JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SSUH2_chr3_8614386_8649798	0/0	t0002	523	24	22	1	0	0	1	copy fasta	SSUH2	chr3	8614386	8649798
SSUH2_chr3_8614386_8649798	0/0	t0003	523	5	5	0	0	0	0	copy fasta	SSUH2	chr3	8614386	8649798
SSUH2_chr3_8614386_8649798	0/0	t0004	523	2	2	0	0	0	0	copy fasta	SSUH2	chr3	8614386	8649798
SSUH2_chr3_8614386_8649798	0/0	t0005	523	2	0	2	0	0	0	copy fasta	SSUH2	chr3	8614386	8649798
SSUH2_chr3_8614386_8649798	0/0	t0006	523	1	1	0	0	0	0	copy fasta	SSUH2	chr3	8614386	8649798
SSX1_chrX_48250392_48272444	1/1	t0001	657	149	40	25	62	7	13	copy fasta	SSX1	chrX	48250392	48272444
SSX1_chrX_48250392_48272444	0/0	t0002	672	91	5	18	52	6	10	copy fasta	SSX1	chrX	48250392	48272444
SSX1_chrX_48250392_48272444	0/0	t0003	657	63	7	12	34	0	10	copy fasta	SSX1	chrX	48250392	48272444
SSX1_chrX_48250392_48272444	0/0	t0004	655	12	12	0	0	0	0	copy fasta	SSX1	chrX	48250392	48272444
SSX1_chrX_48250392_48272444	0/0	t0005	672	10	7	0	3	0	0	copy fasta	SSX1	chrX	48250392	48272444
SSX1_chrX_48250392_48272444	0/0	t0006	657	3	0	0	3	0	0	copy fasta	SSX1	chrX	48250392	48272444
SSX1_chrX_48250392_48272444	0/0	t0007	655	2	2	0	0	0	0	copy fasta	SSX1	chrX	48250392	48272444
SSX1_chrX_48250392_48272444	0/0	t0008	656	2	2	0	0	0	0	copy fasta	SSX1	chrX	48250392	48272444
SSX1_chrX_48250392_48272444	0/0	t0009	672	1	0	0	1	0	0	copy fasta	SSX1	chrX	48250392	48272444
SSX1_chrX_48250392_48272444	0/0	t0010	672	1	1	0	0	0	0	copy fasta	SSX1	chrX	48250392	48272444
SSX1_chrX_48250392_48272444	0/0	t0011	675	1	0	0	1	0	0	copy fasta	SSX1	chrX	48250392	48272444
SSX1_chrX_48250392_48272444	0/0	t0012	674	1	0	0	1	0	0	copy fasta	SSX1	chrX	48250392	48272444
SSX1_chrX_48250392_48272444	0/0	t0013	672	1	0	1	0	0	0	copy fasta	SSX1	chrX	48250392	48272444
SSX1_chrX_48250392_48272444	0/0	t0014	659	1	0	0	0	0	1	copy fasta	SSX1	chrX	48250392	48272444
SSX1_chrX_48250392_48272444	0/0	t0015	657	1	0	0	1	0	0	copy fasta	SSX1	chrX	48250392	48272444
SSX2B_chrX_52746252_52766536	0/0	t0001	719	17	7	2	3	0	5	copy fasta	SSX2B	chrX	52746252	52766536
SSX2B_chrX_52746252_52766536	0/0	t0002	715	12	1	7	3	1	0	copy fasta	SSX2B	chrX	52746252	52766536
SSX2B_chrX_52746252_52766536	0/0	t0003	717	7	2	2	3	0	0	copy fasta	SSX2B	chrX	52746252	52766536
SSX2B_chrX_52746252_52766536	0/0	t0004	713	6	0	3	2	0	1	copy fasta	SSX2B	chrX	52746252	52766536
SSX2B_chrX_52746252_52766536	0/0	t0005	723	3	1	2	0	0	0	copy fasta	SSX2B	chrX	52746252	52766536
