JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SSX2IP_chr1_84638706_84695461	0/0	t0019	3908	1	1	0	0	0	0	copy fasta	SSX2IP	chr1	84638706	84695461
SSX2IP_chr1_84638706_84695461	0/0	t0020	3908	1	0	0	1	0	0	copy fasta	SSX2IP	chr1	84638706	84695461
SSX2IP_chr1_84638706_84695461	0/0	t0021	3908	1	0	0	1	0	0	copy fasta	SSX2IP	chr1	84638706	84695461
SSX2IP_chr1_84638706_84695461	0/0	t0022	3908	1	0	0	0	0	1	copy fasta	SSX2IP	chr1	84638706	84695461
SSX2IP_chr1_84638706_84695461	0/0	t0023	3908	1	1	0	0	0	0	copy fasta	SSX2IP	chr1	84638706	84695461
SSX2IP_chr1_84638706_84695461	0/1	t0024	3908	1	0	0	0	0	0	copy fasta	SSX2IP	chr1	84638706	84695461
SSX2IP_chr1_84638706_84695461	0/0	t0025	3908	1	1	0	0	0	0	copy fasta	SSX2IP	chr1	84638706	84695461
SSX2IP_chr1_84638706_84695461	0/0	t0026	3908	1	0	0	0	0	1	copy fasta	SSX2IP	chr1	84638706	84695461
SSX2_chrX_52691896_52712178	0/0	t0001	719	28	7	10	9	0	2	copy fasta	SSX2	chrX	52691896	52712178
SSX2_chrX_52691896_52712178	0/0	t0002	717	16	4	5	4	0	3	copy fasta	SSX2	chrX	52691896	52712178
SSX2_chrX_52691896_52712178	0/0	t0003	721	12	3	2	2	2	3	copy fasta	SSX2	chrX	52691896	52712178
SSX2_chrX_52691896_52712178	0/0	t0004	715	12	2	4	4	1	1	copy fasta	SSX2	chrX	52691896	52712178
SSX2_chrX_52691896_52712178	0/0	t0005	713	9	2	0	4	0	3	copy fasta	SSX2	chrX	52691896	52712178
SSX2_chrX_52691896_52712178	0/0	t0006	723	4	0	3	0	0	1	copy fasta	SSX2	chrX	52691896	52712178
SSX2_chrX_52691896_52712178	0/0	t0007	711	4	2	0	1	0	1	copy fasta	SSX2	chrX	52691896	52712178
SSX2_chrX_52691896_52712178	0/0	t0008	718	2	1	0	1	0	0	copy fasta	SSX2	chrX	52691896	52712178
SSX2_chrX_52691896_52712178	0/0	t0009	709	2	1	0	1	0	0	copy fasta	SSX2	chrX	52691896	52712178
SSX2_chrX_52691896_52712178	0/0	t0010	717	1	0	0	1	0	0	copy fasta	SSX2	chrX	52691896	52712178
SSX2_chrX_52691896_52712178	0/0	t0011	717	1	0	0	1	0	0	copy fasta	SSX2	chrX	52691896	52712178
SSX2_chrX_52691896_52712178	0/0	t0012	715	1	1	0	0	0	0	copy fasta	SSX2	chrX	52691896	52712178
SSX2_chrX_52691896_52712178	0/0	t0013	723	1	0	0	1	0	0	copy fasta	SSX2	chrX	52691896	52712178
SSX2_chrX_52691896_52712178	0/0	t0014	720	1	1	0	0	0	0	copy fasta	SSX2	chrX	52691896	52712178
SSX2_chrX_52691896_52712178	0/0	t0015	717	1	0	0	1	0	0	copy fasta	SSX2	chrX	52691896	52712178
SSX2_chrX_52691896_52712178	0/0	t0016	718	1	0	0	1	0	0	copy fasta	SSX2	chrX	52691896	52712178
SSX2_chrX_52691896_52712178	0/0	t0017	707	1	0	1	0	0	0	copy fasta	SSX2	chrX	52691896	52712178
