JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SPRED3_chr19_38383697_38404587	0/0	t0005	3556	11	0	0	11	0	0	copy fasta	SPRED3	chr19	38383697	38404587
SPRED3_chr19_38383697_38404587	0/0	t0006	3558	3	0	0	3	0	0	copy fasta	SPRED3	chr19	38383697	38404587
SPRED3_chr19_38383697_38404587	0/0	t0007	3571	3	1	1	0	0	1	copy fasta	SPRED3	chr19	38383697	38404587
SPRED3_chr19_38383697_38404587	0/0	t0008	3586	2	2	0	0	0	0	copy fasta	SPRED3	chr19	38383697	38404587
SPRED3_chr19_38383697_38404587	0/0	t0009	3572	2	2	0	0	0	0	copy fasta	SPRED3	chr19	38383697	38404587
SPRED3_chr19_38383697_38404587	0/0	t0010	3558	2	0	0	0	0	2	copy fasta	SPRED3	chr19	38383697	38404587
SPRED3_chr19_38383697_38404587	0/0	t0011	3558	2	0	0	1	0	1	copy fasta	SPRED3	chr19	38383697	38404587
SPRED3_chr19_38383697_38404587	0/0	t0012	3556	2	0	0	2	0	0	copy fasta	SPRED3	chr19	38383697	38404587
SPRED3_chr19_38383697_38404587	0/0	t0013	3585	1	1	0	0	0	0	copy fasta	SPRED3	chr19	38383697	38404587
SPRED3_chr19_38383697_38404587	0/0	t0014	3559	1	0	0	1	0	0	copy fasta	SPRED3	chr19	38383697	38404587
SPRED3_chr19_38383697_38404587	0/0	t0015	3558	1	0	0	0	0	1	copy fasta	SPRED3	chr19	38383697	38404587
SPRED3_chr19_38383697_38404587	0/0	t0016	3558	1	0	1	0	0	0	copy fasta	SPRED3	chr19	38383697	38404587
SPRED3_chr19_38383697_38404587	0/0	t0017	3558	1	0	0	0	1	0	copy fasta	SPRED3	chr19	38383697	38404587
SPRED3_chr19_38383697_38404587	0/0	t0018	3561	1	0	0	1	0	0	copy fasta	SPRED3	chr19	38383697	38404587
SPRED3_chr19_38383697_38404587	0/0	t0019	3557	1	0	0	1	0	0	copy fasta	SPRED3	chr19	38383697	38404587
SPRED3_chr19_38383697_38404587	0/0	t0020	3558	1	0	0	1	0	0	copy fasta	SPRED3	chr19	38383697	38404587
SPRED3_chr19_38383697_38404587	0/0	t0021	3558	1	1	0	0	0	0	copy fasta	SPRED3	chr19	38383697	38404587
SPRED3_chr19_38383697_38404587	0/0	t0022	3558	1	1	0	0	0	0	copy fasta	SPRED3	chr19	38383697	38404587
SPRED3_chr19_38383697_38404587	0/0	t0023	3571	1	1	0	0	0	0	copy fasta	SPRED3	chr19	38383697	38404587
SPRED3_chr19_38383697_38404587	0/0	t0024	3575	1	0	1	0	0	0	copy fasta	SPRED3	chr19	38383697	38404587
SPRED3_chr19_38383697_38404587	0/0	t0025	3581	1	1	0	0	0	0	copy fasta	SPRED3	chr19	38383697	38404587
SPRED3_chr19_38383697_38404587	0/0	t0026	3580	1	1	0	0	0	0	copy fasta	SPRED3	chr19	38383697	38404587
SPRED3_chr19_38383697_38404587	0/0	t0027	3592	1	1	0	0	0	0	copy fasta	SPRED3	chr19	38383697	38404587
SPRED3_chr19_38383697_38404587	0/0	t0028	3586	1	1	0	0	0	0	copy fasta	SPRED3	chr19	38383697	38404587
SPRING1_chr12_116705171_116743069	1/0	t0001	7809	65	1	20	30	6	7	copy fasta	SPRING1	chr12	116705171	116743069