SSX2B_chrX_52746252_52766536	0/0	t0006	721	3	1	0	2	0	0	copy fasta	SSX2B	chrX	52746252	52766536
SSX2B_chrX_52746252_52766536	0/0	t0007	711	2	0	2	0	0	0	copy fasta	SSX2B	chrX	52746252	52766536
SSX2B_chrX_52746252_52766536	0/0	t0008	714	1	0	0	1	0	0	copy fasta	SSX2B	chrX	52746252	52766536
SSX2B_chrX_52746252_52766536	0/0	t0009	716	1	0	0	0	0	1	copy fasta	SSX2B	chrX	52746252	52766536
SSX2B_chrX_52746252_52766536	0/0	t0010	712	1	1	0	0	0	0	copy fasta	SSX2B	chrX	52746252	52766536
SSX2B_chrX_52746252_52766536	0/0	t0011	714	1	0	1	0	0	0	copy fasta	SSX2B	chrX	52746252	52766536
SSX2B_chrX_52746252_52766536	0/0	t0012	715	1	1	0	0	0	0	copy fasta	SSX2B	chrX	52746252	52766536
SSX2IP_chr1_84638706_84695461	0/0	t0001	3908	129	21	26	67	3	12	copy fasta	SSX2IP	chr1	84638706	84695461
SSX2IP_chr1_84638706_84695461	1/0	t0002	3908	62	17	6	33	0	5	copy fasta	SSX2IP	chr1	84638706	84695461
SSX2IP_chr1_84638706_84695461	0/0	t0003	3908	52	10	18	15	2	7	copy fasta	SSX2IP	chr1	84638706	84695461
SSX2IP_chr1_84638706_84695461	0/0	t0004	3908	18	13	5	0	0	0	copy fasta	SSX2IP	chr1	84638706	84695461
SSX2IP_chr1_84638706_84695461	0/0	t0005	3904	11	3	3	1	2	2	copy fasta	SSX2IP	chr1	84638706	84695461
SSX2IP_chr1_84638706_84695461	0/0	t0006	3908	10	10	0	0	0	0	copy fasta	SSX2IP	chr1	84638706	84695461
SSX2IP_chr1_84638706_84695461	0/0	t0007	3904	4	0	0	0	2	2	copy fasta	SSX2IP	chr1	84638706	84695461
SSX2IP_chr1_84638706_84695461	0/0	t0008	3908	4	4	0	0	0	0	copy fasta	SSX2IP	chr1	84638706	84695461
SSX2IP_chr1_84638706_84695461	0/0	t0009	3908	4	0	0	4	0	0	copy fasta	SSX2IP	chr1	84638706	84695461
SSX2IP_chr1_84638706_84695461	0/0	t0010	3904	4	3	1	0	0	0	copy fasta	SSX2IP	chr1	84638706	84695461
SSX2IP_chr1_84638706_84695461	0/0	t0011	3908	2	0	0	0	0	2	copy fasta	SSX2IP	chr1	84638706	84695461
SSX2IP_chr1_84638706_84695461	0/0	t0012	3908	2	0	0	2	0	0	copy fasta	SSX2IP	chr1	84638706	84695461
SSX2IP_chr1_84638706_84695461	0/0	t0013	3908	2	0	2	0	0	0	copy fasta	SSX2IP	chr1	84638706	84695461
SSX2IP_chr1_84638706_84695461	0/0	t0014	3908	2	2	0	0	0	0	copy fasta	SSX2IP	chr1	84638706	84695461
SSX2IP_chr1_84638706_84695461	0/0	t0015	3908	2	1	1	0	0	0	copy fasta	SSX2IP	chr1	84638706	84695461
SSX2IP_chr1_84638706_84695461	0/0	t0016	3908	2	0	0	2	0	0	copy fasta	SSX2IP	chr1	84638706	84695461
SSX2IP_chr1_84638706_84695461	0/0	t0017	3908	1	0	0	0	1	0	copy fasta	SSX2IP	chr1	84638706	84695461
SSX2IP_chr1_84638706_84695461	0/0	t0018	3908	1	1	0	0	0	0	copy fasta	SSX2IP	chr1	84638706	84695461