Item | Value |
---|---|
geneid | 727837 |
ensemblid | ENSG00000268447.6 |
hgncid | 22263 |
symbol | SSX2B |
name | SSX family member 2B |
refseq_nuc | NM_001164417.3 |
refseq_prot | NP_001157889.1 |
ensembl_nuc | ENST00000596480.6 |
ensembl_prot | ENSP00000470740.2 |
mane_status | MANE Select |
chr | chrX |
start | 52751252 |
end | 52761536 |
strand | + |
ver | v1.2 |
region | chrX:52751252-52761536 |
region5000 | chrX:52746252-52766536 |
regionname0 | SSX2B_chrX_52751252_52761536 |
regionname5000 | SSX2B_chrX_52746252_52766536 |
ahapid | grch38/chm13v2 | alen | total | AFR | AMR | EAS | EUR | SAS | JPT | regionname | genename | aa | chr | start | end |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
a0001 | 0/0 | 188 | 54 | 13 | 19 | 14 | 1 | 7 | 7 | SSX2B_chrX_52746252_52766536 | SSX2B | MNGDD others(183): Show |
chrX | 52746252 | 52766536 |
a0002 | 0/0 | 188 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | SSX2B_chrX_52746252_52766536 | SSX2B | MNGDD others(183): Show |
chrX | 52746252 | 52766536 |
achapid | grch38/chm13v2 | alen | clen | total | AFR | AMR | EAS | EUR | SAS | regionname | genename | aseq | cseq | chr | start | end |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
a0001c0001 | 0/0 | 564 | 47 | 10 | 18 | 11 | 1 | 7 | SSX2B_chrX_52746252_52766536 | SSX2B | ATGAA others(559): Show |
chrX | 52746252 | 52766536 | ||
a0001c0002 | 0/0 | 564 | 7 | 3 | 1 | 3 | 0 | 0 | SSX2B_chrX_52746252_52766536 | SSX2B | ATGAA others(559): Show |
chrX | 52746252 | 52766536 | ||
a0002c0003 | 0/0 | 564 | 1 | 1 | 0 | 0 | 0 | 0 | SSX2B_chrX_52746252_52766536 | SSX2B | ATGAA others(559): Show |
chrX | 52746252 | 52766536 |
acthapid | grch38chm13v2 | tlen | total | AFR | AMR | EAS | EUR | SAS | regionname | genename | tseq | chr | start | end |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
a0001c0001t0001 | 0/0 | 1285 | 15 | 6 | 2 | 2 | 0 | 5 | SSX2B_chrX_52746252_52766536 | SSX2B | CTTTC others(1280): Show |
chrX | 52746252 | 52766536 |
a0001c0001t0002 | 0/0 | 1281 | 13 | 1 | 8 | 2 | 1 | 1 | SSX2B_chrX_52746252_52766536 | SSX2B | CTTTC others(1276): Show |
chrX | 52746252 | 52766536 |
a0001c0001t0003 | 0/0 | 1283 | 6 | 1 | 2 | 3 | 0 | 0 | SSX2B_chrX_52746252_52766536 | SSX2B | CTTTC others(1278): Show |
chrX | 52746252 | 52766536 |
a0001c0001t0004 | 0/0 | 1279 | 7 | 0 | 3 | 3 | 0 | 1 | SSX2B_chrX_52746252_52766536 | SSX2B | CTTTC others(1274): Show |
chrX | 52746252 | 52766536 |
a0001c0001t0005 | 0/0 | 1289 | 2 | 1 | 1 | 0 | 0 | 0 | SSX2B_chrX_52746252_52766536 | SSX2B | CTTTC others(1284): Show |
chrX | 52746252 | 52766536 |
a0001c0001t0006 | 0/0 | 1287 | 2 | 1 | 0 | 1 | 0 | 0 | SSX2B_chrX_52746252_52766536 | SSX2B | CTTTC others(1282): Show |
chrX | 52746252 | 52766536 |
a0001c0001t0007 | 0/0 | 1277 | 2 | 0 | 2 | 0 | 0 | 0 | SSX2B_chrX_52746252_52766536 | SSX2B | CTTTC others(1272): Show |
chrX | 52746252 | 52766536 |
a0001c0002t0001 | 0/0 | 1285 | 1 | 0 | 0 | 1 | 0 | 0 | SSX2B_chrX_52746252_52766536 | SSX2B | CTTTC others(1280): Show |
chrX | 52746252 | 52766536 |
a0001c0002t0002 | 0/0 | 1281 | 2 | 1 | 0 | 1 | 0 | 0 | SSX2B_chrX_52746252_52766536 | SSX2B | CTTTC others(1276): Show |
chrX | 52746252 | 52766536 |
a0001c0002t0003 | 0/0 | 1283 | 1 | 1 | 0 | 0 | 0 | 0 | SSX2B_chrX_52746252_52766536 | SSX2B | CTTTC others(1278): Show |
chrX | 52746252 | 52766536 |
a0001c0002t0005 | 0/0 | 1289 | 1 | 0 | 1 | 0 | 0 | 0 | SSX2B_chrX_52746252_52766536 | SSX2B | CTTTC others(1284): Show |
chrX | 52746252 | 52766536 |
a0001c0002t0006 | 0/0 | 1287 | 1 | 0 | 0 | 1 | 0 | 0 | SSX2B_chrX_52746252_52766536 | SSX2B | CTTTC others(1282): Show |
chrX | 52746252 | 52766536 |
a0001c0002t0008 | 0/0 | 1281 | 1 | 1 | 0 | 0 | 0 | 0 | SSX2B_chrX_52746252_52766536 | SSX2B | CTTTC others(1276): Show |
chrX | 52746252 | 52766536 |
a0002c0003t0001 | 0/0 | 1285 | 1 | 1 | 0 | 0 | 0 | 0 | SSX2B_chrX_52746252_52766536 | SSX2B | CTTTC others(1280): Show |
chrX | 52746252 | 52766536 |
