JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SPECC1_chr17_20004359_20324026	0/0	t0091	5063	1	1	0	0	0	0	copy fasta	SPECC1	chr17	20004359	20324026
SPECC1_chr17_20004359_20324026	0/0	t0092	5064	1	0	1	0	0	0	copy fasta	SPECC1	chr17	20004359	20324026
SPECC1_chr17_20004359_20324026	0/0	t0093	5088	1	0	0	1	0	0	copy fasta	SPECC1	chr17	20004359	20324026
SPECC1_chr17_20004359_20324026	0/0	t0094	5066	1	1	0	0	0	0	copy fasta	SPECC1	chr17	20004359	20324026
SPECC1_chr17_20004359_20324026	0/0	t0095	5068	1	0	1	0	0	0	copy fasta	SPECC1	chr17	20004359	20324026
SPECC1_chr17_20004359_20324026	0/0	t0096	5062	1	1	0	0	0	0	copy fasta	SPECC1	chr17	20004359	20324026
SPECC1_chr17_20004359_20324026	0/0	t0097	5065	1	1	0	0	0	0	copy fasta	SPECC1	chr17	20004359	20324026
SPECC1_chr17_20004359_20324026	0/0	t0098	5060	1	1	0	0	0	0	copy fasta	SPECC1	chr17	20004359	20324026
SPECC1_chr17_20004359_20324026	0/0	t0099	5058	1	1	0	0	0	0	copy fasta	SPECC1	chr17	20004359	20324026
SPECC1_chr17_20004359_20324026	0/0	t0100	5059	1	1	0	0	0	0	copy fasta	SPECC1	chr17	20004359	20324026
SPECC1_chr17_20004359_20324026	0/0	t0101	5064	1	1	0	0	0	0	copy fasta	SPECC1	chr17	20004359	20324026
SPECC1_chr17_20004359_20324026	0/0	t0102	5065	1	0	1	0	0	0	copy fasta	SPECC1	chr17	20004359	20324026
SPECC1_chr17_20004359_20324026	0/0	t0103	5050	1	1	0	0	0	0	copy fasta	SPECC1	chr17	20004359	20324026
SPECC1_chr17_20004359_20324026	0/0	t0104	5062	1	1	0	0	0	0	copy fasta	SPECC1	chr17	20004359	20324026
SPECC1_chr17_20004359_20324026	0/0	t0105	5064	1	0	0	0	1	0	copy fasta	SPECC1	chr17	20004359	20324026
SPECC1_chr17_20004359_20324026	0/0	t0106	5065	1	0	0	0	1	0	copy fasta	SPECC1	chr17	20004359	20324026
SPECC1_chr17_20004359_20324026	0/0	t0107	5057	1	1	0	0	0	0	copy fasta	SPECC1	chr17	20004359	20324026
SPECC1_chr17_20004359_20324026	0/0	t0108	5055	1	1	0	0	0	0	copy fasta	SPECC1	chr17	20004359	20324026
SPECC1_chr17_20004359_20324026	0/0	t0109	5047	1	0	0	1	0	0	copy fasta	SPECC1	chr17	20004359	20324026
SPECC1_chr17_20004359_20324026	0/0	t0110	5057	1	0	0	0	0	1	copy fasta	SPECC1	chr17	20004359	20324026
SPECC1_chr17_20004359_20324026	0/0	t0111	5057	1	0	1	0	0	0	copy fasta	SPECC1	chr17	20004359	20324026
SPECC1_chr17_20004359_20324026	0/0	t0112	5057	1	0	0	0	0	1	copy fasta	SPECC1	chr17	20004359	20324026
SPECC1_chr17_20004359_20324026	0/0	t0113	5055	1	0	1	0	0	0	copy fasta	SPECC1	chr17	20004359	20324026
SPEF1_chr20_3772504_3786448	1/1	t0001	870	240	63	46	90	11	28	copy fasta	SPEF1	chr20	3772504	3786448
