JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SS18L2_chr3_42585860_42601934	0/0	t0013	2464	2	2	0	0	0	0	copy fasta	SS18L2	chr3	42585860	42601934
SS18L2_chr3_42585860_42601934	0/0	t0014	2464	2	0	0	2	0	0	copy fasta	SS18L2	chr3	42585860	42601934
SS18L2_chr3_42585860_42601934	0/0	t0015	2464	1	0	0	0	0	1	copy fasta	SS18L2	chr3	42585860	42601934
SS18L2_chr3_42585860_42601934	0/0	t0016	2464	1	0	0	0	0	1	copy fasta	SS18L2	chr3	42585860	42601934
SS18L2_chr3_42585860_42601934	0/0	t0017	2840	1	0	0	1	0	0	copy fasta	SS18L2	chr3	42585860	42601934
SS18L2_chr3_42585860_42601934	0/0	t0018	2464	1	0	0	1	0	0	copy fasta	SS18L2	chr3	42585860	42601934
SS18L2_chr3_42585860_42601934	0/0	t0019	2464	1	0	0	1	0	0	copy fasta	SS18L2	chr3	42585860	42601934
SS18L2_chr3_42585860_42601934	0/0	t0020	2464	1	1	0	0	0	0	copy fasta	SS18L2	chr3	42585860	42601934
SS18L2_chr3_42585860_42601934	0/0	t0021	2464	1	1	0	0	0	0	copy fasta	SS18L2	chr3	42585860	42601934
SS18L2_chr3_42585860_42601934	0/0	t0022	2464	1	0	0	1	0	0	copy fasta	SS18L2	chr3	42585860	42601934
SS18_chr18_26011253_26095613	0/1	t0001	2146	231	54	42	105	5	24	copy fasta	SS18	chr18	26011253	26095613
SS18_chr18_26011253_26095613	0/0	t0002	2146	24	0	13	0	3	8	copy fasta	SS18	chr18	26011253	26095613
SS18_chr18_26011253_26095613	1/0	t0003	2146	22	10	0	8	2	1	copy fasta	SS18	chr18	26011253	26095613
SS18_chr18_26011253_26095613	0/0	t0004	2147	13	0	0	13	0	0	copy fasta	SS18	chr18	26011253	26095613
SS18_chr18_26011253_26095613	0/0	t0005	2146	9	6	3	0	0	0	copy fasta	SS18	chr18	26011253	26095613
SS18_chr18_26011253_26095613	0/0	t0006	2146	6	5	1	0	0	0	copy fasta	SS18	chr18	26011253	26095613
SS18_chr18_26011253_26095613	0/0	t0007	2146	3	3	0	0	0	0	copy fasta	SS18	chr18	26011253	26095613
SS18_chr18_26011253_26095613	0/0	t0008	2146	2	2	0	0	0	0	copy fasta	SS18	chr18	26011253	26095613
SS18_chr18_26011253_26095613	0/0	t0009	2146	1	1	0	0	0	0	copy fasta	SS18	chr18	26011253	26095613
SS18_chr18_26011253_26095613	0/0	t0010	2146	1	0	1	0	0	0	copy fasta	SS18	chr18	26011253	26095613
SS18_chr18_26011253_26095613	0/0	t0011	2146	1	1	0	0	0	0	copy fasta	SS18	chr18	26011253	26095613
SS18_chr18_26011253_26095613	0/0	t0012	2146	1	0	0	1	0	0	copy fasta	SS18	chr18	26011253	26095613
SS18_chr18_26011253_26095613	0/0	t0013	2146	1	1	0	0	0	0	copy fasta	SS18	chr18	26011253	26095613
SS18_chr18_26011253_26095613	0/0	t0014	2146	1	0	0	0	0	1	copy fasta	SS18	chr18	26011253	26095613
SS18_chr18_26011253_26095613	0/0	t0015	2146	1	0	0	1	0	0	copy fasta	SS18	chr18	26011253	26095613