actghapid | grch38/chm13v2 | total | AFR | AMR | EAS | EUR | SAS | regionname | genename | chr | start | end |
---|---|---|---|---|---|---|---|---|---|---|---|---|
a0001c0001t0001g0001 | 0/0 | 1 | 0 | 0 | 1 | 0 | 0 | SSX2B_chrX_52746252_52766536 | SSX2B | chrX | 52746252 | 52766536 |
a0001c0001t0001g0002 | 0/0 | 3 | 0 | 2 | 0 | 0 | 1 | SSX2B_chrX_52746252_52766536 | SSX2B | chrX | 52746252 | 52766536 |
a0001c0001t0001g0004 | 0/0 | 1 | 1 | 0 | 0 | 0 | 0 | SSX2B_chrX_52746252_52766536 | SSX2B | chrX | 52746252 | 52766536 |
a0001c0001t0001g0005 | 0/0 | 1 | 1 | 0 | 0 | 0 | 0 | SSX2B_chrX_52746252_52766536 | SSX2B | chrX | 52746252 | 52766536 |
a0001c0001t0001g0009 | 0/0 | 1 | 0 | 0 | 0 | 0 | 1 | SSX2B_chrX_52746252_52766536 | SSX2B | chrX | 52746252 | 52766536 |
a0001c0001t0001g0010 | 0/0 | 1 | 1 | 0 | 0 | 0 | 0 | SSX2B_chrX_52746252_52766536 | SSX2B | chrX | 52746252 | 52766536 |
a0001c0001t0001g0011 | 0/0 | 1 | 0 | 0 | 0 | 0 | 1 | SSX2B_chrX_52746252_52766536 | SSX2B | chrX | 52746252 | 52766536 |
a0001c0001t0001g0012 | 0/0 | 1 | 1 | 0 | 0 | 0 | 0 | SSX2B_chrX_52746252_52766536 | SSX2B | chrX | 52746252 | 52766536 |
a0001c0001t0001g0021 | 0/0 | 1 | 0 | 0 | 0 | 0 | 1 | SSX2B_chrX_52746252_52766536 | SSX2B | chrX | 52746252 | 52766536 |
a0001c0001t0001g0024 | 0/0 | 1 | 1 | 0 | 0 | 0 | 0 | SSX2B_chrX_52746252_52766536 | SSX2B | chrX | 52746252 | 52766536 |
a0001c0001t0001g0026 | 0/0 | 1 | 0 | 0 | 1 | 0 | 0 | SSX2B_chrX_52746252_52766536 | SSX2B | chrX | 52746252 | 52766536 |
a0001c0001t0001g0030 | 0/0 | 1 | 0 | 0 | 0 | 0 | 1 | SSX2B_chrX_52746252_52766536 | SSX2B | chrX | 52746252 | 52766536 |
a0001c0001t0001g0033 | 0/0 | 1 | 1 | 0 | 0 | 0 | 0 | SSX2B_chrX_52746252_52766536 | SSX2B | chrX | 52746252 | 52766536 |
a0001c0001t0002g0001 | 0/0 | 3 | 0 | 2 | 0 | 1 | 0 | SSX2B_chrX_52746252_52766536 | SSX2B | chrX | 52746252 | 52766536 |
a0001c0001t0002g0003 | 0/0 | 3 | 0 | 3 | 0 | 0 | 0 | SSX2B_chrX_52746252_52766536 | SSX2B | chrX | 52746252 | 52766536 |
a0001c0001t0002g0008 | 0/0 | 2 | 0 | 2 | 0 | 0 | 0 | SSX2B_chrX_52746252_52766536 | SSX2B | chrX | 52746252 | 52766536 |
a0001c0001t0002g0016 | 0/0 | 1 | 0 | 0 | 1 | 0 | 0 | SSX2B_chrX_52746252_52766536 | SSX2B | chrX | 52746252 | 52766536 |
a0001c0001t0002g0017 | 0/0 | 1 | 0 | 0 | 1 | 0 | 0 | SSX2B_chrX_52746252_52766536 | SSX2B | chrX | 52746252 | 52766536 |
a0001c0001t0002g0018 | 0/0 | 1 | 0 | 0 | 0 | 0 | 1 | SSX2B_chrX_52746252_52766536 | SSX2B | chrX | 52746252 | 52766536 |
a0001c0001t0002g0028 | 0/0 | 1 | 0 | 1 | 0 | 0 | 0 | SSX2B_chrX_52746252_52766536 | SSX2B | chrX | 52746252 | 52766536 |
a0001c0001t0002g0029 | 0/0 | 1 | 1 | 0 | 0 | 0 | 0 | SSX2B_chrX_52746252_52766536 | SSX2B | chrX | 52746252 | 52766536 |
a0001c0001t0003g0001 | 0/0 | 1 | 0 | 0 | 1 | 0 | 0 | SSX2B_chrX_52746252_52766536 | SSX2B | chrX | 52746252 | 52766536 |
a0001c0001t0003g0004 | 0/0 | 1 | 0 | 1 | 0 | 0 | 0 | SSX2B_chrX_52746252_52766536 | SSX2B | chrX | 52746252 | 52766536 |
a0001c0001t0003g0005 | 0/0 | 1 | 1 | 0 | 0 | 0 | 0 | SSX2B_chrX_52746252_52766536 | SSX2B | chrX | 52746252 | 52766536 |
a0001c0001t0003g0015 | 0/0 | 1 | 0 | 0 | 1 | 0 | 0 | SSX2B_chrX_52746252_52766536 | SSX2B | chrX | 52746252 | 52766536 |
a0001c0001t0003g0020 | 0/0 | 1 | 0 | 1 | 0 | 0 | 0 | SSX2B_chrX_52746252_52766536 | SSX2B | chrX | 52746252 | 52766536 |
a0001c0001t0003g0023 | 0/0 | 1 | 0 | 0 | 1 | 0 | 0 | SSX2B_chrX_52746252_52766536 | SSX2B | chrX | 52746252 | 52766536 |
a0001c0001t0004g0001 | 0/0 | 4 | 0 | 2 | 2 | 0 | 0 | SSX2B_chrX_52746252_52766536 | SSX2B | chrX | 52746252 | 52766536 |
a0001c0001t0004g0002 | 0/0 | 1 | 0 | 0 | 0 | 0 | 1 | SSX2B_chrX_52746252_52766536 | SSX2B | chrX | 52746252 | 52766536 |
a0001c0001t0004g0025 | 0/0 | 1 | 0 | 1 | 0 | 0 | 0 | SSX2B_chrX_52746252_52766536 | SSX2B | chrX | 52746252 | 52766536 |
a0001c0001t0004g0034 | 0/0 | 1 | 0 | 0 | 1 | 0 | 0 | SSX2B_chrX_52746252_52766536 | SSX2B | chrX | 52746252 | 52766536 |
a0001c0001t0005g0019 | 0/0 | 1 | 1 | 0 | 0 | 0 | 0 | SSX2B_chrX_52746252_52766536 | SSX2B | chrX | 52746252 | 52766536 |
