOX1_chr13_112062149_112076706	0/0	t0008	3380	8	8	0	0	0	0	copy fasta	SOX1	chr13	112062149	112076706
SOX1_chr13_112062149_112076706	0/0	t0009	3384	8	0	2	6	0	0	copy fasta	SOX1	chr13	112062149	112076706
SOX1_chr13_112062149_112076706	0/0	t0010	3383	7	0	0	4	0	3	copy fasta	SOX1	chr13	112062149	112076706
SOX1_chr13_112062149_112076706	0/0	t0011	3384	5	0	1	2	0	2	copy fasta	SOX1	chr13	112062149	112076706
SOX1_chr13_112062149_112076706	0/0	t0012	3384	4	0	0	4	0	0	copy fasta	SOX1	chr13	112062149	112076706
SOX1_chr13_112062149_112076706	0/0	t0013	3381	4	3	1	0	0	0	copy fasta	SOX1	chr13	112062149	112076706
SOX1_chr13_112062149_112076706	0/0	t0014	3384	4	4	0	0	0	0	copy fasta	SOX1	chr13	112062149	112076706
SOX1_chr13_112062149_112076706	0/0	t0015	3382	3	2	1	0	0	0	copy fasta	SOX1	chr13	112062149	112076706
SOX1_chr13_112062149_112076706	0/0	t0016	3383	3	0	0	3	0	0	copy fasta	SOX1	chr13	112062149	112076706
SOX1_chr13_112062149_112076706	0/0	t0017	3382	3	3	0	0	0	0	copy fasta	SOX1	chr13	112062149	112076706
SOX1_chr13_112062149_112076706	0/0	t0018	3382	3	3	0	0	0	0	copy fasta	SOX1	chr13	112062149	112076706
SOX1_chr13_112062149_112076706	0/0	t0019	3384	2	0	0	2	0	0	copy fasta	SOX1	chr13	112062149	112076706
SOX1_chr13_112062149_112076706	0/0	t0020	3382	2	0	0	0	0	2	copy fasta	SOX1	chr13	112062149	112076706
SOX1_chr13_112062149_112076706	0/0	t0021	3383	2	0	0	0	0	2	copy fasta	SOX1	chr13	112062149	112076706