JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SPANXA1_chrX_141578674_141589738	0/0	t0001	125	135	27	21	75	0	12	copy fasta	SPANXA1	chrX	141578674	141589738
SPANXA1_chrX_141578674_141589738	0/0	t0002	125	7	2	1	4	0	0	copy fasta	SPANXA1	chrX	141578674	141589738
SPANXA1_chrX_141578674_141589738	0/0	t0003	125	6	5	0	1	0	0	copy fasta	SPANXA1	chrX	141578674	141589738
SPANXA1_chrX_141578674_141589738	0/0	t0004	125	6	6	0	0	0	0	copy fasta	SPANXA1	chrX	141578674	141589738
SPANXA1_chrX_141578674_141589738	0/0	t0005	125	3	3	0	0	0	0	copy fasta	SPANXA1	chrX	141578674	141589738
SPANXA2_chrX_141584708_141595762	0/0	t0000	0	2	0	0	2	0	0	copy fasta	SPANXA2	chrX	141584708	141595762
SPANXA2_chrX_141584708_141595762	0/0	t0001	115	151	25	17	95	2	12	copy fasta	SPANXA2	chrX	141584708	141595762
SPANXA2_chrX_141584708_141595762	0/0	t0002	115	22	8	5	8	0	1	copy fasta	SPANXA2	chrX	141584708	141595762
SPANXA2_chrX_141584708_141595762	0/0	t0003	115	3	3	0	0	0	0	copy fasta	SPANXA2	chrX	141584708	141595762
SPANXA2_chrX_141584708_141595762	0/0	t0004	115	3	3	0	0	0	0	copy fasta	SPANXA2	chrX	141584708	141595762
SPANXA2_chrX_141584708_141595762	0/0	t0005	115	1	1	0	0	0	0	copy fasta	SPANXA2	chrX	141584708	141595762
SPANXA2_chrX_141584708_141595762	0/0	t0006	114	1	0	0	1	0	0	copy fasta	SPANXA2	chrX	141584708	141595762
SPANXA2_chrX_141584708_141595762	0/0	t0007	115	1	1	0	0	0	0	copy fasta	SPANXA2	chrX	141584708	141595762
SPANXA2_chrX_141584708_141595762	0/0	t0008	115	1	1	0	0	0	0	copy fasta	SPANXA2	chrX	141584708	141595762
SPANXB1_chrX_140997594_141008706	1/1	t0001	155	295	62	60	131	11	29	copy fasta	SPANXB1	chrX	140997594	141008706
SPANXB1_chrX_140997594_141008706	0/0	t0002	155	2	0	0	2	0	0	copy fasta	SPANXB1	chrX	140997594	141008706
SPANXB1_chrX_140997594_141008706	0/0	t0003	155	1	0	0	1	0	0	copy fasta	SPANXB1	chrX	140997594	141008706
SPANXB1_chrX_140997594_141008706	0/0	t0004	155	1	0	0	0	0	1	copy fasta	SPANXB1	chrX	140997594	141008706
SPANXB1_chrX_140997594_141008706	0/0	t0005	155	1	0	0	1	0	0	copy fasta	SPANXB1	chrX	140997594	141008706
SPANXB1_chrX_140997594_141008706	0/0	t0006	154	1	0	0	1	0	0	copy fasta	SPANXB1	chrX	140997594	141008706
SPANXC_chrX_141236463_141247517	0/0	t0001	115	210	14	38	133	7	18	copy fasta	SPANXC	chrX	141236463	141247517
SPANXC_chrX_141236463_141247517	0/0	t0002	115	77	35	11	18	4	9	copy fasta	SPANXC	chrX	141236463	141247517
SPANXC_chrX_141236463_141247517	0/0	t0003	115	33	14	4	12	0	3	copy fasta	SPANXC	chrX	141236463	141247517
SPANXC_chrX_141236463_141247517	0/0	t0004	115	12	10	2	0	0	0	copy fasta	SPANXC	chrX	141236463	141247517
