JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SP1_chr12_53375176_53421446	0/0	t0009	5313	4	0	2	2	0	0	copy fasta	SP1	chr12	53375176	53421446
SP1_chr12_53375176_53421446	0/0	t0010	5315	4	4	0	0	0	0	copy fasta	SP1	chr12	53375176	53421446
SP1_chr12_53375176_53421446	0/0	t0011	5320	4	4	0	0	0	0	copy fasta	SP1	chr12	53375176	53421446
SP1_chr12_53375176_53421446	0/0	t0012	5324	4	0	1	2	1	0	copy fasta	SP1	chr12	53375176	53421446
SP1_chr12_53375176_53421446	0/0	t0013	5323	4	2	1	0	1	0	copy fasta	SP1	chr12	53375176	53421446
SP1_chr12_53375176_53421446	0/0	t0014	5322	4	0	0	3	0	1	copy fasta	SP1	chr12	53375176	53421446
SP1_chr12_53375176_53421446	0/0	t0015	5321	3	0	1	1	0	1	copy fasta	SP1	chr12	53375176	53421446
SP1_chr12_53375176_53421446	0/0	t0016	5322	3	3	0	0	0	0	copy fasta	SP1	chr12	53375176	53421446
SP1_chr12_53375176_53421446	0/0	t0017	5325	3	0	0	1	1	1	copy fasta	SP1	chr12	53375176	53421446
SP1_chr12_53375176_53421446	0/0	t0018	5314	3	0	0	3	0	0	copy fasta	SP1	chr12	53375176	53421446
SP1_chr12_53375176_53421446	0/0	t0019	5323	2	1	0	1	0	0	copy fasta	SP1	chr12	53375176	53421446
SP1_chr12_53375176_53421446	0/0	t0020	5324	2	0	2	0	0	0	copy fasta	SP1	chr12	53375176	53421446
SP1_chr12_53375176_53421446	0/0	t0021	5315	2	2	0	0	0	0	copy fasta	SP1	chr12	53375176	53421446
SP1_chr12_53375176_53421446	0/0	t0022	5317	2	0	0	2	0	0	copy fasta	SP1	chr12	53375176	53421446
SP1_chr12_53375176_53421446	0/0	t0023	5321	2	0	2	0	0	0	copy fasta	SP1	chr12	53375176	53421446
SP1_chr12_53375176_53421446	0/0	t0024	5322	2	0	0	2	0	0	copy fasta	SP1	chr12	53375176	53421446
SP1_chr12_53375176_53421446	0/0	t0025	5323	2	2	0	0	0	0	copy fasta	SP1	chr12	53375176	53421446
SP1_chr12_53375176_53421446	0/0	t0026	5325	2	0	1	0	1	0	copy fasta	SP1	chr12	53375176	53421446
SP1_chr12_53375176_53421446	0/0	t0027	5312	2	2	0	0	0	0	copy fasta	SP1	chr12	53375176	53421446
SP1_chr12_53375176_53421446	0/0	t0028	5313	2	0	1	1	0	0	copy fasta	SP1	chr12	53375176	53421446
SP1_chr12_53375176_53421446	0/0	t0029	5313	2	0	0	2	0	0	copy fasta	SP1	chr12	53375176	53421446
SP1_chr12_53375176_53421446	0/0	t0030	5317	2	2	0	0	0	0	copy fasta	SP1	chr12	53375176	53421446
SP1_chr12_53375176_53421446	0/0	t0031	5313	2	2	0	0	0	0	copy fasta	SP1	chr12	53375176	53421446
SP1_chr12_53375176_53421446	0/0	t0032	5324	2	1	1	0	0	0	copy fasta	SP1	chr12	53375176	53421446
SP1_chr12_53375176_53421446	0/0	t0033	5321	2	2	0	0	0	0	copy fasta	SP1	chr12	53375176	53421446
SP1_chr12_53375176_53421446	0/0	t0034	5317	1	1	0	0	0	0	copy fasta	SP1	chr12	53375176	53421446
SP1_chr12_53375176_53421446	0/0	t0035	5322	1	0	0	0	0	1	copy fasta	SP1	chr12	53375176	53421446
SP1_chr12_53375176_53421446	0/0	t0036	5326	1	0	0	0	0	1	copy fasta	SP1	chr12	53375176	53421446
SP1_chr12_53375176_53421446	0/0	t0037	5325	1	1	0	0	0	0	copy fasta	SP1	chr12	53375176	53421446
SP1_chr12_53375176_53421446	0/0	t0038	5327	1	1	0	0	0	0	copy fasta	SP1	chr12	53375176	53421446
SP1_chr12_53375176_53421446	0/0	t0039	5316	1	0	0	1	0	0	copy fasta	SP1	chr12	53375176	53421446
SP1_chr12_53375176_53421446	0/0	t0040	5313	1	0	0	0	0	1	copy fasta	SP1	chr12	53375176	53421446
SP1_chr12_53375176_53421446	0/0	t0041	5312	1	0	0	1	0	0	copy fasta	SP1	chr12	53375176	53421446
SP1_chr12_53375176_53421446	0/0	t0042	5315	1	1	0	0	0	0	copy fasta	SP1	chr12	53375176	53421446
SP1_chr12_53375176_53421446	0/0	t0043	5309	1	1	0	0	0	0	copy fasta	SP1	chr12	53375176	53421446
SP1_chr12_53375176_53421446	0/0	t0044	5310	1	0	0	1	0	0	copy fasta	SP1	chr12	53375176	53421446
SP1_chr12_53375176_53421446	0/0	t0045	5316	1	0	1	0	0	0	copy fasta	SP1	chr12	53375176	53421446
SP1_chr12_53375176_53421446	0/0	t0046	5318	1	0	0	0	0	1	copy fasta	SP1	chr12	53375176	53421446
SP1_chr12_53375176_53421446	0/0	t0047	5319	1	0	0	0	0	1	copy fasta	SP1	chr12	53375176	53421446
SP1_chr12_53375176_53421446	0/0	t0048	5318	1	0	0	0	1	0	copy fasta	SP1	chr12	53375176	53421446
SP1_chr12_53375176_53421446	0/0	t0049	5319	1	0	0	0	0	1	copy fasta	SP1	chr12	53375176	53421446
SP1_chr12_53375176_53421446	0/0	t0050	5320	1	0	0	1	0	0	copy fasta	SP1	chr12	53375176	53421446
SP1_chr12_53375176_53421446	0/0	t0051	5321	1	0	0	1	0	0	copy fasta	SP1	chr12	53375176	53421446
SP1_chr12_53375176_53421446	0/0	t0052	5321	1	1	0	0	0	0	copy fasta	SP1	chr12	53375176	53421446
SP1_chr12_53375176_53421446	0/0	t0053	5320	1	0	1	0	0	0	copy fasta	SP1	chr12	53375176	53421446
SP1_chr12_53375176_53421446	0/0	t0054	5321	1	0	1	0	0	0	copy fasta	SP1	chr12	53375176	53421446
SP1_chr12_53375176_53421446	0/0	t0055	5321	1	0	0	1	0	0	copy fasta	SP1	chr12	53375176	53421446
SP1_chr12_53375176_53421446	0/0	t0056	5322	1	0	0	1	0	0	copy fasta	SP1	chr12	53375176	53421446
SP1_chr12_53375176_53421446	0/0	t0057	5319	1	0	0	1	0	0	copy fasta	SP1	chr12	53375176	53421446
SP1_chr12_53375176_53421446	0/0	t0058	5319	1	0	1	0	0	0	copy fasta	SP1	chr12	53375176	53421446