a0001c0001t0005g0031 | 0/0 | 1 | 0 | 1 | 0 | 0 | 0 | SSX2B_chrX_52746252_52766536 | SSX2B | chrX | 52746252 | 52766536 |
a0001c0001t0006g0002 | 0/0 | 1 | 0 | 0 | 1 | 0 | 0 | SSX2B_chrX_52746252_52766536 | SSX2B | chrX | 52746252 | 52766536 |
a0001c0001t0006g0022 | 0/0 | 1 | 1 | 0 | 0 | 0 | 0 | SSX2B_chrX_52746252_52766536 | SSX2B | chrX | 52746252 | 52766536 |
a0001c0001t0007g0001 | 0/0 | 2 | 0 | 2 | 0 | 0 | 0 | SSX2B_chrX_52746252_52766536 | SSX2B | chrX | 52746252 | 52766536 |
a0001c0002t0001g0006 | 0/0 | 1 | 0 | 0 | 1 | 0 | 0 | SSX2B_chrX_52746252_52766536 | SSX2B | chrX | 52746252 | 52766536 |
a0001c0002t0002g0007 | 0/0 | 1 | 0 | 0 | 1 | 0 | 0 | SSX2B_chrX_52746252_52766536 | SSX2B | chrX | 52746252 | 52766536 |
a0001c0002t0002g0032 | 0/0 | 1 | 1 | 0 | 0 | 0 | 0 | SSX2B_chrX_52746252_52766536 | SSX2B | chrX | 52746252 | 52766536 |
a0001c0002t0003g0007 | 0/0 | 1 | 1 | 0 | 0 | 0 | 0 | SSX2B_chrX_52746252_52766536 | SSX2B | chrX | 52746252 | 52766536 |
a0001c0002t0005g0027 | 0/0 | 1 | 0 | 1 | 0 | 0 | 0 | SSX2B_chrX_52746252_52766536 | SSX2B | chrX | 52746252 | 52766536 |
a0001c0002t0006g0006 | 0/0 | 1 | 0 | 0 | 1 | 0 | 0 | SSX2B_chrX_52746252_52766536 | SSX2B | chrX | 52746252 | 52766536 |
a0001c0002t0008g0014 | 0/0 | 1 | 1 | 0 | 0 | 0 | 0 | SSX2B_chrX_52746252_52766536 | SSX2B | chrX | 52746252 | 52766536 |
a0002c0003t0001g0013 | 0/0 | 1 | 1 | 0 | 0 | 0 | 0 | SSX2B_chrX_52746252_52766536 | SSX2B | chrX | 52746252 | 52766536 |
sampleid | ID haplotypeid
|
ahapid | chapid | thapid | ghapid | gpopname | popname | regionname | genename | chr | start | end |
---|---|---|---|---|---|---|---|---|---|---|---|---|
HG00280 | hp1 | a0001 | c0001 | t0002 | g0001 | EUR | FIN | SSX2B_chrX_52746252_52766536 | SSX2B | chrX | 52746252 | 52766536 |
HG00609 | hp1 | a0001 | c0001 | t0002 | g0016 | EAS | CHS | SSX2B_chrX_52746252_52766536 | SSX2B | chrX | 52746252 | 52766536 |
HG00621 | hp1 | a0001 | c0001 | t0001 | g0001 | EAS | CHS | SSX2B_chrX_52746252_52766536 | SSX2B | chrX | 52746252 | 52766536 |
HG00639 | hp1 | a0001 | c0001 | t0004 | g0001 | AMR | PUR | SSX2B_chrX_52746252_52766536 | SSX2B | chrX | 52746252 | 52766536 |
HG00639 | hp2 | a0001 | c0001 | t0003 | g0020 | AMR | PUR | SSX2B_chrX_52746252_52766536 | SSX2B | chrX | 52746252 | 52766536 |
HG00673 | hp1 | a0001 | c0001 | t0004 | g0001 | EAS | CHS | SSX2B_chrX_52746252_52766536 | SSX2B | chrX | 52746252 | 52766536 |
HG00738 | hp1 | a0001 | c0001 | t0005 | g0031 | AMR | PUR | SSX2B_chrX_52746252_52766536 | SSX2B | chrX | 52746252 | 52766536 |
HG01106 | hp1 | a0001 | c0001 | t0004 | g0001 | AMR | PUR | SSX2B_chrX_52746252_52766536 | SSX2B | chrX | 52746252 | 52766536 |
HG01175 | hp1 | a0001 | c0001 | t0007 | g0001 | AMR | PUR | SSX2B_chrX_52746252_52766536 | SSX2B | chrX | 52746252 | 52766536 |
HG01175 | hp2 | a0001 | c0001 | t0002 | g0003 | AMR | PUR | SSX2B_chrX_52746252_52766536 | SSX2B | chrX | 52746252 | 52766536 |
HG01243 | hp1 | a0001 | c0001 | t0003 | g0004 | AMR | PUR | SSX2B_chrX_52746252_52766536 | SSX2B | chrX | 52746252 | 52766536 |
HG01255 | hp1 | a0001 | c0002 | t0005 | g0027 | AMR | CLM | SSX2B_chrX_52746252_52766536 | SSX2B | chrX | 52746252 | 52766536 |
HG01358 | hp1 | a0001 | c0001 | t0002 | g0001 | AMR | CLM | SSX2B_chrX_52746252_52766536 | SSX2B | chrX | 52746252 | 52766536 |
HG01433 | hp1 | a0001 | c0001 | t0002 | g0003 | AMR | CLM | SSX2B_chrX_52746252_52766536 | SSX2B | chrX | 52746252 | 52766536 |
HG01496 | hp1 | a0001 | c0001 | t0004 | g0025 | AMR | CLM | SSX2B_chrX_52746252_52766536 | SSX2B | chrX | 52746252 | 52766536 |
HG01496 | hp2 | a0001 | c0001 | t0007 | g0001 | AMR | CLM | SSX2B_chrX_52746252_52766536 | SSX2B | chrX | 52746252 | 52766536 |
HG01928 | hp1 | a0001 | c0001 | t0002 | g0001 | AMR | PEL | SSX2B_chrX_52746252_52766536 | SSX2B | chrX | 52746252 | 52766536 |
HG01978 | hp1 | a0001 | c0001 | t0002 | g0003 | AMR | PEL | SSX2B_chrX_52746252_52766536 | SSX2B | chrX | 52746252 | 52766536 |