SPANXC_chrX_141236463_141247517	0/0	t0005	115	3	1	2	0	0	0	copy fasta	SPANXC	chrX	141236463	141247517
SPANXC_chrX_141236463_141247517	0/0	t0006	115	3	3	0	0	0	0	copy fasta	SPANXC	chrX	141236463	141247517
SPANXC_chrX_141236463_141247517	0/0	t0007	115	2	0	0	2	0	0	copy fasta	SPANXC	chrX	141236463	141247517
SPANXC_chrX_141236463_141247517	0/0	t0008	115	1	0	0	1	0	0	copy fasta	SPANXC	chrX	141236463	141247517
SPANXC_chrX_141236463_141247517	0/0	t0009	115	1	0	1	0	0	0	copy fasta	SPANXC	chrX	141236463	141247517
SPANXC_chrX_141236463_141247517	0/0	t0010	115	1	0	0	1	0	0	copy fasta	SPANXC	chrX	141236463	141247517
SPANXC_chrX_141236463_141247517	0/0	t0011	115	1	1	0	0	0	0	copy fasta	SPANXC	chrX	141236463	141247517
SPANXD_chrX_141692411_141703739	0/0	t0001	389	150	2	42	87	9	10	copy fasta	SPANXD	chrX	141692411	141703739
SPANXD_chrX_141692411_141703739	0/0	t0002	389	91	21	7	45	2	16	copy fasta	SPANXD	chrX	141692411	141703739
SPANXD_chrX_141692411_141703739	0/0	t0003	389	38	29	4	4	0	1	copy fasta	SPANXD	chrX	141692411	141703739
SPANXD_chrX_141692411_141703739	0/0	t0004	389	22	13	7	0	0	2	copy fasta	SPANXD	chrX	141692411	141703739
SPANXD_chrX_141692411_141703739	0/0	t0005	389	5	5	0	0	0	0	copy fasta	SPANXD	chrX	141692411	141703739
SPANXD_chrX_141692411_141703739	0/0	t0006	389	3	3	0	0	0	0	copy fasta	SPANXD	chrX	141692411	141703739
SPANXD_chrX_141692411_141703739	0/0	t0007	388	3	0	0	3	0	0	copy fasta	SPANXD	chrX	141692411	141703739
SPANXD_chrX_141692411_141703739	0/0	t0008	389	3	0	0	3	0	0	copy fasta	SPANXD	chrX	141692411	141703739
SPANXD_chrX_141692411_141703739	0/0	t0009	389	3	3	0	0	0	0	copy fasta	SPANXD	chrX	141692411	141703739
SPANXD_chrX_141692411_141703739	0/0	t0010	389	2	0	0	1	0	1	copy fasta	SPANXD	chrX	141692411	141703739
SPANXD_chrX_141692411_141703739	0/0	t0011	389	2	2	0	0	0	0	copy fasta	SPANXD	chrX	141692411	141703739
SPANXD_chrX_141692411_141703739	0/0	t0012	389	1	0	0	1	0	0	copy fasta	SPANXD	chrX	141692411	141703739
SPANXD_chrX_141692411_141703739	0/0	t0013	389	1	1	0	0	0	0	copy fasta	SPANXD	chrX	141692411	141703739
SPANXD_chrX_141692411_141703739	0/0	t0014	389	1	0	0	1	0	0	copy fasta	SPANXD	chrX	141692411	141703739
SPANXD_chrX_141692411_141703739	0/0	t0015	388	1	0	1	0	0	0	copy fasta	SPANXD	chrX	141692411	141703739
SPANXD_chrX_141692411_141703739	0/0	t0016	388	1	0	0	1	0	0	copy fasta	SPANXD	chrX	141692411	141703739
SPANXD_chrX_141692411_141703739	0/0	t0017	389	1	0	1	0	0	0	copy fasta	SPANXD	chrX	141692411	141703739
SPANXD_chrX_141692411_141703739	0/0	t0018	389	1	0	0	1	0	0	copy fasta	SPANXD	chrX	141692411	141703739
SPANXD_chrX_141692411_141703739	0/0	t0019	389	1	0	0	1	0	0	copy fasta	SPANXD	chrX	141692411	141703739