Search by Genic region
Multiple Alignments (by aa haplotype frequency)
Multiple Alignments (by aa haplotype similarity)
| Item | Value |
|---|---|
| geneid | 6757 |
| ensemblid | ENSG00000241476.9 |
| hgncid | 11336 |
| symbol | SSX2 |
| name | SSX family member 2 |
| refseq_nuc | NM_175698.4 |
| refseq_prot | NP_783629.1 |
| ensembl_nuc | ENST00000337502.6 |
| ensembl_prot | ENSP00000338561.5 |
| mane_status | MANE Select |
| chr | chrX |
| start | 52696896 |
| end | 52707178 |
| strand | - |
| ver | v1.2 |
| region | chrX:52696896-52707178 |
| region5000 | chrX:52691896-52712178 |
| regionname0 | SSX2_chrX_52696896_52707178 |
| regionname5000 | SSX2_chrX_52691896_52712178 |
| ahapid | grch38/chm13v2 | alen | total | AFR | AMR | EAS | EUR | SAS | JPT | regionname | genename | aa | chr | start | end |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| a0001 | 0/0 | 188 | 95 | 23 | 25 | 30 | 3 | 14 | 14 | SSX2_chrX_52691896_52712178 | SSX2 | MNGDD others(183): Show |
chrX | 52691896 | 52712178 |
| a0002 | 0/0 | 188 | 2 | 0 | 0 | 2 | 0 | 0 | 2 | SSX2_chrX_52691896_52712178 | SSX2 | MNGDD others(183): Show |
chrX | 52691896 | 52712178 |
| a0003 | 0/0 | 188 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | SSX2_chrX_52691896_52712178 | SSX2 | MNGDD others(183): Show |
chrX | 52691896 | 52712178 |
| achapid | grch38/chm13v2 | alen | clen | total | AFR | AMR | EAS | EUR | SAS | regionname | genename | aseq | cseq | chr | start | end |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| a0001c0001 | 0/0 | 564 | 82 | 19 | 22 | 27 | 2 | 12 | SSX2_chrX_52691896_52712178 | SSX2 | ATGAA others(559): Show |
chrX | 52691896 | 52712178 | ||
| a0001c0002 | 0/0 | 564 | 13 | 4 | 3 | 3 | 1 | 2 | SSX2_chrX_52691896_52712178 | SSX2 | ATGAA others(559): Show |
chrX | 52691896 | 52712178 | ||
| a0002c0003 | 0/0 | 564 | 2 | 0 | 0 | 2 | 0 | 0 | SSX2_chrX_52691896_52712178 | SSX2 | ATGAA others(559): Show |
chrX | 52691896 | 52712178 | ||
| a0003c0004 | 0/0 | 564 | 1 | 1 | 0 | 0 | 0 | 0 | SSX2_chrX_52691896_52712178 | SSX2 | ATGAA others(559): Show |
chrX | 52691896 | 52712178 |
| acthapid | grch38chm13v2 | tlen | total | AFR | AMR | EAS | EUR | SAS | regionname | genename | tseq | chr | start | end |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| a0001c0001t0001 | 0/0 | 1285 | 25 | 6 | 10 | 7 | 0 | 2 | SSX2_chrX_52691896_52712178 | SSX2 | CTTTC others(1280): Show |
chrX | 52691896 | 52712178 |
| a0001c0001t0002 | 0/0 | 1283 | 14 | 4 | 3 | 4 | 0 | 3 | SSX2_chrX_52691896_52712178 | SSX2 | CTTTC others(1278): Show |
chrX | 52691896 | 52712178 |
| a0001c0001t0003 | 0/0 | 1281 | 13 | 1 | 4 | 6 | 1 | 1 | SSX2_chrX_52691896_52712178 | SSX2 | CTTTC others(1276): Show |
chrX | 52691896 | 52712178 |
| a0001c0001t0004 | 0/0 | 1287 | 11 | 3 | 2 | 2 | 1 | 3 | SSX2_chrX_52691896_52712178 | SSX2 | CTTTC others(1282): Show |
