JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SPATA31A7_chr9_61185036_61201280	0/0	t0009	180	1	1	0	0	0	0	copy fasta	SPATA31A7	chr9	61185036	61201280
SPATA31A7_chr9_61185036_61201280	0/0	t0010	180	1	1	0	0	0	0	copy fasta	SPATA31A7	chr9	61185036	61201280
SPATA31C1_chr9_87912962_87928657	1/1	t0001	213	384	90	78	148	18	48	copy fasta	SPATA31C1	chr9	87912962	87928657
SPATA31C1_chr9_87912962_87928657	0/0	t0002	213	2	0	0	2	0	0	copy fasta	SPATA31C1	chr9	87912962	87928657
SPATA31C1_chr9_87912962_87928657	0/0	t0003	184	2	0	2	0	0	0	copy fasta	SPATA31C1	chr9	87912962	87928657
SPATA31C2_chr9_88124305_88143475	1/1	t0001	357	334	88	67	120	16	41	copy fasta	SPATA31C2	chr9	88124305	88143475
SPATA31C2_chr9_88124305_88143475	0/0	t0002	357	72	3	1	65	0	3	copy fasta	SPATA31C2	chr9	88124305	88143475
SPATA31C2_chr9_88124305_88143475	0/0	t0003	328	36	3	11	16	2	4	copy fasta	SPATA31C2	chr9	88124305	88143475
SPATA31C2_chr9_88124305_88143475	0/0	t0004	357	2	0	1	1	0	0	copy fasta	SPATA31C2	chr9	88124305	88143475
SPATA31C2_chr9_88124305_88143475	0/0	t0005	328	1	0	1	0	0	0	copy fasta	SPATA31C2	chr9	88124305	88143475
SPATA31C2_chr9_88124305_88143475	0/0	t0006	328	1	0	1	0	0	0	copy fasta	SPATA31C2	chr9	88124305	88143475
SPATA31D1_chr9_81983772_82000253	1/1	t0001	100	382	96	70	158	16	40	copy fasta	SPATA31D1	chr9	81983772	82000253
SPATA31D3_chr9_81938500_81955093	0/1	t0001	2173	242	39	55	112	8	27	copy fasta	SPATA31D3	chr9	81938500	81955093
SPATA31D3_chr9_81938500_81955093	0/0	t0002	2173	26	20	1	4	0	1	copy fasta	SPATA31D3	chr9	81938500	81955093
SPATA31D3_chr9_81938500_81955093	1/0	t0003	2173	15	1	9	0	2	2	copy fasta	SPATA31D3	chr9	81938500	81955093
SPATA31D3_chr9_81938500_81955093	0/0	t0004	2173	13	0	0	13	0	0	copy fasta	SPATA31D3	chr9	81938500	81955093
SPATA31D3_chr9_81938500_81955093	0/0	t0005	2173	9	1	0	6	1	1	copy fasta	SPATA31D3	chr9	81938500	81955093
SPATA31D3_chr9_81938500_81955093	0/0	t0006	2173	7	7	0	0	0	0	copy fasta	SPATA31D3	chr9	81938500	81955093
SPATA31D3_chr9_81938500_81955093	0/0	t0007	2173	7	0	0	7	0	0	copy fasta	SPATA31D3	chr9	81938500	81955093
SPATA31D3_chr9_81938500_81955093	0/0	t0008	2173	5	0	0	5	0	0	copy fasta	SPATA31D3	chr9	81938500	81955093
SPATA31D3_chr9_81938500_81955093	0/0	t0009	2173	4	4	0	0	0	0	copy fasta	SPATA31D3	chr9	81938500	81955093
SPATA31D3_chr9_81938500_81955093	0/0	t0010	2173	4	4	0	0	0	0	copy fasta	SPATA31D3	chr9	81938500	81955093
SPATA31D3_chr9_81938500_81955093	0/0	t0011	2173	3	3	0	0	0	0	copy fasta	SPATA31D3	chr9	81938500	81955093
SPATA31D3_chr9_81938500_81955093	0/0	t0012	2173	3	3	0	0	0	0	copy fasta	SPATA31D3	chr9	81938500	81955093
SPATA31D3_chr9_81938500_81955093	0/0	t0013	2173	3	0	0	1	0	2	copy fasta	SPATA31D3	chr9	81938500	81955093