HG01978 | hp2 | a0001 | c0001 | t0002 | g0008 | AMR | PEL | SSX2B_chrX_52746252_52766536 | SSX2B | chrX | 52746252 | 52766536 |
HG02083 | hp1 | a0001 | c0001 | t0006 | g0002 | EAS | KHV | SSX2B_chrX_52746252_52766536 | SSX2B | chrX | 52746252 | 52766536 |
HG02132 | hp1 | a0001 | c0001 | t0003 | g0015 | EAS | KHV | SSX2B_chrX_52746252_52766536 | SSX2B | chrX | 52746252 | 52766536 |
HG02148 | hp1 | a0001 | c0001 | t0001 | g0002 | AMR | PEL | SSX2B_chrX_52746252_52766536 | SSX2B | chrX | 52746252 | 52766536 |
HG02148 | hp2 | a0001 | c0001 | t0002 | g0028 | AMR | PEL | SSX2B_chrX_52746252_52766536 | SSX2B | chrX | 52746252 | 52766536 |
HG02273 | hp1 | a0001 | c0001 | t0002 | g0008 | AMR | PEL | SSX2B_chrX_52746252_52766536 | SSX2B | chrX | 52746252 | 52766536 |
HG02273 | hp2 | a0001 | c0001 | t0001 | g0002 | AMR | PEL | SSX2B_chrX_52746252_52766536 | SSX2B | chrX | 52746252 | 52766536 |
HG02622 | hp1 | a0001 | c0002 | t0008 | g0014 | AFR | GWD | SSX2B_chrX_52746252_52766536 | SSX2B | chrX | 52746252 | 52766536 |
HG02622 | hp2 | a0001 | c0001 | t0005 | g0019 | AFR | GWD | SSX2B_chrX_52746252_52766536 | SSX2B | chrX | 52746252 | 52766536 |
HG02735 | hp1 | a0001 | c0001 | t0001 | g0011 | SAS | PJL | SSX2B_chrX_52746252_52766536 | SSX2B | chrX | 52746252 | 52766536 |
HG02895 | hp1 | a0001 | c0001 | t0001 | g0012 | AFR | GWD | SSX2B_chrX_52746252_52766536 | SSX2B | chrX | 52746252 | 52766536 |
HG02922 | hp1 | a0001 | c0001 | t0006 | g0022 | AFR | ESN | SSX2B_chrX_52746252_52766536 | SSX2B | chrX | 52746252 | 52766536 |
HG02922 | hp2 | a0001 | c0002 | t0003 | g0007 | AFR | ESN | SSX2B_chrX_52746252_52766536 | SSX2B | chrX | 52746252 | 52766536 |
HG02965 | hp1 | a0001 | c0001 | t0001 | g0033 | AFR | ESN | SSX2B_chrX_52746252_52766536 | SSX2B | chrX | 52746252 | 52766536 |
HG03225 | hp1 | a0001 | c0001 | t0001 | g0004 | AFR | MSL | SSX2B_chrX_52746252_52766536 | SSX2B | chrX | 52746252 | 52766536 |
HG03486 | hp1 | a0001 | c0001 | t0001 | g0005 | AFR | MSL | SSX2B_chrX_52746252_52766536 | SSX2B | chrX | 52746252 | 52766536 |
HG03486 | hp2 | a0001 | c0001 | t0001 | g0024 | AFR | MSL | SSX2B_chrX_52746252_52766536 | SSX2B | chrX | 52746252 | 52766536 |
HG03540 | hp1 | a0001 | c0001 | t0003 | g0005 | AFR | GWD | SSX2B_chrX_52746252_52766536 | SSX2B | chrX | 52746252 | 52766536 |
HG03540 | hp2 | a0002 | c0003 | t0001 | g0013 | AFR | GWD | SSX2B_chrX_52746252_52766536 | SSX2B | chrX | 52746252 | 52766536 |
HG03654 | hp1 | a0001 | c0001 | t0001 | g0021 | SAS | PJL | SSX2B_chrX_52746252_52766536 | SSX2B | chrX | 52746252 | 52766536 |
HG03831 | hp1 | a0001 | c0001 | t0001 | g0009 | SAS | BEB | SSX2B_chrX_52746252_52766536 | SSX2B | chrX | 52746252 | 52766536 |
HG03831 | hp2 | a0001 | c0001 | t0002 | g0018 | SAS | BEB | SSX2B_chrX_52746252_52766536 | SSX2B | chrX | 52746252 | 52766536 |
HG04115 | hp1 | a0001 | c0001 | t0001 | g0002 | SAS | STU | SSX2B_chrX_52746252_52766536 | SSX2B | chrX | 52746252 | 52766536 |
HG04199 | hp1 | a0001 | c0001 | t0001 | g0030 | SAS | STU | SSX2B_chrX_52746252_52766536 | SSX2B | chrX | 52746252 | 52766536 |
HG04204 | hp1 | a0001 | c0001 | t0004 | g0002 | SAS | STU | SSX2B_chrX_52746252_52766536 | SSX2B | chrX | 52746252 | 52766536 |
NA18612 | hp1 | a0001 | c0002 | t0001 | g0006 | EAS | CHB | SSX2B_chrX_52746252_52766536 | SSX2B | chrX | 52746252 | 52766536 |
NA18747 | hp1 | a0001 | c0001 | t0004 | g0001 | EAS | CHB | SSX2B_chrX_52746252_52766536 | SSX2B | chrX | 52746252 | 52766536 |
NA18944 | hp1 | a0001 | c0002 | t0006 | g0006 | EAS | JPT | SSX2B_chrX_52746252_52766536 | SSX2B | chrX | 52746252 | 52766536 |
NA18953 | hp1 | a0001 | c0001 | t0004 | g0034 | EAS | JPT | SSX2B_chrX_52746252_52766536 | SSX2B | chrX | 52746252 | 52766536 |
NA18983 | hp1 | a0001 | c0001 | t0003 | g0001 | EAS | JPT | SSX2B_chrX_52746252_52766536 | SSX2B | chrX | 52746252 | 52766536 |
NA19043 | hp1 | a0001 | c0001 | t0002 | g0029 | AFR | LWK | SSX2B_chrX_52746252_52766536 | SSX2B | chrX | 52746252 | 52766536 |