chrX | 52691896 | 52712178 |
| a0001c0001t0005 | 0/0 | 1279 | 6 | 1 | 0 | 3 | 0 | 2 | SSX2_chrX_52691896_52712178 | SSX2 | CTTTC others(1274): Show |
chrX | 52691896 | 52712178 |
| a0001c0001t0006 | 0/0 | 1289 | 4 | 0 | 3 | 0 | 0 | 1 | SSX2_chrX_52691896_52712178 | SSX2 | CTTTC others(1284): Show |
chrX | 52691896 | 52712178 |
| a0001c0001t0007 | 0/0 | 1277 | 3 | 2 | 0 | 1 | 0 | 0 | SSX2_chrX_52691896_52712178 | SSX2 | CTTTC others(1272): Show |
chrX | 52691896 | 52712178 |
| a0001c0001t0008 | 0/0 | 1286 | 1 | 0 | 0 | 1 | 0 | 0 | SSX2_chrX_52691896_52712178 | SSX2 | CTTTC others(1281): Show |
chrX | 52691896 | 52712178 |
| a0001c0001t0009 | 0/0 | 1284 | 2 | 1 | 0 | 1 | 0 | 0 | SSX2_chrX_52691896_52712178 | SSX2 | CTTTC others(1279): Show |
chrX | 52691896 | 52712178 |
| a0001c0001t0010 | 0/0 | 1275 | 1 | 0 | 0 | 1 | 0 | 0 | SSX2_chrX_52691896_52712178 | SSX2 | CTTTC others(1270): Show |
chrX | 52691896 | 52712178 |
| a0001c0001t0011 | 0/0 | 1281 | 1 | 1 | 0 | 0 | 0 | 0 | SSX2_chrX_52691896_52712178 | SSX2 | CTTTC others(1276): Show |
chrX | 52691896 | 52712178 |
| a0001c0001t0012 | 0/0 | 1289 | 1 | 0 | 0 | 1 | 0 | 0 | SSX2_chrX_52691896_52712178 | SSX2 | CTTTC others(1284): Show |
chrX | 52691896 | 52712178 |
| a0001c0002t0001 | 0/0 | 1285 | 3 | 1 | 0 | 2 | 0 | 0 | SSX2_chrX_52691896_52712178 | SSX2 | CTTTC others(1280): Show |
chrX | 52691896 | 52712178 |
| a0001c0002t0002 | 0/0 | 1283 | 2 | 0 | 2 | 0 | 0 | 0 | SSX2_chrX_52691896_52712178 | SSX2 | CTTTC others(1278): Show |
chrX | 52691896 | 52712178 |
| a0001c0002t0003 | 0/0 | 1281 | 2 | 1 | 1 | 0 | 0 | 0 | SSX2_chrX_52691896_52712178 | SSX2 | CTTTC others(1276): Show |
chrX | 52691896 | 52712178 |
| a0001c0002t0004 | 0/0 | 1287 | 1 | 0 | 0 | 0 | 1 | 0 | SSX2_chrX_52691896_52712178 | SSX2 | CTTTC others(1282): Show |
chrX | 52691896 | 52712178 |
| a0001c0002t0005 | 0/0 | 1279 | 3 | 1 | 0 | 1 | 0 | 1 | SSX2_chrX_52691896_52712178 | SSX2 | CTTTC others(1274): Show |
chrX | 52691896 | 52712178 |
| a0001c0002t0007 | 0/0 | 1277 | 1 | 0 | 0 | 0 | 0 | 1 | SSX2_chrX_52691896_52712178 | SSX2 | CTTTC others(1272): Show |
chrX | 52691896 | 52712178 |
| a0001c0002t0010 | 0/0 | 1275 | 1 | 1 | 0 | 0 | 0 | 0 | SSX2_chrX_52691896_52712178 | SSX2 | CTTTC others(1270): Show |
chrX | 52691896 | 52712178 |
| a0002c0003t0001 | 0/0 | 1285 | 2 | 0 | 0 | 2 | 0 | 0 | SSX2_chrX_52691896_52712178 | SSX2 | CTTTC others(1280): Show |
chrX | 52691896 | 52712178 |
| a0003c0004t0008 | 0/0 | 1286 | 1 | 1 | 0 | 0 | 0 | 0 | SSX2_chrX_52691896_52712178 | SSX2 | CTTTC others(1281): Show |
chrX | 52691896 | 52712178 |
| actghapid | grch38/chm13v2 | total | AFR | AMR | EAS | EUR | SAS | regionname | genename | chr | start | end |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| a0001c0001t0001g0001 | 0/0 | 9 | 2 | 4 | 3 | 0 | 0 | SSX2_chrX_52691896_52712178 | SSX2 | chrX | 52691896 | 52712178 |
