JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SP110_chr2_230160186_230224984	0/0	t0070	4033	1	0	1	0	0	0	copy fasta	SP110	chr2	230160186	230224984
SP110_chr2_230160186_230224984	0/0	t0071	4019	1	0	0	1	0	0	copy fasta	SP110	chr2	230160186	230224984
SP110_chr2_230160186_230224984	0/0	t0072	4028	1	0	1	0	0	0	copy fasta	SP110	chr2	230160186	230224984
SP110_chr2_230160186_230224984	0/0	t0073	4028	1	0	1	0	0	0	copy fasta	SP110	chr2	230160186	230224984
SP110_chr2_230160186_230224984	0/0	t0074	4052	1	0	0	1	0	0	copy fasta	SP110	chr2	230160186	230224984
SP110_chr2_230160186_230224984	0/0	t0075	4051	1	0	0	1	0	0	copy fasta	SP110	chr2	230160186	230224984
SP110_chr2_230160186_230224984	0/0	t0076	4050	1	0	0	1	0	0	copy fasta	SP110	chr2	230160186	230224984
SP110_chr2_230160186_230224984	0/0	t0077	4051	1	0	0	1	0	0	copy fasta	SP110	chr2	230160186	230224984
SP110_chr2_230160186_230224984	0/0	t0078	4050	1	0	0	0	0	1	copy fasta	SP110	chr2	230160186	230224984
SP110_chr2_230160186_230224984	0/0	t0079	4050	1	0	0	1	0	0	copy fasta	SP110	chr2	230160186	230224984
SP110_chr2_230160186_230224984	0/0	t0080	4050	1	0	0	1	0	0	copy fasta	SP110	chr2	230160186	230224984
SP110_chr2_230160186_230224984	0/0	t0081	4050	1	0	0	1	0	0	copy fasta	SP110	chr2	230160186	230224984
SP110_chr2_230160186_230224984	0/0	t0082	4050	1	1	0	0	0	0	copy fasta	SP110	chr2	230160186	230224984
SP110_chr2_230160186_230224984	0/0	t0083	4052	1	1	0	0	0	0	copy fasta	SP110	chr2	230160186	230224984
SP110_chr2_230160186_230224984	0/0	t0084	4051	1	1	0	0	0	0	copy fasta	SP110	chr2	230160186	230224984
SP110_chr2_230160186_230224984	0/0	t0085	4053	1	0	0	1	0	0	copy fasta	SP110	chr2	230160186	230224984
SP110_chr2_230160186_230224984	0/0	t0086	4053	1	1	0	0	0	0	copy fasta	SP110	chr2	230160186	230224984
SP110_chr2_230160186_230224984	0/0	t0087	4051	1	0	0	1	0	0	copy fasta	SP110	chr2	230160186	230224984
SP110_chr2_230160186_230224984	0/0	t0088	4054	1	1	0	0	0	0	copy fasta	SP110	chr2	230160186	230224984
SP110_chr2_230160186_230224984	0/0	t0089	4053	1	1	0	0	0	0	copy fasta	SP110	chr2	230160186	230224984
SP110_chr2_230160186_230224984	0/0	t0090	4053	1	1	0	0	0	0	copy fasta	SP110	chr2	230160186	230224984
SP110_chr2_230160186_230224984	0/0	t0091	4050	1	0	0	0	0	1	copy fasta	SP110	chr2	230160186	230224984
SP110_chr2_230160186_230224984	0/0	t0092	4049	1	0	1	0	0	0	copy fasta	SP110	chr2	230160186	230224984
SP110_chr2_230160186_230224984	0/0	t0093	4051	1	0	0	1	0	0	copy fasta	SP110	chr2	230160186	230224984
SP140L_chr2_230322193_230408732	1/1	t0001	914	261	68	45	104	15	27	copy fasta	SP140L	chr2	230322193	230408732
SP140L_chr2_230322193_230408732	0/0	t0002	914	45	3	14	14	3	11	copy fasta	SP140L	chr2	230322193	230408732
SP140L_chr2_230322193_230408732	0/0	t0003	914	12	0	0	12	0	0	copy fasta	SP140L	chr2	230322193	230408732
SP140L_chr2_230322193_230408732	0/0	t0004	914	12	12	0	0	0	0	copy fasta	SP140L	chr2	230322193	230408732
SP140L_chr2_230322193_230408732	0/0	t0005	915	3	3	0	0	0	0	copy fasta	SP140L	chr2	230322193	230408732
SP140L_chr2_230322193_230408732	0/0	t0006	914	1	1	0	0	0	0	copy fasta	SP140L	chr2	230322193	230408732
SP140L_chr2_230322193_230408732	0/0	t0007	914	1	0	1	0	0	0	copy fasta	SP140L	chr2	230322193	230408732
SP140L_chr2_230322193_230408732	0/0	t0008	914	1	1	0	0	0	0	copy fasta	SP140L	chr2	230322193	230408732
SP140_chr2_230220736_230318215	1/1	t0001	641	293	68	48	127	13	35	copy fasta	SP140	chr2	230220736	230318215
SP140_chr2_230220736_230318215	0/0	t0002	641	43	15	6	17	0	5	copy fasta	SP140	chr2	230220736	230318215
SP140_chr2_230220736_230318215	0/0	t0003	641	23	1	14	0	5	3	copy fasta	SP140	chr2	230220736	230318215
SP140_chr2_230220736_230318215	0/0	t0004	641	5	5	0	0	0	0	copy fasta	SP140	chr2	230220736	230318215
SP140_chr2_230220736_230318215	0/0	t0005	641	1	0	1	0	0	0	copy fasta	SP140	chr2	230220736	230318215
SP140_chr2_230220736_230318215	0/0	t0006	641	1	0	0	1	0	0	copy fasta	SP140	chr2	230220736	230318215
SP140_chr2_230220736_230318215	0/0	t0007	641	1	0	0	0	0	1	copy fasta	SP140	chr2	230220736	230318215
SP140_chr2_230220736_230318215	0/0	t0008	641	1	0	1	0	0	0	copy fasta	SP140	chr2	230220736	230318215
SP140_chr2_230220736_230318215	0/0	t0009	641	1	0	0	1	0	0	copy fasta	SP140	chr2	230220736	230318215
SP140_chr2_230220736_230318215	0/0	t0010	641	1	1	0	0	0	0	copy fasta	SP140	chr2	230220736	230318215
SP1_chr12_53375176_53421446	0/1	t0001	5320	56	1	15	28	1	10	copy fasta	SP1	chr12	53375176	53421446
SP1_chr12_53375176_53421446	0/0	t0002	5312	55	4	5	37	1	8	copy fasta	SP1	chr12	53375176	53421446
SP1_chr12_53375176_53421446	1/0	t0003	5323	29	4	6	8	3	7	copy fasta	SP1	chr12	53375176	53421446
SP1_chr12_53375176_53421446	0/0	t0004	5322	26	2	9	12	2	1	copy fasta	SP1	chr12	53375176	53421446
SP1_chr12_53375176_53421446	0/0	t0005	5317	12	11	1	0	0	0	copy fasta	SP1	chr12	53375176	53421446
SP1_chr12_53375176_53421446	0/0	t0006	5314	9	3	4	1	1	0	copy fasta	SP1	chr12	53375176	53421446
SP1_chr12_53375176_53421446	0/0	t0007	5321	8	1	4	2	1	0	copy fasta	SP1	chr12	53375176	53421446
SP1_chr12_53375176_53421446	0/0	t0008	5324	6	1	2	3	0	0	copy fasta	SP1	chr12	53375176	53421446