SS18_chr18_26011253_26095613	0/0	t0016	2146	1	1	0	0	0	0	copy fasta	SS18	chr18	26011253	26095613
SSBP1_chr7_141733358_141755488	1/1	t0001	231	423	88	67	206	16	44	copy fasta	SSBP1	chr7	141733358	141755488
SSBP1_chr7_141733358_141755488	0/0	t0002	231	1	0	1	0	0	0	copy fasta	SSBP1	chr7	141733358	141755488
SSBP2_chr5_81407804_81756097	1/1	t0001	7756	45	2	19	14	2	6	copy fasta	SSBP2	chr5	81407804	81756097
SSBP2_chr5_81407804_81756097	0/0	t0002	7781	12	8	0	2	1	1	copy fasta	SSBP2	chr5	81407804	81756097
SSBP2_chr5_81407804_81756097	0/0	t0003	7779	10	4	2	4	0	0	copy fasta	SSBP2	chr5	81407804	81756097
SSBP2_chr5_81407804_81756097	0/0	t0004	7779	8	7	1	0	0	0	copy fasta	SSBP2	chr5	81407804	81756097
SSBP2_chr5_81407804_81756097	0/0	t0005	7779	6	5	1	0	0	0	copy fasta	SSBP2	chr5	81407804	81756097
SSBP2_chr5_81407804_81756097	0/0	t0006	7757	6	2	1	0	2	1	copy fasta	SSBP2	chr5	81407804	81756097
SSBP2_chr5_81407804_81756097	0/0	t0007	7779	5	4	1	0	0	0	copy fasta	SSBP2	chr5	81407804	81756097
SSBP2_chr5_81407804_81756097	0/0	t0008	7781	5	2	2	0	0	1	copy fasta	SSBP2	chr5	81407804	81756097
SSBP2_chr5_81407804_81756097	0/0	t0009	7785	5	0	2	3	0	0	copy fasta	SSBP2	chr5	81407804	81756097
SSBP2_chr5_81407804_81756097	0/0	t0010	7757	5	0	4	1	0	0	copy fasta	SSBP2	chr5	81407804	81756097
SSBP2_chr5_81407804_81756097	0/0	t0011	7784	4	2	2	0	0	0	copy fasta	SSBP2	chr5	81407804	81756097
SSBP2_chr5_81407804_81756097	0/0	t0012	7786	4	0	0	4	0	0	copy fasta	SSBP2	chr5	81407804	81756097
SSBP2_chr5_81407804_81756097	0/0	t0013	7780	3	3	0	0	0	0	copy fasta	SSBP2	chr5	81407804	81756097
SSBP2_chr5_81407804_81756097	0/0	t0014	7779	3	3	0	0	0	0	copy fasta	SSBP2	chr5	81407804	81756097
SSBP2_chr5_81407804_81756097	0/0	t0015	7779	3	0	1	0	0	2	copy fasta	SSBP2	chr5	81407804	81756097
SSBP2_chr5_81407804_81756097	0/0	t0016	7776	3	2	0	0	1	0	copy fasta	SSBP2	chr5	81407804	81756097
SSBP2_chr5_81407804_81756097	0/0	t0017	7777	2	2	0	0	0	0	copy fasta	SSBP2	chr5	81407804	81756097
SSBP2_chr5_81407804_81756097	0/0	t0018	7779	2	2	0	0	0	0	copy fasta	SSBP2	chr5	81407804	81756097
SSBP2_chr5_81407804_81756097	0/0	t0019	7782	2	0	1	0	0	1	copy fasta	SSBP2	chr5	81407804	81756097
SSBP2_chr5_81407804_81756097	0/0	t0020	7756	2	0	0	2	0	0	copy fasta	SSBP2	chr5	81407804	81756097
SSBP2_chr5_81407804_81756097	0/0	t0021	7756	2	0	0	2	0	0	copy fasta	SSBP2	chr5	81407804	81756097
SSBP2_chr5_81407804_81756097	0/0	t0022	7755	2	0	0	2	0	0	copy fasta	SSBP2	chr5	81407804	81756097