JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SPRED1_chr15_38247836_38362249	0/0	t0026	5940	1	0	0	1	0	0	copy fasta	SPRED1	chr15	38247836	38362249
SPRED1_chr15_38247836_38362249	0/0	t0027	5940	1	0	0	1	0	0	copy fasta	SPRED1	chr15	38247836	38362249
SPRED1_chr15_38247836_38362249	0/0	t0028	5941	1	0	0	1	0	0	copy fasta	SPRED1	chr15	38247836	38362249
SPRED1_chr15_38247836_38362249	0/0	t0029	5936	1	0	0	1	0	0	copy fasta	SPRED1	chr15	38247836	38362249
SPRED1_chr15_38247836_38362249	0/0	t0030	5936	1	0	0	1	0	0	copy fasta	SPRED1	chr15	38247836	38362249
SPRED1_chr15_38247836_38362249	0/0	t0031	5936	1	0	0	1	0	0	copy fasta	SPRED1	chr15	38247836	38362249
SPRED1_chr15_38247836_38362249	0/0	t0032	5936	1	0	0	1	0	0	copy fasta	SPRED1	chr15	38247836	38362249
SPRED1_chr15_38247836_38362249	0/0	t0033	5936	1	0	0	0	0	1	copy fasta	SPRED1	chr15	38247836	38362249
SPRED1_chr15_38247836_38362249	0/0	t0034	5936	1	0	1	0	0	0	copy fasta	SPRED1	chr15	38247836	38362249
SPRED1_chr15_38247836_38362249	0/0	t0035	5936	1	0	0	1	0	0	copy fasta	SPRED1	chr15	38247836	38362249
SPRED1_chr15_38247836_38362249	0/0	t0036	5936	1	1	0	0	0	0	copy fasta	SPRED1	chr15	38247836	38362249
SPRED1_chr15_38247836_38362249	0/0	t0037	5936	1	0	1	0	0	0	copy fasta	SPRED1	chr15	38247836	38362249
SPRED1_chr15_38247836_38362249	0/0	t0038	5936	1	0	0	1	0	0	copy fasta	SPRED1	chr15	38247836	38362249
SPRED1_chr15_38247836_38362249	0/0	t0039	5936	1	0	0	1	0	0	copy fasta	SPRED1	chr15	38247836	38362249
SPRED1_chr15_38247836_38362249	0/0	t0040	5946	1	0	0	1	0	0	copy fasta	SPRED1	chr15	38247836	38362249
SPRED1_chr15_38247836_38362249	0/0	t0041	5936	1	0	0	1	0	0	copy fasta	SPRED1	chr15	38247836	38362249
SPRED1_chr15_38247836_38362249	0/0	t0042	5932	1	0	1	0	0	0	copy fasta	SPRED1	chr15	38247836	38362249
SPRED1_chr15_38247836_38362249	0/0	t0043	5932	1	1	0	0	0	0	copy fasta	SPRED1	chr15	38247836	38362249
SPRED1_chr15_38247836_38362249	0/0	t0044	5932	1	1	0	0	0	0	copy fasta	SPRED1	chr15	38247836	38362249
SPRED1_chr15_38247836_38362249	0/0	t0045	5936	1	0	1	0	0	0	copy fasta	SPRED1	chr15	38247836	38362249
SPRED1_chr15_38247836_38362249	0/0	t0046	5936	1	1	0	0	0	0	copy fasta	SPRED1	chr15	38247836	38362249
SPRED2_chr2_65305851_65437599	0/0	t0001	3263	87	6	19	49	0	13	copy fasta	SPRED2	chr2	65305851	65437599
SPRED2_chr2_65305851_65437599	0/0	t0002	3263	73	19	17	27	2	8	copy fasta	SPRED2	chr2	65305851	65437599
SPRED2_chr2_65305851_65437599	1/0	t0003	3263	65	42	2	14	2	4	copy fasta	SPRED2	chr2	65305851	65437599
SPRED2_chr2_65305851_65437599	0/0	t0004	3263	13	2	0	6	2	3	copy fasta	SPRED2	chr2	65305851	65437599