NA19060 | hp1 | a0001 | c0001 | t0003 | g0023 | EAS | JPT | SSX2B_chrX_52746252_52766536 | SSX2B | chrX | 52746252 | 52766536 |
NA19063 | hp1 | a0001 | c0001 | t0001 | g0026 | EAS | JPT | SSX2B_chrX_52746252_52766536 | SSX2B | chrX | 52746252 | 52766536 |
NA19066 | hp1 | a0001 | c0002 | t0002 | g0007 | EAS | JPT | SSX2B_chrX_52746252_52766536 | SSX2B | chrX | 52746252 | 52766536 |
NA19076 | hp1 | a0001 | c0001 | t0002 | g0017 | EAS | JPT | SSX2B_chrX_52746252_52766536 | SSX2B | chrX | 52746252 | 52766536 |
HG02559 | hp1 | a0001 | c0002 | t0002 | g0032 | AFR | ACB | SSX2B_chrX_52746252_52766536 | SSX2B | chrX | 52746252 | 52766536 |
HG02559 | hp2 | a0001 | c0001 | t0001 | g0010 | AFR | ACB | SSX2B_chrX_52746252_52766536 | SSX2B | chrX | 52746252 | 52766536 |
view | chr:pos | ref | alt | # # of ahapid:amino-acid(protein) level |
ahapids | # # of haplotypeids |
haplotypeids | annotation | impact | hgvs_c | hgvs_p | genename | geneid | featuretype | featureid | transcript_biotype | rank | cdna cdna pos length |
cds cds pos length |
aa aa pos length |
distance | status | chr | pos |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chrX:52752740 | G | C | 1 | a0002 | 1 | HG03540.hp2 | missense_variant | MODERATE | c.60G>C | p.Lys20Asn | SSX2B | ENSG00000268447.6 | transcript | ENST00000596480.6 | protein_coding | 2/8 | 147/1281 | 60/567 | 20/188 | chrX | 52752740 |
view | chr:pos | ref | alt | # # of chapid |
chapids | # # of haplotypeids |
haplotypeids | annotation | impact | hgvs_c | hgvs_p | genename | geneid | featuretype | featureid | transcript_biotype | rank | cdna cdna pos length |
cds cds pos length |
aa aa pos length |
distance | status | chr | pos |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chrX:52753247 | G | A | 2 | a0001c0002 a0002c0003 |
8 | HG01255.hp1 HG02559.hp1 HG02622.hp1 others(5): Show |
synonymous_variant | LOW | c.129G>A | p.Ser43Ser | SSX2B | ENSG00000268447.6 | transcript | ENST00000596480.6 | protein_coding | 3/8 | 216/1281 | 129/567 | 43/188 | chrX | 52753247 |
view | chr:pos | ref | alt | # # of thapid:transcript level |
thapids | # # of haplotypeids |
haplotypeids | annotation | impact | hgvs_c | hgvs_p | genename | geneid | featuretype | featureid | transcript_biotype | rank | cdna cdna pos length |
cds cds pos length |
aa aa pos length |
distance | status | chr | pos |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chrX:52761227 | G | T | 1 | a0001c0002t0008 | 1 | HG02622.hp1 | 3_prime_UTR_variant | MODIFIER | c.*318G>T | SSX2B | ENSG00000268447.6 | transcript | ENST00000596480.6 | protein_coding | 8/8 | 783 | chrX | 52761227 | ||||||
chrX:52761341 | C | CCA | 2 | a0001c0001t0003 a0001c0002t0003 |
7 | HG00639.hp2 HG01243.hp1 HG02132.hp1 others(4): Show |
3_prime_UTR_variant | MODIFIER | c.*474_*475dupAC | SSX2B | ENSG00000268447.6 | transcript | ENST00000596480.6 | protein_coding | 8/8 | 941 | INFO_REALIGN_3_PRIME | chrX | 52761341 | |||||
chrX:52761341 | C | CCACA | 3 | a0001c0001t0001 a0001c0002t0001 a0002c0003t0001 |
17 | HG00621.hp1 HG02148.hp1 HG02273.hp2 others(14): Show |
3_prime_UTR_variant | MODIFIER | c.*472_*475dupACAC | SSX2B | ENSG00000268447.6 | transcript | ENST00000596480.6 | protein_coding | 8/8 | 941 | INFO_REALIGN_3_PRIME | chrX | 52761341 | |||||
chrX:52761341 | C | CCACACA | 2 | a0001c0001t0006 a0001c0002t0006 |
3 | HG02083.hp1 HG02922.hp1 NA18944.hp1 |
3_prime_UTR_variant | MODIFIER | c.*470_*475dupACACAC | SSX2B | ENSG00000268447.6 | transcript | ENST00000596480.6 | protein_coding | 8/8 | 941 | INFO_REALIGN_3_PRIME | chrX | 52761341 | |||||
chrX:52761341 | C | CCACACAC others(1): Show |
2 | a0001c0001t0005 a0001c0002t0005 |
3 | HG00738.hp1 HG01255.hp1 HG02622.hp2 |
3_prime_UTR_variant | MODIFIER | c.*468_*475dupACACAC others(2): Show |
SSX2B | ENSG00000268447.6 | transcript | ENST00000596480.6 | protein_coding | 8/8 | 941 | INFO_REALIGN_3_PRIME | chrX | 52761341 | |||||