| a0001c0001t0001g0005 | 0/0 | 4 | 0 | 1 | 2 | 0 | 1 | SSX2_chrX_52691896_52712178 | SSX2 | chrX | 52691896 | 52712178 |
| a0001c0001t0001g0017 | 0/0 | 1 | 0 | 1 | 0 | 0 | 0 | SSX2_chrX_52691896_52712178 | SSX2 | chrX | 52691896 | 52712178 |
| a0001c0001t0001g0018 | 0/0 | 1 | 1 | 0 | 0 | 0 | 0 | SSX2_chrX_52691896_52712178 | SSX2 | chrX | 52691896 | 52712178 |
| a0001c0001t0001g0029 | 0/0 | 1 | 1 | 0 | 0 | 0 | 0 | SSX2_chrX_52691896_52712178 | SSX2 | chrX | 52691896 | 52712178 |
| a0001c0001t0001g0030 | 0/0 | 1 | 0 | 1 | 0 | 0 | 0 | SSX2_chrX_52691896_52712178 | SSX2 | chrX | 52691896 | 52712178 |
| a0001c0001t0001g0031 | 0/0 | 1 | 0 | 0 | 1 | 0 | 0 | SSX2_chrX_52691896_52712178 | SSX2 | chrX | 52691896 | 52712178 |
| a0001c0001t0001g0032 | 0/0 | 1 | 0 | 0 | 0 | 0 | 1 | SSX2_chrX_52691896_52712178 | SSX2 | chrX | 52691896 | 52712178 |
| a0001c0001t0001g0044 | 0/0 | 1 | 0 | 0 | 1 | 0 | 0 | SSX2_chrX_52691896_52712178 | SSX2 | chrX | 52691896 | 52712178 |
| a0001c0001t0001g0049 | 0/0 | 1 | 1 | 0 | 0 | 0 | 0 | SSX2_chrX_52691896_52712178 | SSX2 | chrX | 52691896 | 52712178 |
| a0001c0001t0001g0050 | 0/0 | 1 | 1 | 0 | 0 | 0 | 0 | SSX2_chrX_52691896_52712178 | SSX2 | chrX | 52691896 | 52712178 |
| a0001c0001t0001g0057 | 0/0 | 1 | 0 | 1 | 0 | 0 | 0 | SSX2_chrX_52691896_52712178 | SSX2 | chrX | 52691896 | 52712178 |
| a0001c0001t0001g0059 | 0/0 | 1 | 0 | 1 | 0 | 0 | 0 | SSX2_chrX_52691896_52712178 | SSX2 | chrX | 52691896 | 52712178 |
| a0001c0001t0001g0060 | 0/0 | 1 | 0 | 1 | 0 | 0 | 0 | SSX2_chrX_52691896_52712178 | SSX2 | chrX | 52691896 | 52712178 |
| a0001c0001t0002g0003 | 0/0 | 5 | 0 | 0 | 3 | 0 | 2 | SSX2_chrX_52691896_52712178 | SSX2 | chrX | 52691896 | 52712178 |
| a0001c0001t0002g0007 | 0/0 | 3 | 1 | 2 | 0 | 0 | 0 | SSX2_chrX_52691896_52712178 | SSX2 | chrX | 52691896 | 52712178 |
| a0001c0001t0002g0014 | 0/0 | 2 | 0 | 1 | 0 | 0 | 1 | SSX2_chrX_52691896_52712178 | SSX2 | chrX | 52691896 | 52712178 |
| a0001c0001t0002g0026 | 0/0 | 1 | 1 | 0 | 0 | 0 | 0 | SSX2_chrX_52691896_52712178 | SSX2 | chrX | 52691896 | 52712178 |
| a0001c0001t0002g0042 | 0/0 | 1 | 1 | 0 | 0 | 0 | 0 | SSX2_chrX_52691896_52712178 | SSX2 | chrX | 52691896 | 52712178 |
| a0001c0001t0002g0046 | 0/0 | 1 | 0 | 0 | 1 | 0 | 0 | SSX2_chrX_52691896_52712178 | SSX2 | chrX | 52691896 | 52712178 |
| a0001c0001t0002g0053 | 0/0 | 1 | 1 | 0 | 0 | 0 | 0 | SSX2_chrX_52691896_52712178 | SSX2 | chrX | 52691896 | 52712178 |
| a0001c0001t0003g0002 | 0/0 | 7 | 0 | 4 | 2 | 1 | 0 | SSX2_chrX_52691896_52712178 | SSX2 | chrX | 52691896 | 52712178 |
| a0001c0001t0003g0008 | 0/0 | 3 | 0 | 0 | 2 | 0 | 1 | SSX2_chrX_52691896_52712178 | SSX2 | chrX | 52691896 | 52712178 |
