JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SP3_chr2_173895775_173970373	0/0	t0060	9365	1	0	0	1	0	0	copy fasta	SP3	chr2	173895775	173970373
SP3_chr2_173895775_173970373	1/0	t0061	9369	1	0	0	0	0	0	copy fasta	SP3	chr2	173895775	173970373
SP3_chr2_173895775_173970373	0/0	t0062	9364	1	0	0	1	0	0	copy fasta	SP3	chr2	173895775	173970373
SP3_chr2_173895775_173970373	0/0	t0063	9364	1	0	0	1	0	0	copy fasta	SP3	chr2	173895775	173970373
SP3_chr2_173895775_173970373	0/0	t0064	9368	1	0	1	0	0	0	copy fasta	SP3	chr2	173895775	173970373
SP3_chr2_173895775_173970373	0/0	t0065	9364	1	0	0	0	0	1	copy fasta	SP3	chr2	173895775	173970373
SP3_chr2_173895775_173970373	0/0	t0066	9368	1	0	0	1	0	0	copy fasta	SP3	chr2	173895775	173970373
SP3_chr2_173895775_173970373	0/0	t0067	9364	1	0	1	0	0	0	copy fasta	SP3	chr2	173895775	173970373
SP3_chr2_173895775_173970373	0/0	t0068	9367	1	1	0	0	0	0	copy fasta	SP3	chr2	173895775	173970373
SP3_chr2_173895775_173970373	0/0	t0069	9364	1	0	1	0	0	0	copy fasta	SP3	chr2	173895775	173970373
SP3_chr2_173895775_173970373	0/0	t0070	9368	1	0	0	0	0	1	copy fasta	SP3	chr2	173895775	173970373
SP3_chr2_173895775_173970373	0/0	t0071	9368	1	1	0	0	0	0	copy fasta	SP3	chr2	173895775	173970373
SP3_chr2_173895775_173970373	0/0	t0072	9368	1	0	0	1	0	0	copy fasta	SP3	chr2	173895775	173970373
SP3_chr2_173895775_173970373	0/0	t0073	9364	1	0	1	0	0	0	copy fasta	SP3	chr2	173895775	173970373
SP3_chr2_173895775_173970373	0/0	t0074	9367	1	1	0	0	0	0	copy fasta	SP3	chr2	173895775	173970373
SP3_chr2_173895775_173970373	0/0	t0075	9368	1	1	0	0	0	0	copy fasta	SP3	chr2	173895775	173970373
SP3_chr2_173895775_173970373	0/0	t0076	9367	1	1	0	0	0	0	copy fasta	SP3	chr2	173895775	173970373
SP3_chr2_173895775_173970373	0/0	t0077	9369	1	1	0	0	0	0	copy fasta	SP3	chr2	173895775	173970373
SP3_chr2_173895775_173970373	0/0	t0078	9362	1	0	1	0	0	0	copy fasta	SP3	chr2	173895775	173970373
SP3_chr2_173895775_173970373	0/0	t0079	9361	1	0	0	0	0	1	copy fasta	SP3	chr2	173895775	173970373
SP3_chr2_173895775_173970373	0/0	t0080	9363	1	0	1	0	0	0	copy fasta	SP3	chr2	173895775	173970373
SP3_chr2_173895775_173970373	0/0	t0081	9362	1	0	0	0	0	1	copy fasta	SP3	chr2	173895775	173970373
SP3_chr2_173895775_173970373	0/0	t0082	9363	1	0	1	0	0	0	copy fasta	SP3	chr2	173895775	173970373
SP3_chr2_173895775_173970373	0/0	t0083	9362	1	1	0	0	0	0	copy fasta	SP3	chr2	173895775	173970373
SP3_chr2_173895775_173970373	0/0	t0084	9362	1	0	1	0	0	0	copy fasta	SP3	chr2	173895775	173970373
SP3_chr2_173895775_173970373	0/0	t0085	9368	1	1	0	0	0	0	copy fasta	SP3	chr2	173895775	173970373
SP3_chr2_173895775_173970373	0/0	t0086	9360	1	1	0	0	0	0	copy fasta	SP3	chr2	173895775	173970373
SP3_chr2_173895775_173970373	0/0	t0087	9361	1	1	0	0	0	0	copy fasta	SP3	chr2	173895775	173970373
SP3_chr2_173895775_173970373	0/0	t0088	9361	1	0	1	0	0	0	copy fasta	SP3	chr2	173895775	173970373
SP3_chr2_173895775_173970373	0/0	t0089	9360	1	1	0	0	0	0	copy fasta	SP3	chr2	173895775	173970373
SP3_chr2_173895775_173970373	0/0	t0090	9367	1	0	0	1	0	0	copy fasta	SP3	chr2	173895775	173970373
SP3_chr2_173895775_173970373	0/0	t0091	9364	1	0	0	1	0	0	copy fasta	SP3	chr2	173895775	173970373
SP3_chr2_173895775_173970373	0/0	t0092	9371	1	0	1	0	0	0	copy fasta	SP3	chr2	173895775	173970373
SP3_chr2_173895775_173970373	0/0	t0093	9370	1	0	1	0	0	0	copy fasta	SP3	chr2	173895775	173970373
SP3_chr2_173895775_173970373	0/0	t0094	9364	1	0	1	0	0	0	copy fasta	SP3	chr2	173895775	173970373
SP3_chr2_173895775_173970373	0/0	t0095	9364	1	0	1	0	0	0	copy fasta	SP3	chr2	173895775	173970373
SP3_chr2_173895775_173970373	0/0	t0096	9362	1	1	0	0	0	0	copy fasta	SP3	chr2	173895775	173970373
SP3_chr2_173895775_173970373	0/0	t0097	9367	1	1	0	0	0	0	copy fasta	SP3	chr2	173895775	173970373
SP3_chr2_173895775_173970373	0/0	t0098	9367	1	1	0	0	0	0	copy fasta	SP3	chr2	173895775	173970373
SP4_chr7_21423083_21519822	0/0	t0001	3727	50	15	8	12	2	13	copy fasta	SP4	chr7	21423083	21519822
SP4_chr7_21423083_21519822	1/0	t0002	3723	49	1	18	15	4	10	copy fasta	SP4	chr7	21423083	21519822
SP4_chr7_21423083_21519822	0/0	t0003	3726	44	10	2	30	0	2	copy fasta	SP4	chr7	21423083	21519822
SP4_chr7_21423083_21519822	0/0	t0004	3726	34	0	0	32	1	1	copy fasta	SP4	chr7	21423083	21519822
SP4_chr7_21423083_21519822	0/0	t0005	3725	32	2	17	13	0	0	copy fasta	SP4	chr7	21423083	21519822
SP4_chr7_21423083_21519822	0/0	t0006	3728	29	1	1	27	0	0	copy fasta	SP4	chr7	21423083	21519822
SP4_chr7_21423083_21519822	0/0	t0007	3726	20	2	9	2	3	4	copy fasta	SP4	chr7	21423083	21519822
SP4_chr7_21423083_21519822	0/0	t0008	3727	17	17	0	0	0	0	copy fasta	SP4	chr7	21423083	21519822
SP4_chr7_21423083_21519822	0/0	t0009	3724	15	0	2	11	0	2	copy fasta	SP4	chr7	21423083	21519822
SP4_chr7_21423083_21519822	0/0	t0010	3728	12	4	0	5	0	3	copy fasta	SP4	chr7	21423083	21519822
SP4_chr7_21423083_21519822	0/0	t0011	3724	10	0	2	8	0	0	copy fasta	SP4	chr7	21423083	21519822