chrX:52761341 | CCA | C | 1 | a0001c0001t0004 | 7 | HG00639.hp1 HG00673.hp1 HG01106.hp1 others(4): Show |
3_prime_UTR_variant | MODIFIER | c.*474_*475delAC | SSX2B | ENSG00000268447.6 | transcript | ENST00000596480.6 | protein_coding | 8/8 | 939 | INFO_REALIGN_3_PRIME | chrX | 52761341 | |||||
chrX:52761341 | CCACA | C | 1 | a0001c0001t0007 | 2 | HG01175.hp1 HG01496.hp2 |
3_prime_UTR_variant | MODIFIER | c.*472_*475delACAC | SSX2B | ENSG00000268447.6 | transcript | ENST00000596480.6 | protein_coding | 8/8 | 937 | INFO_REALIGN_3_PRIME | chrX | 52761341 |
view | chr:pos | ref | alt | # # of ghapid:genebody level |
ghapids | # # of haplotypeids |
haplotypeids | annotation | impact | hgvs_c | hgvs_p | genename | geneid | featuretype | featureid | genebody_biotype | rank | cdna cdna pos length |
cds cds pos length |
aa aa pos length |
distance | status | chr | pos |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chrX:52751353 | C | T | 1 | a0001c0001t0004g0034 | 1 | NA18953.hp1 | intron_variant | MODIFIER | c.-21+35C>T | SSX2B | ENSG00000268447.6 | transcript | ENST00000596480.6 | protein_coding | 1/7 | chrX | 52751353 | |||||||
chrX:52751354 | T | A | 1 | a0001c0001t0004g0034 | 1 | NA18953.hp1 | intron_variant | MODIFIER | c.-21+36T>A | SSX2B | ENSG00000268447.6 | transcript | ENST00000596480.6 | protein_coding | 1/7 | chrX | 52751354 | |||||||
chrX:52751355 | A | C | 1 | a0001c0001t0004g0034 | 1 | NA18953.hp1 | intron_variant | MODIFIER | c.-21+37A>C | SSX2B | ENSG00000268447.6 | transcript | ENST00000596480.6 | protein_coding | 1/7 | chrX | 52751355 | |||||||
chrX:52751465 | G | A | 1 | a0001c0001t0001g0009 | 1 | HG03831.hp1 | intron_variant | MODIFIER | c.-21+147G>A | SSX2B | ENSG00000268447.6 | transcript | ENST00000596480.6 | protein_coding | 1/7 | chrX | 52751465 | |||||||
chrX:52752513 | A | G | 1 | a0001c0001t0001g0033 | 1 | HG02965.hp1 | intron_variant | MODIFIER | c.-20-148A>G | SSX2B | ENSG00000268447.6 | transcript | ENST00000596480.6 | protein_coding | 1/7 | chrX | 52752513 | |||||||
chrX:52752599 | C | T | 1 | a0001c0002t0002g0032 | 1 | HG02559.hp1 | intron_variant | MODIFIER | c.-20-62C>T | SSX2B | ENSG00000268447.6 | transcript | ENST00000596480.6 | protein_coding | 1/7 | chrX | 52752599 | |||||||
chrX:52753156 | C | A | 1 | a0001c0001t0001g0010 | 1 | HG02559.hp2 | intron_variant | MODIFIER | c.70-32C>A | SSX2B | ENSG00000268447.6 | transcript | ENST00000596480.6 | protein_coding | 2/7 | chrX | 52753156 | |||||||
chrX:52753163 | T | G | 1 | a0001c0001t0001g0010 | 1 | HG02559.hp2 | intron_variant | MODIFIER | c.70-25T>G | SSX2B | ENSG00000268447.6 | transcript | ENST00000596480.6 | protein_coding | 2/7 | chrX | 52753163 | |||||||
chrX:52753169 | CT | C | 8 | a0001c0001t0001g0004 a0001c0001t0001g0005 a0001c0001t0001g0010 others(5): Show |
8 | HG01243.hp1 HG02559.hp2 HG02735.hp1 others(5): Show |
splice_region_variant&intron_variant | LOW | c.70-5delT | SSX2B | ENSG00000268447.6 | transcript | ENST00000596480.6 | protein_coding | 2/7 | INFO_REALIGN_3_PRIME | chrX | 52753169 | ||||||
chrX:52753632 | C | CT | 10 | a0001c0001t0001g0004 a0001c0001t0001g0005 a0001c0001t0001g0010 others(7): Show |
10 | HG00738.hp1 HG01243.hp1 HG02148.hp2 others(7): Show |
intron_variant | MODIFIER | c.185-188dupT | SSX2B | ENSG00000268447.6 | transcript | ENST00000596480.6 | protein_coding | 3/7 | INFO_REALIGN_3_PRIME | chrX | 52753632 | ||||||
chrX:52753632 | CTT | C | 8 | a0001c0001t0003g0015 a0001c0002t0001g0006 a0001c0002t0002g0007 others(5): Show |
8 | HG02132.hp1 HG02559.hp1 HG02622.hp1 others(5): Show |
intron_variant | MODIFIER | c.185-189_185-188del others(2): Show |
SSX2B | ENSG00000268447.6 | transcript | ENST00000596480.6 | protein_coding | 3/7 | INFO_REALIGN_3_PRIME | chrX | 52753632 | ||||||
chrX:52753662 | A | T | 1 | a0001c0001t0003g0015 | 1 | HG02132.hp1 | intron_variant | MODIFIER | c.185-176A>T | SSX2B | ENSG00000268447.6 | transcript | ENST00000596480.6 | protein_coding | 3/7 | chrX | 52753662 | |||||||