SPRING1_chr12_116705171_116743069	0/0	t0002	7824	36	1	2	33	0	0	copy fasta	SPRING1	chr12	116705171	116743069
SPRING1_chr12_116705171_116743069	0/1	t0003	7823	30	2	3	19	1	4	copy fasta	SPRING1	chr12	116705171	116743069
SPRING1_chr12_116705171_116743069	0/0	t0004	7813	24	5	1	14	1	3	copy fasta	SPRING1	chr12	116705171	116743069
SPRING1_chr12_116705171_116743069	0/0	t0005	7810	21	0	5	14	0	2	copy fasta	SPRING1	chr12	116705171	116743069
SPRING1_chr12_116705171_116743069	0/0	t0006	7813	17	17	0	0	0	0	copy fasta	SPRING1	chr12	116705171	116743069
SPRING1_chr12_116705171_116743069	0/0	t0007	7806	12	0	0	11	0	1	copy fasta	SPRING1	chr12	116705171	116743069
SPRING1_chr12_116705171_116743069	0/0	t0008	7812	11	5	2	0	2	2	copy fasta	SPRING1	chr12	116705171	116743069
SPRING1_chr12_116705171_116743069	0/0	t0009	7824	8	5	2	1	0	0	copy fasta	SPRING1	chr12	116705171	116743069
SPRING1_chr12_116705171_116743069	0/0	t0010	7814	8	3	0	4	0	1	copy fasta	SPRING1	chr12	116705171	116743069
SPRING1_chr12_116705171_116743069	0/0	t0011	7806	7	7	0	0	0	0	copy fasta	SPRING1	chr12	116705171	116743069
SPRING1_chr12_116705171_116743069	0/0	t0012	7821	7	0	0	7	0	0	copy fasta	SPRING1	chr12	116705171	116743069
SPRING1_chr12_116705171_116743069	0/0	t0013	7809	6	0	0	6	0	0	copy fasta	SPRING1	chr12	116705171	116743069
SPRING1_chr12_116705171_116743069	0/0	t0014	7812	4	3	1	0	0	0	copy fasta	SPRING1	chr12	116705171	116743069
SPRING1_chr12_116705171_116743069	0/0	t0015	7814	4	0	2	0	1	1	copy fasta	SPRING1	chr12	116705171	116743069
SPRING1_chr12_116705171_116743069	0/0	t0016	7825	3	0	0	3	0	0	copy fasta	SPRING1	chr12	116705171	116743069
SPRING1_chr12_116705171_116743069	0/0	t0017	7819	3	0	1	1	0	1	copy fasta	SPRING1	chr12	116705171	116743069
SPRING1_chr12_116705171_116743069	0/0	t0018	7826	3	1	1	0	0	1	copy fasta	SPRING1	chr12	116705171	116743069
SPRING1_chr12_116705171_116743069	0/0	t0019	7815	3	3	0	0	0	0	copy fasta	SPRING1	chr12	116705171	116743069
SPRING1_chr12_116705171_116743069	0/0	t0020	7807	3	0	0	3	0	0	copy fasta	SPRING1	chr12	116705171	116743069
SPRING1_chr12_116705171_116743069	0/0	t0021	7812	3	3	0	0	0	0	copy fasta	SPRING1	chr12	116705171	116743069
SPRING1_chr12_116705171_116743069	0/0	t0022	7817	2	2	0	0	0	0	copy fasta	SPRING1	chr12	116705171	116743069
SPRING1_chr12_116705171_116743069	0/0	t0023	7824	2	0	0	2	0	0	copy fasta	SPRING1	chr12	116705171	116743069
SPRING1_chr12_116705171_116743069	0/0	t0024	7809	2	0	1	0	0	1	copy fasta	SPRING1	chr12	116705171	116743069
SPRING1_chr12_116705171_116743069	0/0	t0025	7813	2	0	0	2	0	0	copy fasta	SPRING1	chr12	116705171	116743069
SPRING1_chr12_116705171_116743069	0/0	t0026	7806	2	2	0	0	0	0	copy fasta	SPRING1	chr12	116705171	116743069