SPATA31D3_chr9_81938500_81955093	0/0	t0014	2173	2	0	1	0	1	0	copy fasta	SPATA31D3	chr9	81938500	81955093
SPATA31D3_chr9_81938500_81955093	0/0	t0015	2173	2	0	2	0	0	0	copy fasta	SPATA31D3	chr9	81938500	81955093
SPATA31D3_chr9_81938500_81955093	0/0	t0016	2173	2	0	2	0	0	0	copy fasta	SPATA31D3	chr9	81938500	81955093
SPATA31D3_chr9_81938500_81955093	0/0	t0017	2173	2	2	0	0	0	0	copy fasta	SPATA31D3	chr9	81938500	81955093
SPATA31D3_chr9_81938500_81955093	0/0	t0018	2173	2	0	0	2	0	0	copy fasta	SPATA31D3	chr9	81938500	81955093
SPATA31D3_chr9_81938500_81955093	0/0	t0019	2173	2	0	0	1	0	1	copy fasta	SPATA31D3	chr9	81938500	81955093
SPATA31D3_chr9_81938500_81955093	0/0	t0020	2173	2	2	0	0	0	0	copy fasta	SPATA31D3	chr9	81938500	81955093
SPATA31D3_chr9_81938500_81955093	0/0	t0021	2173	1	1	0	0	0	0	copy fasta	SPATA31D3	chr9	81938500	81955093
SPATA31D3_chr9_81938500_81955093	0/0	t0022	2173	1	1	0	0	0	0	copy fasta	SPATA31D3	chr9	81938500	81955093
SPATA31D3_chr9_81938500_81955093	0/0	t0023	2173	1	1	0	0	0	0	copy fasta	SPATA31D3	chr9	81938500	81955093
SPATA31D3_chr9_81938500_81955093	0/0	t0024	2184	1	1	0	0	0	0	copy fasta	SPATA31D3	chr9	81938500	81955093
SPATA31D3_chr9_81938500_81955093	0/0	t0025	2173	1	1	0	0	0	0	copy fasta	SPATA31D3	chr9	81938500	81955093
SPATA31D3_chr9_81938500_81955093	0/0	t0026	2173	1	0	1	0	0	0	copy fasta	SPATA31D3	chr9	81938500	81955093
SPATA31D3_chr9_81938500_81955093	0/0	t0027	2173	1	1	0	0	0	0	copy fasta	SPATA31D3	chr9	81938500	81955093
SPATA31D3_chr9_81938500_81955093	0/0	t0028	2173	1	0	1	0	0	0	copy fasta	SPATA31D3	chr9	81938500	81955093
SPATA31D3_chr9_81938500_81955093	0/0	t0029	2173	1	1	0	0	0	0	copy fasta	SPATA31D3	chr9	81938500	81955093
SPATA31D3_chr9_81938500_81955093	0/0	t0030	2173	1	0	0	1	0	0	copy fasta	SPATA31D3	chr9	81938500	81955093
SPATA31D3_chr9_81938500_81955093	0/0	t0031	2173	1	1	0	0	0	0	copy fasta	SPATA31D3	chr9	81938500	81955093
SPATA31D3_chr9_81938500_81955093	0/0	t0032	2173	1	0	0	1	0	0	copy fasta	SPATA31D3	chr9	81938500	81955093
SPATA31D3_chr9_81938500_81955093	0/0	t0033	2173	1	0	1	0	0	0	copy fasta	SPATA31D3	chr9	81938500	81955093
SPATA31D3_chr9_81938500_81955093	0/0	t0034	2173	1	0	0	1	0	0	copy fasta	SPATA31D3	chr9	81938500	81955093
SPATA31D3_chr9_81938500_81955093	0/0	t0035	2173	1	0	1	0	0	0	copy fasta	SPATA31D3	chr9	81938500	81955093
SPATA31D3_chr9_81938500_81955093	0/0	t0036	2173	1	0	0	0	0	1	copy fasta	SPATA31D3	chr9	81938500	81955093
SPATA31D3_chr9_81938500_81955093	0/0	t0037	2173	1	0	0	1	0	0	copy fasta	SPATA31D3	chr9	81938500	81955093
SPATA31D3_chr9_81938500_81955093	0/0	t0038	2173	1	0	0	1	0	0	copy fasta	SPATA31D3	chr9	81938500	81955093