chrX:52753747 | T | C | 1 | a0001c0001t0002g0016 | 1 | HG00609.hp1 | intron_variant | MODIFIER | c.185-91T>C | SSX2B | ENSG00000268447.6 | transcript | ENST00000596480.6 | protein_coding | 3/7 | chrX | 52753747 | |||||||
chrX:52754048 | GA | G | 9 | a0001c0001t0001g0011 a0001c0001t0001g0026 a0001c0001t0002g0016 others(6): Show |
9 | HG00609.hp1 HG01255.hp1 HG01496.hp1 others(6): Show |
intron_variant | MODIFIER | c.280+131delA | SSX2B | ENSG00000268447.6 | transcript | ENST00000596480.6 | protein_coding | 4/7 | INFO_REALIGN_3_PRIME | chrX | 52754048 | ||||||
chrX:52754242 | A | C | 1 | a0001c0002t0005g0027 | 1 | HG01255.hp1 | intron_variant | MODIFIER | c.280+309A>C | SSX2B | ENSG00000268447.6 | transcript | ENST00000596480.6 | protein_coding | 4/7 | chrX | 52754242 | |||||||
chrX:52754466 | T | A | 1 | a0001c0001t0003g0015 | 1 | HG02132.hp1 | intron_variant | MODIFIER | c.280+533T>A | SSX2B | ENSG00000268447.6 | transcript | ENST00000596480.6 | protein_coding | 4/7 | chrX | 52754466 | |||||||
chrX:52754796 | G | GAA | 34 | a0001c0001t0001g0001 a0001c0001t0001g0002 a0001c0001t0001g0004 others(31): Show |
45 | HG00280.hp1 HG00609.hp1 HG00621.hp1 others(42): Show |
intron_variant | MODIFIER | c.280+874_280+875dup others(2): Show |
SSX2B | ENSG00000268447.6 | transcript | ENST00000596480.6 | protein_coding | 4/7 | INFO_REALIGN_3_PRIME | chrX | 52754796 | ||||||
chrX:52755110 | T | C | 34 | a0001c0001t0001g0001 a0001c0001t0001g0002 a0001c0001t0001g0004 others(31): Show |
45 | HG00280.hp1 HG00609.hp1 HG00621.hp1 others(42): Show |
intron_variant | MODIFIER | c.281-690T>C | SSX2B | ENSG00000268447.6 | transcript | ENST00000596480.6 | protein_coding | 4/7 | chrX | 52755110 | |||||||
chrX:52755238 | C | CAACTAAA | 34 | a0001c0001t0001g0001 a0001c0001t0001g0002 a0001c0001t0001g0004 others(31): Show |
45 | HG00280.hp1 HG00609.hp1 HG00621.hp1 others(42): Show |
intron_variant | MODIFIER | c.281-562_281-561ins others(7): Show |
SSX2B | ENSG00000268447.6 | transcript | ENST00000596480.6 | protein_coding | 4/7 | chrX | 52755238 | |||||||
chrX:52755239 | T | C | 34 | a0001c0001t0001g0001 a0001c0001t0001g0002 a0001c0001t0001g0004 others(31): Show |
45 | HG00280.hp1 HG00609.hp1 HG00621.hp1 others(42): Show |
intron_variant | MODIFIER | c.281-561T>C | SSX2B | ENSG00000268447.6 | transcript | ENST00000596480.6 | protein_coding | 4/7 | chrX | 52755239 | |||||||
chrX:52755362 | A | C | 1 | a0001c0002t0008g0014 | 1 | HG02622.hp1 | intron_variant | MODIFIER | c.281-438A>C | SSX2B | ENSG00000268447.6 | transcript | ENST00000596480.6 | protein_coding | 4/7 | chrX | 52755362 | |||||||
chrX:52755695 | T | C | 41 | a0001c0001t0001g0001 a0001c0001t0001g0002 a0001c0001t0001g0004 others(38): Show |
52 | HG00280.hp1 HG00609.hp1 HG00621.hp1 others(49): Show |
intron_variant | MODIFIER | c.281-105T>C | SSX2B | ENSG00000268447.6 | transcript | ENST00000596480.6 | protein_coding | 4/7 | chrX | 52755695 | |||||||
chrX:52755991 | C | T | 1 | a0001c0001t0001g0024 | 1 | HG03486.hp2 | intron_variant | MODIFIER | c.330+142C>T | SSX2B | ENSG00000268447.6 | transcript | ENST00000596480.6 | protein_coding | 5/7 | chrX | 52755991 | |||||||
chrX:52756773 | G | T | 2 | a0001c0001t0002g0029 a0001c0002t0005g0027 |
2 | HG01255.hp1 NA19043.hp1 |
intron_variant | MODIFIER | c.330+924G>T | SSX2B | ENSG00000268447.6 | transcript | ENST00000596480.6 | protein_coding | 5/7 | chrX | 52756773 | |||||||
chrX:52756836 | T | A | 1 | a0001c0002t0005g0027 | 1 | HG01255.hp1 | intron_variant | MODIFIER | c.330+987T>A | SSX2B | ENSG00000268447.6 | transcript | ENST00000596480.6 | protein_coding | 5/7 | chrX | 52756836 | |||||||
chrX:52757159 | CA | C | 26 | a0001c0001t0001g0001 a0001c0001t0001g0002 a0001c0001t0001g0005 others(23): Show |
34 | HG00280.hp1 HG00609.hp1 HG00621.hp1 others(31): Show |
intron_variant | MODIFIER | c.331-666delA | SSX2B | ENSG00000268447.6 | transcript | ENST00000596480.6 | protein_coding | 5/7 | INFO_REALIGN_3_PRIME | chrX | 52757159 | ||||||
