JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SPATA18_chr4_52046304_52102299	0/0	t0017	2814	1	0	0	0	0	1	copy fasta	SPATA18	chr4	52046304	52102299
SPATA18_chr4_52046304_52102299	0/0	t0018	2814	1	0	0	0	0	1	copy fasta	SPATA18	chr4	52046304	52102299
SPATA18_chr4_52046304_52102299	0/0	t0019	2814	1	1	0	0	0	0	copy fasta	SPATA18	chr4	52046304	52102299
SPATA18_chr4_52046304_52102299	0/0	t0020	2815	1	1	0	0	0	0	copy fasta	SPATA18	chr4	52046304	52102299
SPATA18_chr4_52046304_52102299	0/0	t0021	2815	1	1	0	0	0	0	copy fasta	SPATA18	chr4	52046304	52102299
SPATA19_chr11_133835631_133850513	1/1	t0001	370	243	91	50	62	8	30	copy fasta	SPATA19	chr11	133835631	133850513
SPATA19_chr11_133835631_133850513	0/0	t0002	370	118	3	23	72	6	14	copy fasta	SPATA19	chr11	133835631	133850513
SPATA19_chr11_133835631_133850513	0/0	t0003	370	1	0	1	0	0	0	copy fasta	SPATA19	chr11	133835631	133850513
SPATA1_chr1_84501386_84572379	1/1	t0001	1661	178	47	33	71	8	17	copy fasta	SPATA1	chr1	84501386	84572379
SPATA1_chr1_84501386_84572379	0/0	t0002	1661	34	0	0	32	0	2	copy fasta	SPATA1	chr1	84501386	84572379
SPATA1_chr1_84501386_84572379	0/0	t0003	1661	30	10	6	7	1	6	copy fasta	SPATA1	chr1	84501386	84572379
SPATA1_chr1_84501386_84572379	0/0	t0004	1662	25	6	6	11	1	1	copy fasta	SPATA1	chr1	84501386	84572379
SPATA1_chr1_84501386_84572379	0/0	t0005	1661	12	6	6	0	0	0	copy fasta	SPATA1	chr1	84501386	84572379
SPATA1_chr1_84501386_84572379	0/0	t0006	1661	9	9	0	0	0	0	copy fasta	SPATA1	chr1	84501386	84572379
SPATA1_chr1_84501386_84572379	0/0	t0007	1661	9	2	3	4	0	0	copy fasta	SPATA1	chr1	84501386	84572379
SPATA1_chr1_84501386_84572379	0/0	t0008	1661	4	4	0	0	0	0	copy fasta	SPATA1	chr1	84501386	84572379
SPATA1_chr1_84501386_84572379	0/0	t0009	1662	3	0	0	3	0	0	copy fasta	SPATA1	chr1	84501386	84572379
SPATA1_chr1_84501386_84572379	0/0	t0010	1661	2	0	0	2	0	0	copy fasta	SPATA1	chr1	84501386	84572379
SPATA1_chr1_84501386_84572379	0/0	t0011	1661	2	0	0	2	0	0	copy fasta	SPATA1	chr1	84501386	84572379
SPATA1_chr1_84501386_84572379	0/0	t0012	1661	2	0	0	0	0	2	copy fasta	SPATA1	chr1	84501386	84572379
SPATA1_chr1_84501386_84572379	0/0	t0013	1661	1	1	0	0	0	0	copy fasta	SPATA1	chr1	84501386	84572379
SPATA1_chr1_84501386_84572379	0/0	t0014	1661	1	1	0	0	0	0	copy fasta	SPATA1	chr1	84501386	84572379
SPATA20_chr17_50542174_50560852	1/1	t0001	226	311	85	70	95	17	42	copy fasta	SPATA20	chr17	50542174	50560852
SPATA20_chr17_50542174_50560852	0/0	t0002	226	22	9	6	5	1	1	copy fasta	SPATA20	chr17	50542174	50560852
SPATA20_chr17_50542174_50560852	0/0	t0003	226	1	0	0	0	0	1	copy fasta	SPATA20	chr17	50542174	50560852