SSX2_chrX_52691896_52712178	0/0	t0018	723	1	0	0	1	0	0	copy fasta	SSX2	chrX	52691896	52712178
SSX3_chrX_48341427_48361703	0/1	t0001	694	158	35	33	67	2	20	copy fasta	SSX3	chrX	48341427	48361703
SSX3_chrX_48341427_48361703	0/0	t0002	704	100	6	19	53	10	12	copy fasta	SSX3	chrX	48341427	48361703
SSX3_chrX_48341427_48361703	1/0	t0003	704	21	19	1	0	0	0	copy fasta	SSX3	chrX	48341427	48361703
SSX3_chrX_48341427_48361703	0/0	t0004	694	20	1	3	15	1	0	copy fasta	SSX3	chrX	48341427	48361703
SSX3_chrX_48341427_48361703	0/0	t0005	706	6	0	2	2	0	2	copy fasta	SSX3	chrX	48341427	48361703
SSX3_chrX_48341427_48361703	0/0	t0006	705	5	4	1	0	0	0	copy fasta	SSX3	chrX	48341427	48361703
SSX3_chrX_48341427_48361703	0/0	t0007	707	4	4	0	0	0	0	copy fasta	SSX3	chrX	48341427	48361703
SSX3_chrX_48341427_48361703	0/0	t0008	703	3	3	0	0	0	0	copy fasta	SSX3	chrX	48341427	48361703
SSX3_chrX_48341427_48361703	0/0	t0009	694	2	2	0	0	0	0	copy fasta	SSX3	chrX	48341427	48361703
SSX3_chrX_48341427_48361703	0/0	t0010	704	2	2	0	0	0	0	copy fasta	SSX3	chrX	48341427	48361703
SSX3_chrX_48341427_48361703	0/0	t0011	702	2	0	0	2	0	0	copy fasta	SSX3	chrX	48341427	48361703
SSX3_chrX_48341427_48361703	0/0	t0012	700	2	0	0	2	0	0	copy fasta	SSX3	chrX	48341427	48361703
SSX3_chrX_48341427_48361703	0/0	t0013	696	2	0	0	2	0	0	copy fasta	SSX3	chrX	48341427	48361703
SSX3_chrX_48341427_48361703	0/0	t0014	694	1	0	0	1	0	0	copy fasta	SSX3	chrX	48341427	48361703
SSX3_chrX_48341427_48361703	0/0	t0015	710	1	0	1	0	0	0	copy fasta	SSX3	chrX	48341427	48361703
SSX3_chrX_48341427_48361703	0/0	t0016	696	1	0	0	1	0	0	copy fasta	SSX3	chrX	48341427	48361703
SSX3_chrX_48341427_48361703	0/0	t0017	694	1	0	0	1	0	0	copy fasta	SSX3	chrX	48341427	48361703
SSX4B_chrX_48397082_48416960	0/0	t0001	712	113	23	17	54	5	14	copy fasta	SSX4B	chrX	48397082	48416960
SSX4B_chrX_48397082_48416960	0/0	t0002	712	51	12	10	15	3	11	copy fasta	SSX4B	chrX	48397082	48416960
SSX4B_chrX_48397082_48416960	0/0	t0003	712	6	6	0	0	0	0	copy fasta	SSX4B	chrX	48397082	48416960
SSX4B_chrX_48397082_48416960	0/0	t0004	712	5	4	1	0	0	0	copy fasta	SSX4B	chrX	48397082	48416960
SSX4B_chrX_48397082_48416960	0/0	t0005	715	1	0	0	1	0	0	copy fasta	SSX4B	chrX	48397082	48416960
SSX4B_chrX_48397082_48416960	0/0	t0006	712	1	0	0	1	0	0	copy fasta	SSX4B	chrX	48397082	48416960
SSX4B_chrX_48397082_48416960	0/0	t0007	711	1	0	0	1	0	0	copy fasta	SSX4B	chrX	48397082	48416960