JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SPATA2_chr20_49898391_49920529	0/0	t0083	2467	1	1	0	0	0	0	copy fasta	SPATA2	chr20	49898391	49920529
SPATA2_chr20_49898391_49920529	0/0	t0084	2469	1	1	0	0	0	0	copy fasta	SPATA2	chr20	49898391	49920529
SPATA2_chr20_49898391_49920529	0/0	t0085	2461	1	0	0	1	0	0	copy fasta	SPATA2	chr20	49898391	49920529
SPATA2_chr20_49898391_49920529	0/0	t0086	2461	1	0	0	1	0	0	copy fasta	SPATA2	chr20	49898391	49920529
SPATA2_chr20_49898391_49920529	0/0	t0087	2453	1	1	0	0	0	0	copy fasta	SPATA2	chr20	49898391	49920529
SPATA2_chr20_49898391_49920529	0/0	t0088	2451	1	1	0	0	0	0	copy fasta	SPATA2	chr20	49898391	49920529
SPATA2_chr20_49898391_49920529	0/0	t0089	2461	1	0	0	1	0	0	copy fasta	SPATA2	chr20	49898391	49920529
SPATA2_chr20_49898391_49920529	0/0	t0090	2465	1	0	0	1	0	0	copy fasta	SPATA2	chr20	49898391	49920529
SPATA2_chr20_49898391_49920529	0/0	t0091	2453	1	0	0	1	0	0	copy fasta	SPATA2	chr20	49898391	49920529
SPATA2_chr20_49898391_49920529	0/0	t0092	2461	1	0	0	1	0	0	copy fasta	SPATA2	chr20	49898391	49920529
SPATA2_chr20_49898391_49920529	0/0	t0093	2459	1	0	0	1	0	0	copy fasta	SPATA2	chr20	49898391	49920529
SPATA2_chr20_49898391_49920529	0/0	t0094	2461	1	0	0	1	0	0	copy fasta	SPATA2	chr20	49898391	49920529
SPATA2_chr20_49898391_49920529	0/0	t0095	2461	1	0	1	0	0	0	copy fasta	SPATA2	chr20	49898391	49920529
SPATA2_chr20_49898391_49920529	0/0	t0096	2475	1	0	0	1	0	0	copy fasta	SPATA2	chr20	49898391	49920529
SPATA2_chr20_49898391_49920529	0/0	t0097	2465	1	0	0	1	0	0	copy fasta	SPATA2	chr20	49898391	49920529
SPATA2_chr20_49898391_49920529	0/0	t0098	2453	1	0	0	1	0	0	copy fasta	SPATA2	chr20	49898391	49920529
SPATA2_chr20_49898391_49920529	0/0	t0099	2479	1	1	0	0	0	0	copy fasta	SPATA2	chr20	49898391	49920529
SPATA31A1_chr9_39350669_39366962	1/0	t0001	216	311	36	52	195	4	23	copy fasta	SPATA31A1	chr9	39350669	39366962
SPATA31A1_chr9_39350669_39366962	0/1	t0002	216	103	31	32	15	6	18	copy fasta	SPATA31A1	chr9	39350669	39366962
SPATA31A1_chr9_39350669_39366962	0/0	t0003	216	2	2	0	0	0	0	copy fasta	SPATA31A1	chr9	39350669	39366962
SPATA31A1_chr9_39350669_39366962	0/0	t0004	216	2	0	0	1	0	1	copy fasta	SPATA31A1	chr9	39350669	39366962
SPATA31A1_chr9_39350669_39366962	0/0	t0005	216	2	2	0	0	0	0	copy fasta	SPATA31A1	chr9	39350669	39366962
SPATA31A1_chr9_39350669_39366962	0/0	t0006	216	1	1	0	0	0	0	copy fasta	SPATA31A1	chr9	39350669	39366962
SPATA31A1_chr9_39350669_39366962	0/0	t0007	216	1	1	0	0	0	0	copy fasta	SPATA31A1	chr9	39350669	39366962
SPATA31A1_chr9_39350669_39366962	0/0	t0008	216	1	0	0	1	0	0	copy fasta	SPATA31A1	chr9	39350669	39366962