SPATA21_chr1_16393643_16442424	1/0	t0001	606	259	52	62	94	12	38	copy fasta	SPATA21	chr1	16393643	16442424
SPATA21_chr1_16393643_16442424	0/1	t0002	605	84	34	9	34	1	5	copy fasta	SPATA21	chr1	16393643	16442424
SPATA21_chr1_16393643_16442424	0/0	t0003	606	2	0	2	0	0	0	copy fasta	SPATA21	chr1	16393643	16442424
SPATA21_chr1_16393643_16442424	0/0	t0004	606	2	0	1	0	1	0	copy fasta	SPATA21	chr1	16393643	16442424
SPATA21_chr1_16393643_16442424	0/0	t0005	605	2	2	0	0	0	0	copy fasta	SPATA21	chr1	16393643	16442424
SPATA21_chr1_16393643_16442424	0/0	t0006	606	1	1	0	0	0	0	copy fasta	SPATA21	chr1	16393643	16442424
SPATA21_chr1_16393643_16442424	0/0	t0007	606	1	0	0	0	0	1	copy fasta	SPATA21	chr1	16393643	16442424
SPATA21_chr1_16393643_16442424	0/0	t0008	606	1	1	0	0	0	0	copy fasta	SPATA21	chr1	16393643	16442424
SPATA22_chr17_3435019_3476819	1/1	t0001	340	374	83	56	188	11	34	copy fasta	SPATA22	chr17	3435019	3476819
SPATA22_chr17_3435019_3476819	0/0	t0002	340	43	15	17	0	3	8	copy fasta	SPATA22	chr17	3435019	3476819
SPATA22_chr17_3435019_3476819	0/0	t0003	340	2	1	1	0	0	0	copy fasta	SPATA22	chr17	3435019	3476819
SPATA22_chr17_3435019_3476819	0/0	t0004	340	1	1	0	0	0	0	copy fasta	SPATA22	chr17	3435019	3476819
SPATA24_chr5_139391767_139409089	1/1	t0001	63	336	82	62	142	14	34	copy fasta	SPATA24	chr5	139391767	139409089
SPATA25_chr20_45881491_45892622	1/1	t0001	59	405	88	65	194	16	40	copy fasta	SPATA25	chr20	45881491	45892622
SPATA25_chr20_45881491_45892622	0/0	t0002	59	1	0	1	0	0	0	copy fasta	SPATA25	chr20	45881491	45892622
SPATA2L_chr16_89691357_89706705	0/1	t0001	1056	178	51	25	77	4	20	copy fasta	SPATA2L	chr16	89691357	89706705
SPATA2L_chr16_89691357_89706705	0/0	t0002	1056	78	2	17	51	0	8	copy fasta	SPATA2L	chr16	89691357	89706705
SPATA2L_chr16_89691357_89706705	0/0	t0003	1056	47	4	21	5	11	6	copy fasta	SPATA2L	chr16	89691357	89706705
SPATA2L_chr16_89691357_89706705	0/0	t0004	1055	29	0	0	27	0	2	copy fasta	SPATA2L	chr16	89691357	89706705
SPATA2L_chr16_89691357_89706705	0/0	t0005	1056	28	16	5	0	2	5	copy fasta	SPATA2L	chr16	89691357	89706705
SPATA2L_chr16_89691357_89706705	0/0	t0006	1056	8	5	1	1	1	0	copy fasta	SPATA2L	chr16	89691357	89706705
SPATA2L_chr16_89691357_89706705	1/0	t0007	1056	7	4	2	0	0	0	copy fasta	SPATA2L	chr16	89691357	89706705
SPATA2L_chr16_89691357_89706705	0/0	t0008	1056	5	0	5	0	0	0	copy fasta	SPATA2L	chr16	89691357	89706705
SPATA2L_chr16_89691357_89706705	0/0	t0009	1056	5	5	0	0	0	0	copy fasta	SPATA2L	chr16	89691357	89706705
SPATA2L_chr16_89691357_89706705	0/0	t0010	1056	5	0	0	1	0	4	copy fasta	SPATA2L	chr16	89691357	89706705