JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SOX1_chr13_112062149_112076706	0/0	t0022	3384	2	2	0	0	0	0	copy fasta	SOX1	chr13	112062149	112076706
SOX1_chr13_112062149_112076706	0/0	t0023	3382	2	2	0	0	0	0	copy fasta	SOX1	chr13	112062149	112076706
SOX1_chr13_112062149_112076706	0/0	t0024	3382	2	1	0	0	0	1	copy fasta	SOX1	chr13	112062149	112076706
SOX1_chr13_112062149_112076706	0/0	t0025	3383	2	2	0	0	0	0	copy fasta	SOX1	chr13	112062149	112076706
SOX1_chr13_112062149_112076706	0/0	t0026	3383	2	0	0	2	0	0	copy fasta	SOX1	chr13	112062149	112076706
SOX1_chr13_112062149_112076706	0/0	t0027	3384	2	2	0	0	0	0	copy fasta	SOX1	chr13	112062149	112076706
SOX1_chr13_112062149_112076706	0/0	t0028	3384	2	2	0	0	0	0	copy fasta	SOX1	chr13	112062149	112076706
SOX1_chr13_112062149_112076706	0/0	t0029	3383	2	1	1	0	0	0	copy fasta	SOX1	chr13	112062149	112076706
SOX1_chr13_112062149_112076706	0/0	t0030	3383	1	0	0	1	0	0	copy fasta	SOX1	chr13	112062149	112076706
SOX1_chr13_112062149_112076706	0/0	t0031	3383	1	0	1	0	0	0	copy fasta	SOX1	chr13	112062149	112076706
SOX1_chr13_112062149_112076706	0/0	t0032	3385	1	0	0	0	0	1	copy fasta	SOX1	chr13	112062149	112076706
SOX1_chr13_112062149_112076706	0/0	t0033	3385	1	0	0	0	0	1	copy fasta	SOX1	chr13	112062149	112076706
SOX1_chr13_112062149_112076706	0/0	t0034	3385	1	0	0	1	0	0	copy fasta	SOX1	chr13	112062149	112076706
SOX1_chr13_112062149_112076706	0/0	t0035	3384	1	0	1	0	0	0	copy fasta	SOX1	chr13	112062149	112076706
SOX1_chr13_112062149_112076706	0/0	t0036	3385	1	1	0	0	0	0	copy fasta	SOX1	chr13	112062149	112076706
SOX1_chr13_112062149_112076706	0/0	t0037	3384	1	1	0	0	0	0	copy fasta	SOX1	chr13	112062149	112076706
SOX1_chr13_112062149_112076706	0/0	t0038	3381	1	0	0	1	0	0	copy fasta	SOX1	chr13	112062149	112076706
SOX1_chr13_112062149_112076706	0/0	t0039	3382	1	0	0	0	0	1	copy fasta	SOX1	chr13	112062149	112076706
SOX1_chr13_112062149_112076706	0/0	t0040	3382	1	0	1	0	0	0	copy fasta	SOX1	chr13	112062149	112076706
SOX1_chr13_112062149_112076706	0/0	t0041	3382	1	1	0	0	0	0	copy fasta	SOX1	chr13	112062149	112076706
SOX1_chr13_112062149_112076706	0/0	t0042	3383	1	1	0	0	0	0	copy fasta	SOX1	chr13	112062149	112076706
SOX1_chr13_112062149_112076706	0/0	t0043	3383	1	0	1	0	0	0	copy fasta	SOX1	chr13	112062149	112076706
SOX1_chr13_112062149_112076706	0/0	t0044	3383	1	1	0	0	0	0	copy fasta	SOX1	chr13	112062149	112076706
SOX1_chr13_112062149_112076706	0/0	t0045	3383	1	1	0	0	0	0	copy fasta	SOX1	chr13	112062149	112076706
SOX1_chr13_112062149_112076706	0/0	t0046	3383	1	0	0	0	1	0	copy fasta	SOX1	chr13	112062149	112076706