SPRED2_chr2_65305851_65437599	0/0	t0005	3263	8	0	5	0	2	1	copy fasta	SPRED2	chr2	65305851	65437599
SPRED2_chr2_65305851_65437599	0/0	t0006	3263	7	7	0	0	0	0	copy fasta	SPRED2	chr2	65305851	65437599
SPRED2_chr2_65305851_65437599	0/0	t0007	3263	3	3	0	0	0	0	copy fasta	SPRED2	chr2	65305851	65437599
SPRED2_chr2_65305851_65437599	0/0	t0008	3263	3	0	3	0	0	0	copy fasta	SPRED2	chr2	65305851	65437599
SPRED2_chr2_65305851_65437599	0/0	t0009	3263	1	1	0	0	0	0	copy fasta	SPRED2	chr2	65305851	65437599
SPRED2_chr2_65305851_65437599	0/0	t0010	3263	1	0	1	0	0	0	copy fasta	SPRED2	chr2	65305851	65437599
SPRED2_chr2_65305851_65437599	0/1	t0011	3263	1	0	0	0	0	0	copy fasta	SPRED2	chr2	65305851	65437599
SPRED2_chr2_65305851_65437599	0/0	t0012	3263	1	1	0	0	0	0	copy fasta	SPRED2	chr2	65305851	65437599
SPRED2_chr2_65305851_65437599	0/0	t0013	3263	1	0	0	1	0	0	copy fasta	SPRED2	chr2	65305851	65437599
SPRED2_chr2_65305851_65437599	0/0	t0014	3263	1	1	0	0	0	0	copy fasta	SPRED2	chr2	65305851	65437599
SPRED2_chr2_65305851_65437599	0/0	t0015	3263	1	0	0	0	0	1	copy fasta	SPRED2	chr2	65305851	65437599
SPRED2_chr2_65305851_65437599	0/0	t0016	3263	1	0	1	0	0	0	copy fasta	SPRED2	chr2	65305851	65437599
SPRED2_chr2_65305851_65437599	0/0	t0017	3263	1	0	0	1	0	0	copy fasta	SPRED2	chr2	65305851	65437599
SPRED2_chr2_65305851_65437599	0/0	t0018	3263	1	0	0	1	0	0	copy fasta	SPRED2	chr2	65305851	65437599
SPRED2_chr2_65305851_65437599	0/0	t0019	3263	1	1	0	0	0	0	copy fasta	SPRED2	chr2	65305851	65437599
SPRED2_chr2_65305851_65437599	0/0	t0020	3263	1	0	1	0	0	0	copy fasta	SPRED2	chr2	65305851	65437599
SPRED2_chr2_65305851_65437599	0/0	t0021	3263	1	0	1	0	0	0	copy fasta	SPRED2	chr2	65305851	65437599
SPRED2_chr2_65305851_65437599	0/0	t0022	3263	1	0	0	0	0	1	copy fasta	SPRED2	chr2	65305851	65437599
SPRED2_chr2_65305851_65437599	0/0	t0023	3263	1	1	0	0	0	0	copy fasta	SPRED2	chr2	65305851	65437599
SPRED2_chr2_65305851_65437599	0/0	t0024	3263	1	0	0	0	0	1	copy fasta	SPRED2	chr2	65305851	65437599
SPRED2_chr2_65305851_65437599	0/0	t0025	3263	1	0	0	1	0	0	copy fasta	SPRED2	chr2	65305851	65437599
SPRED3_chr19_38383697_38404587	1/1	t0001	3558	192	50	43	59	12	26	copy fasta	SPRED3	chr19	38383697	38404587
SPRED3_chr19_38383697_38404587	0/0	t0002	3557	58	10	5	43	0	0	copy fasta	SPRED3	chr19	38383697	38404587
SPRED3_chr19_38383697_38404587	0/0	t0003	3558	47	1	8	32	1	5	copy fasta	SPRED3	chr19	38383697	38404587
SPRED3_chr19_38383697_38404587	0/0	t0004	3557	20	2	1	17	0	0	copy fasta	SPRED3	chr19	38383697	38404587