SPEF1_chr20_3772504_3786448	0/0	t0002	870	78	8	15	40	5	10	copy fasta	SPEF1	chr20	3772504	3786448
SPEF1_chr20_3772504_3786448	0/0	t0003	870	31	0	8	19	0	4	copy fasta	SPEF1	chr20	3772504	3786448
SPEF1_chr20_3772504_3786448	0/0	t0004	870	29	0	0	27	0	2	copy fasta	SPEF1	chr20	3772504	3786448
SPEF1_chr20_3772504_3786448	0/0	t0005	870	27	19	5	1	0	2	copy fasta	SPEF1	chr20	3772504	3786448
SPEF1_chr20_3772504_3786448	0/0	t0006	870	4	1	0	1	0	2	copy fasta	SPEF1	chr20	3772504	3786448
SPEF1_chr20_3772504_3786448	0/0	t0007	870	3	2	1	0	0	0	copy fasta	SPEF1	chr20	3772504	3786448
SPEF1_chr20_3772504_3786448	0/0	t0008	870	3	0	3	0	0	0	copy fasta	SPEF1	chr20	3772504	3786448
SPEF1_chr20_3772504_3786448	0/0	t0009	870	2	0	0	2	0	0	copy fasta	SPEF1	chr20	3772504	3786448
SPEF1_chr20_3772504_3786448	0/0	t0010	870	1	1	0	0	0	0	copy fasta	SPEF1	chr20	3772504	3786448
SPEF2_chr5_35612863_35819611	1/1	t0001	194	268	76	58	98	4	30	copy fasta	SPEF2	chr5	35612863	35819611
SPEGNB_chr2_219491131_219503287	1/1	t0001	186	367	94	72	141	14	44	copy fasta	SPEGNB	chr2	219491131	219503287
SPEGNB_chr2_219491131_219503287	0/0	t0002	186	4	2	2	0	0	0	copy fasta	SPEGNB	chr2	219491131	219503287
SPEGNB_chr2_219491131_219503287	0/0	t0003	186	4	4	0	0	0	0	copy fasta	SPEGNB	chr2	219491131	219503287
SPEGNB_chr2_219491131_219503287	0/0	t0004	186	1	0	0	1	0	0	copy fasta	SPEGNB	chr2	219491131	219503287
SPEG_chr2_219429843_219498629	1/0	t0001	979	163	46	38	54	8	16	copy fasta	SPEG	chr2	219429843	219498629
SPEG_chr2_219429843_219498629	0/1	t0002	979	118	36	23	37	2	19	copy fasta	SPEG	chr2	219429843	219498629
SPEG_chr2_219429843_219498629	0/0	t0003	979	9	9	0	0	0	0	copy fasta	SPEG	chr2	219429843	219498629
SPEG_chr2_219429843_219498629	0/0	t0004	979	4	0	0	0	0	4	copy fasta	SPEG	chr2	219429843	219498629
SPEG_chr2_219429843_219498629	0/0	t0005	979	4	3	0	0	0	1	copy fasta	SPEG	chr2	219429843	219498629
SPEG_chr2_219429843_219498629	0/0	t0006	979	2	2	0	0	0	0	copy fasta	SPEG	chr2	219429843	219498629
SPEG_chr2_219429843_219498629	0/0	t0007	979	1	0	1	0	0	0	copy fasta	SPEG	chr2	219429843	219498629
SPEG_chr2_219429843_219498629	0/0	t0008	979	1	0	0	1	0	0	copy fasta	SPEG	chr2	219429843	219498629
SPEG_chr2_219429843_219498629	0/0	t0009	979	1	0	0	1	0	0	copy fasta	SPEG	chr2	219429843	219498629
SPEG_chr2_219429843_219498629	0/0	t0010	979	1	0	0	1	0	0	copy fasta	SPEG	chr2	219429843	219498629
SPEM1_chr17_7415324_7426632	1/1	t0001	89	395	90	80	165	16	42	copy fasta	SPEM1	chr17	7415324	7426632
SPEM1_chr17_7415324_7426632	0/0	t0002	89	1	1	0	0	0	0	copy fasta	SPEM1	chr17	7415324	7426632