SPATA31A1_chr9_39350669_39366962	0/0	t0009	216	1	1	0	0	0	0	copy fasta	SPATA31A1	chr9	39350669	39366962
SPATA31A3_chr9_66981304_66997550	0/0	t0001	180	400	84	79	178	16	43	copy fasta	SPATA31A3	chr9	66981304	66997550
SPATA31A3_chr9_66981304_66997550	0/0	t0002	180	4	1	2	0	0	1	copy fasta	SPATA31A3	chr9	66981304	66997550
SPATA31A3_chr9_66981304_66997550	0/0	t0003	180	1	0	1	0	0	0	copy fasta	SPATA31A3	chr9	66981304	66997550
SPATA31A3_chr9_66981304_66997550	0/0	t0004	180	1	1	0	0	0	0	copy fasta	SPATA31A3	chr9	66981304	66997550
SPATA31A6_chr9_42178659_42194887	0/0	t0001	183	78	9	18	36	6	9	copy fasta	SPATA31A6	chr9	42178659	42194887
SPATA31A6_chr9_42178659_42194887	1/1	t0002	183	69	15	21	15	5	11	copy fasta	SPATA31A6	chr9	42178659	42194887
SPATA31A6_chr9_42178659_42194887	0/0	t0003	183	18	9	1	4	3	1	copy fasta	SPATA31A6	chr9	42178659	42194887
SPATA31A6_chr9_42178659_42194887	0/0	t0004	183	7	0	0	6	0	1	copy fasta	SPATA31A6	chr9	42178659	42194887
SPATA31A6_chr9_42178659_42194887	0/0	t0005	183	2	0	0	2	0	0	copy fasta	SPATA31A6	chr9	42178659	42194887
SPATA31A6_chr9_42178659_42194887	0/0	t0006	183	2	2	0	0	0	0	copy fasta	SPATA31A6	chr9	42178659	42194887
SPATA31A6_chr9_42178659_42194887	0/0	t0007	183	1	0	0	1	0	0	copy fasta	SPATA31A6	chr9	42178659	42194887
SPATA31A6_chr9_42178659_42194887	0/0	t0008	183	1	0	1	0	0	0	copy fasta	SPATA31A6	chr9	42178659	42194887
SPATA31A6_chr9_42178659_42194887	0/0	t0009	183	1	1	0	0	0	0	copy fasta	SPATA31A6	chr9	42178659	42194887
SPATA31A6_chr9_42178659_42194887	0/0	t0010	183	1	0	1	0	0	0	copy fasta	SPATA31A6	chr9	42178659	42194887
SPATA31A6_chr9_42178659_42194887	0/0	t0011	183	1	1	0	0	0	0	copy fasta	SPATA31A6	chr9	42178659	42194887
SPATA31A6_chr9_42178659_42194887	0/0	t0012	183	1	1	0	0	0	0	copy fasta	SPATA31A6	chr9	42178659	42194887
SPATA31A7_chr9_61185036_61201280	0/1	t0001	180	193	23	50	96	4	19	copy fasta	SPATA31A7	chr9	61185036	61201280
SPATA31A7_chr9_61185036_61201280	0/0	t0002	180	18	3	3	7	0	5	copy fasta	SPATA31A7	chr9	61185036	61201280
SPATA31A7_chr9_61185036_61201280	0/0	t0003	180	4	3	1	0	0	0	copy fasta	SPATA31A7	chr9	61185036	61201280
SPATA31A7_chr9_61185036_61201280	0/0	t0004	180	3	0	0	3	0	0	copy fasta	SPATA31A7	chr9	61185036	61201280
SPATA31A7_chr9_61185036_61201280	0/0	t0005	180	2	2	0	0	0	0	copy fasta	SPATA31A7	chr9	61185036	61201280
SPATA31A7_chr9_61185036_61201280	0/0	t0006	180	1	0	0	1	0	0	copy fasta	SPATA31A7	chr9	61185036	61201280
SPATA31A7_chr9_61185036_61201280	0/0	t0007	180	1	1	0	0	0	0	copy fasta	SPATA31A7	chr9	61185036	61201280
SPATA31A7_chr9_61185036_61201280	0/0	t0008	180	1	0	0	1	0	0	copy fasta	SPATA31A7	chr9	61185036	61201280