SOX1_chr13_112062149_112076706	0/0	t0047	3383	1	0	0	0	0	1	copy fasta	SOX1	chr13	112062149	112076706
SOX1_chr13_112062149_112076706	0/0	t0048	3385	1	0	0	1	0	0	copy fasta	SOX1	chr13	112062149	112076706
SOX1_chr13_112062149_112076706	0/0	t0049	3384	1	0	0	1	0	0	copy fasta	SOX1	chr13	112062149	112076706
SOX1_chr13_112062149_112076706	0/0	t0050	3384	1	0	0	1	0	0	copy fasta	SOX1	chr13	112062149	112076706
SOX1_chr13_112062149_112076706	0/0	t0051	3384	1	0	0	1	0	0	copy fasta	SOX1	chr13	112062149	112076706
SOX1_chr13_112062149_112076706	0/0	t0052	3383	1	0	0	1	0	0	copy fasta	SOX1	chr13	112062149	112076706
SOX1_chr13_112062149_112076706	0/0	t0053	3382	1	1	0	0	0	0	copy fasta	SOX1	chr13	112062149	112076706
SOX1_chr13_112062149_112076706	0/0	t0054	3383	1	1	0	0	0	0	copy fasta	SOX1	chr13	112062149	112076706
SOX1_chr13_112062149_112076706	0/0	t0055	3384	1	1	0	0	0	0	copy fasta	SOX1	chr13	112062149	112076706
SOX1_chr13_112062149_112076706	0/0	t0056	3383	1	1	0	0	0	0	copy fasta	SOX1	chr13	112062149	112076706
SOX1_chr13_112062149_112076706	0/0	t0057	3383	1	0	0	1	0	0	copy fasta	SOX1	chr13	112062149	112076706
SOX1_chr13_112062149_112076706	0/0	t0058	3384	1	0	0	1	0	0	copy fasta	SOX1	chr13	112062149	112076706
SOX1_chr13_112062149_112076706	0/0	t0059	3383	1	0	0	1	0	0	copy fasta	SOX1	chr13	112062149	112076706
SOX21_chr13_94704622_94717545	0/1	t0001	2094	274	74	57	97	13	32	copy fasta	SOX21	chr13	94704622	94717545
SOX21_chr13_94704622_94717545	1/0	t0002	2094	111	0	15	78	3	14	copy fasta	SOX21	chr13	94704622	94717545
SOX21_chr13_94704622_94717545	0/0	t0003	2094	26	6	0	20	0	0	copy fasta	SOX21	chr13	94704622	94717545
SOX21_chr13_94704622_94717545	0/0	t0004	2094	17	15	2	0	0	0	copy fasta	SOX21	chr13	94704622	94717545
SOX21_chr13_94704622_94717545	0/0	t0005	2094	2	2	0	0	0	0	copy fasta	SOX21	chr13	94704622	94717545
SOX21_chr13_94704622_94717545	0/0	t0006	2094	2	2	0	0	0	0	copy fasta	SOX21	chr13	94704622	94717545
SOX21_chr13_94704622_94717545	0/0	t0007	2094	1	0	0	0	0	1	copy fasta	SOX21	chr13	94704622	94717545
SOX21_chr13_94704622_94717545	0/0	t0008	2094	1	1	0	0	0	0	copy fasta	SOX21	chr13	94704622	94717545
SOX21_chr13_94704622_94717545	0/0	t0009	2094	1	0	0	1	0	0	copy fasta	SOX21	chr13	94704622	94717545
SOX21_chr13_94704622_94717545	0/0	t0010	2094	1	0	0	0	0	1	copy fasta	SOX21	chr13	94704622	94717545
SOX2_chr3_181706925_181719436	1/1	t0001	1559	268	62	57	106	9	32	copy fasta	SOX2	chr3	181706925	181719436
SOX2_chr3_181706925_181719436	0/0	t0002	1560	65	13	1	46	2	3	copy fasta	SOX2	chr3	181706925	181719436