chrX:52757159 | CAA | C | 5 | a0001c0001t0001g0012 a0001c0001t0003g0015 a0001c0001t0005g0031 others(2): Show |
5 | HG00738.hp1 HG01255.hp1 HG02132.hp1 others(2): Show |
intron_variant | MODIFIER | c.331-667_331-666del others(2): Show |
SSX2B | ENSG00000268447.6 | transcript | ENST00000596480.6 | protein_coding | 5/7 | INFO_REALIGN_3_PRIME | chrX | 52757159 | ||||||
chrX:52757184 | A | G | 1 | a0001c0001t0003g0023 | 1 | NA19060.hp1 | intron_variant | MODIFIER | c.331-670A>G | SSX2B | ENSG00000268447.6 | transcript | ENST00000596480.6 | protein_coding | 5/7 | chrX | 52757184 | |||||||
chrX:52757185 | A | G | 1 | a0001c0001t0002g0029 | 1 | NA19043.hp1 | intron_variant | MODIFIER | c.331-669A>G | SSX2B | ENSG00000268447.6 | transcript | ENST00000596480.6 | protein_coding | 5/7 | chrX | 52757185 | |||||||
chrX:52757488 | G | A | 3 | a0001c0001t0001g0004 a0001c0001t0001g0012 a0001c0001t0003g0004 |
3 | HG01243.hp1 HG02895.hp1 HG03225.hp1 |
intron_variant | MODIFIER | c.331-366G>A | SSX2B | ENSG00000268447.6 | transcript | ENST00000596480.6 | protein_coding | 5/7 | chrX | 52757488 | |||||||
chrX:52757540 | T | C | 1 | a0001c0001t0001g0011 | 1 | HG02735.hp1 | intron_variant | MODIFIER | c.331-314T>C | SSX2B | ENSG00000268447.6 | transcript | ENST00000596480.6 | protein_coding | 5/7 | chrX | 52757540 | |||||||
chrX:52757652 | T | C | 1 | a0001c0001t0002g0017 | 1 | NA19076.hp1 | intron_variant | MODIFIER | c.331-202T>C | SSX2B | ENSG00000268447.6 | transcript | ENST00000596480.6 | protein_coding | 5/7 | chrX | 52757652 | |||||||
chrX:52757653 | C | T | 1 | a0001c0001t0002g0017 | 1 | NA19076.hp1 | intron_variant | MODIFIER | c.331-201C>T | SSX2B | ENSG00000268447.6 | transcript | ENST00000596480.6 | protein_coding | 5/7 | chrX | 52757653 | |||||||
chrX:52758311 | A | C | 1 | a0001c0001t0001g0021 | 1 | HG03654.hp1 | intron_variant | MODIFIER | c.466+322A>C | SSX2B | ENSG00000268447.6 | transcript | ENST00000596480.6 | protein_coding | 6/7 | chrX | 52758311 | |||||||
chrX:52758395 | C | CAGGTGTA others(8): Show |
1 | a0001c0001t0002g0017 | 1 | NA19076.hp1 | intron_variant | MODIFIER | c.466+408_466+422dup others(15): Show |
SSX2B | ENSG00000268447.6 | transcript | ENST00000596480.6 | protein_coding | 6/7 | INFO_REALIGN_3_PRIME | chrX | 52758395 | ||||||
chrX:52758555 | C | G | 1 | a0001c0002t0002g0032 | 1 | HG02559.hp1 | intron_variant | MODIFIER | c.466+566C>G | SSX2B | ENSG00000268447.6 | transcript | ENST00000596480.6 | protein_coding | 6/7 | chrX | 52758555 | |||||||
chrX:52759167 | G | A | 1 | a0001c0001t0002g0018 | 1 | HG03831.hp2 | intron_variant | MODIFIER | c.467-1177G>A | SSX2B | ENSG00000268447.6 | transcript | ENST00000596480.6 | protein_coding | 6/7 | chrX | 52759167 | |||||||
chrX:52759374 | C | T | 1 | a0001c0001t0005g0019 | 1 | HG02622.hp2 | intron_variant | MODIFIER | c.467-970C>T | SSX2B | ENSG00000268447.6 | transcript | ENST00000596480.6 | protein_coding | 6/7 | chrX | 52759374 | |||||||
chrX:52759554 | A | G | 17 | a0001c0001t0001g0001 a0001c0001t0001g0011 a0001c0001t0001g0021 others(14): Show |
24 | HG00280.hp1 HG00609.hp1 HG00621.hp1 others(21): Show |
intron_variant | MODIFIER | c.467-790A>G | SSX2B | ENSG00000268447.6 | transcript | ENST00000596480.6 | protein_coding | 6/7 | chrX | 52759554 | |||||||
chrX:52759888 | A | G | 1 | a0001c0001t0002g0029 | 1 | NA19043.hp1 | intron_variant | MODIFIER | c.467-456A>G | SSX2B | ENSG00000268447.6 | transcript | ENST00000596480.6 | protein_coding | 6/7 | chrX | 52759888 | |||||||
chrX:52760092 | C | T | 1 | a0001c0001t0001g0009 | 1 | HG03831.hp1 | intron_variant | MODIFIER | c.467-252C>T | SSX2B | ENSG00000268447.6 | transcript | ENST00000596480.6 | protein_coding | 6/7 | chrX | 52760092 | |||||||
chrX:52760705 | T | C | 2 | a0001c0001t0003g0020 a0001c0001t0004g0025 |
2 | HG00639.hp2 HG01496.hp1 |
intron_variant | MODIFIER | c.*5-209T>C | SSX2B | ENSG00000268447.6 | transcript | ENST00000596480.6 | protein_coding | 7/7 | chrX | 52760705 |