JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SP3_chr2_173895775_173970373	0/0	t0010	9367	7	7	0	0	0	0	copy fasta	SP3	chr2	173895775	173970373
SP3_chr2_173895775_173970373	0/0	t0011	9361	7	4	3	0	0	0	copy fasta	SP3	chr2	173895775	173970373
SP3_chr2_173895775_173970373	0/0	t0012	9366	7	0	2	2	0	3	copy fasta	SP3	chr2	173895775	173970373
SP3_chr2_173895775_173970373	0/0	t0013	9369	6	0	0	5	0	1	copy fasta	SP3	chr2	173895775	173970373
SP3_chr2_173895775_173970373	0/1	t0014	9368	6	1	1	0	2	1	copy fasta	SP3	chr2	173895775	173970373
SP3_chr2_173895775_173970373	0/0	t0015	9368	6	0	5	0	0	1	copy fasta	SP3	chr2	173895775	173970373
SP3_chr2_173895775_173970373	0/0	t0016	9371	6	0	5	0	1	0	copy fasta	SP3	chr2	173895775	173970373
SP3_chr2_173895775_173970373	0/0	t0017	9364	5	1	4	0	0	0	copy fasta	SP3	chr2	173895775	173970373
SP3_chr2_173895775_173970373	0/0	t0018	9366	3	3	0	0	0	0	copy fasta	SP3	chr2	173895775	173970373
SP3_chr2_173895775_173970373	0/0	t0019	9368	3	0	0	3	0	0	copy fasta	SP3	chr2	173895775	173970373
SP3_chr2_173895775_173970373	0/0	t0020	9368	3	0	0	2	0	1	copy fasta	SP3	chr2	173895775	173970373
SP3_chr2_173895775_173970373	0/0	t0021	9369	3	0	1	0	0	2	copy fasta	SP3	chr2	173895775	173970373
SP3_chr2_173895775_173970373	0/0	t0022	9360	3	3	0	0	0	0	copy fasta	SP3	chr2	173895775	173970373
SP3_chr2_173895775_173970373	0/0	t0023	9371	2	0	2	0	0	0	copy fasta	SP3	chr2	173895775	173970373
SP3_chr2_173895775_173970373	0/0	t0024	9369	2	0	1	0	0	1	copy fasta	SP3	chr2	173895775	173970373
SP3_chr2_173895775_173970373	0/0	t0025	9369	2	2	0	0	0	0	copy fasta	SP3	chr2	173895775	173970373
SP3_chr2_173895775_173970373	0/0	t0026	9364	2	2	0	0	0	0	copy fasta	SP3	chr2	173895775	173970373
SP3_chr2_173895775_173970373	0/0	t0027	9365	2	1	0	1	0	0	copy fasta	SP3	chr2	173895775	173970373
SP3_chr2_173895775_173970373	0/0	t0028	9364	2	0	0	2	0	0	copy fasta	SP3	chr2	173895775	173970373
SP3_chr2_173895775_173970373	0/0	t0029	9366	2	0	0	0	0	2	copy fasta	SP3	chr2	173895775	173970373
SP3_chr2_173895775_173970373	0/0	t0030	9364	2	0	0	0	2	0	copy fasta	SP3	chr2	173895775	173970373
SP3_chr2_173895775_173970373	0/0	t0031	9364	2	0	2	0	0	0	copy fasta	SP3	chr2	173895775	173970373
SP3_chr2_173895775_173970373	0/0	t0032	9361	2	2	0	0	0	0	copy fasta	SP3	chr2	173895775	173970373
SP3_chr2_173895775_173970373	0/0	t0033	9366	2	0	0	2	0	0	copy fasta	SP3	chr2	173895775	173970373
SP3_chr2_173895775_173970373	0/0	t0034	9362	2	1	1	0	0	0	copy fasta	SP3	chr2	173895775	173970373
SP3_chr2_173895775_173970373	0/0	t0035	9368	1	0	0	0	0	1	copy fasta	SP3	chr2	173895775	173970373
SP3_chr2_173895775_173970373	0/0	t0036	9365	1	0	1	0	0	0	copy fasta	SP3	chr2	173895775	173970373
SP3_chr2_173895775_173970373	0/0	t0037	9366	1	0	1	0	0	0	copy fasta	SP3	chr2	173895775	173970373
SP3_chr2_173895775_173970373	0/0	t0038	9368	1	1	0	0	0	0	copy fasta	SP3	chr2	173895775	173970373
SP3_chr2_173895775_173970373	0/0	t0039	9368	1	0	1	0	0	0	copy fasta	SP3	chr2	173895775	173970373
SP3_chr2_173895775_173970373	0/0	t0040	9369	1	0	1	0	0	0	copy fasta	SP3	chr2	173895775	173970373
SP3_chr2_173895775_173970373	0/0	t0041	9370	1	0	0	1	0	0	copy fasta	SP3	chr2	173895775	173970373
SP3_chr2_173895775_173970373	0/0	t0042	9364	1	0	0	1	0	0	copy fasta	SP3	chr2	173895775	173970373
SP3_chr2_173895775_173970373	0/0	t0043	9369	1	0	0	1	0	0	copy fasta	SP3	chr2	173895775	173970373
SP3_chr2_173895775_173970373	0/0	t0044	9369	1	0	0	1	0	0	copy fasta	SP3	chr2	173895775	173970373
SP3_chr2_173895775_173970373	0/0	t0045	9367	1	0	0	1	0	0	copy fasta	SP3	chr2	173895775	173970373
SP3_chr2_173895775_173970373	0/0	t0046	9368	1	1	0	0	0	0	copy fasta	SP3	chr2	173895775	173970373
SP3_chr2_173895775_173970373	0/0	t0047	9368	1	1	0	0	0	0	copy fasta	SP3	chr2	173895775	173970373
SP3_chr2_173895775_173970373	0/0	t0048	9364	1	0	0	0	0	1	copy fasta	SP3	chr2	173895775	173970373
SP3_chr2_173895775_173970373	0/0	t0049	9368	1	0	0	0	0	1	copy fasta	SP3	chr2	173895775	173970373
SP3_chr2_173895775_173970373	0/0	t0050	9371	1	0	0	0	1	0	copy fasta	SP3	chr2	173895775	173970373
SP3_chr2_173895775_173970373	0/0	t0051	9369	1	1	0	0	0	0	copy fasta	SP3	chr2	173895775	173970373
SP3_chr2_173895775_173970373	0/0	t0052	9369	1	0	0	0	0	1	copy fasta	SP3	chr2	173895775	173970373
SP3_chr2_173895775_173970373	0/0	t0053	9361	1	1	0	0	0	0	copy fasta	SP3	chr2	173895775	173970373
SP3_chr2_173895775_173970373	0/0	t0054	9362	1	0	0	0	1	0	copy fasta	SP3	chr2	173895775	173970373
SP3_chr2_173895775_173970373	0/0	t0055	9364	1	1	0	0	0	0	copy fasta	SP3	chr2	173895775	173970373
SP3_chr2_173895775_173970373	0/0	t0056	9364	1	0	1	0	0	0	copy fasta	SP3	chr2	173895775	173970373
SP3_chr2_173895775_173970373	0/0	t0057	9365	1	0	0	1	0	0	copy fasta	SP3	chr2	173895775	173970373
SP3_chr2_173895775_173970373	0/0	t0058	9368	1	0	0	1	0	0	copy fasta	SP3	chr2	173895775	173970373
SP3_chr2_173895775_173970373	0/0	t0059	9369	1	0	0	1	0	0	copy fasta	SP3	chr2	173895775	173970373