| a0001c0001t0003g0028 | 0/0 | 1 | 0 | 0 | 1 | 0 | 0 | SSX2_chrX_52691896_52712178 | SSX2 | chrX | 52691896 | 52712178 |
| a0001c0001t0003g0038 | 0/0 | 1 | 0 | 0 | 1 | 0 | 0 | SSX2_chrX_52691896_52712178 | SSX2 | chrX | 52691896 | 52712178 |
| a0001c0001t0003g0048 | 0/0 | 1 | 1 | 0 | 0 | 0 | 0 | SSX2_chrX_52691896_52712178 | SSX2 | chrX | 52691896 | 52712178 |
| a0001c0001t0004g0004 | 0/0 | 4 | 0 | 1 | 2 | 0 | 1 | SSX2_chrX_52691896_52712178 | SSX2 | chrX | 52691896 | 52712178 |
| a0001c0001t0004g0010 | 0/0 | 2 | 2 | 0 | 0 | 0 | 0 | SSX2_chrX_52691896_52712178 | SSX2 | chrX | 52691896 | 52712178 |
| a0001c0001t0004g0027 | 0/0 | 1 | 0 | 0 | 0 | 0 | 1 | SSX2_chrX_52691896_52712178 | SSX2 | chrX | 52691896 | 52712178 |
| a0001c0001t0004g0035 | 0/0 | 1 | 0 | 1 | 0 | 0 | 0 | SSX2_chrX_52691896_52712178 | SSX2 | chrX | 52691896 | 52712178 |
| a0001c0001t0004g0040 | 0/0 | 1 | 1 | 0 | 0 | 0 | 0 | SSX2_chrX_52691896_52712178 | SSX2 | chrX | 52691896 | 52712178 |
| a0001c0001t0004g0043 | 0/0 | 1 | 0 | 0 | 0 | 1 | 0 | SSX2_chrX_52691896_52712178 | SSX2 | chrX | 52691896 | 52712178 |
| a0001c0001t0004g0058 | 0/0 | 1 | 0 | 0 | 0 | 0 | 1 | SSX2_chrX_52691896_52712178 | SSX2 | chrX | 52691896 | 52712178 |
| a0001c0001t0005g0009 | 0/0 | 3 | 0 | 0 | 2 | 0 | 1 | SSX2_chrX_52691896_52712178 | SSX2 | chrX | 52691896 | 52712178 |
| a0001c0001t0005g0036 | 0/0 | 1 | 0 | 0 | 0 | 0 | 1 | SSX2_chrX_52691896_52712178 | SSX2 | chrX | 52691896 | 52712178 |
| a0001c0001t0005g0045 | 0/0 | 1 | 0 | 0 | 1 | 0 | 0 | SSX2_chrX_52691896_52712178 | SSX2 | chrX | 52691896 | 52712178 |
| a0001c0001t0005g0061 | 0/0 | 1 | 1 | 0 | 0 | 0 | 0 | SSX2_chrX_52691896_52712178 | SSX2 | chrX | 52691896 | 52712178 |
| a0001c0001t0006g0006 | 0/0 | 3 | 0 | 2 | 0 | 0 | 1 | SSX2_chrX_52691896_52712178 | SSX2 | chrX | 52691896 | 52712178 |
| a0001c0001t0006g0034 | 0/0 | 1 | 0 | 1 | 0 | 0 | 0 | SSX2_chrX_52691896_52712178 | SSX2 | chrX | 52691896 | 52712178 |
| a0001c0001t0007g0039 | 0/0 | 1 | 0 | 0 | 1 | 0 | 0 | SSX2_chrX_52691896_52712178 | SSX2 | chrX | 52691896 | 52712178 |
| a0001c0001t0007g0051 | 0/0 | 1 | 1 | 0 | 0 | 0 | 0 | SSX2_chrX_52691896_52712178 | SSX2 | chrX | 52691896 | 52712178 |
| a0001c0001t0007g0052 | 0/0 | 1 | 1 | 0 | 0 | 0 | 0 | SSX2_chrX_52691896_52712178 | SSX2 | chrX | 52691896 | 52712178 |
| a0001c0001t0008g0041 | 0/0 | 1 | 0 | 0 | 1 | 0 | 0 | SSX2_chrX_52691896_52712178 | SSX2 | chrX | 52691896 | 52712178 |
| a0001c0001t0009g0013 | 0/0 | 2 | 1 | 0 | 1 | 0 | 0 | SSX2_chrX_52691896_52712178 | SSX2 | chrX | 52691896 | 52712178 |
| a0001c0001t0010g0033 | 0/0 | 1 | 0 | 0 | 1 | 0 | 0 | SSX2_chrX_52691896_52712178 | SSX2 | chrX | 52691896 | 52712178 |
| a0001c0001t0011g0047 | 0/0 | 1 | 1 | 0 | 0 | 0 | 0 | SSX2_chrX_52691896_52712178 | SSX2 | chrX | 52691896 | 52712178 |
| a0001c0001t0012g0037 | 0/0 | 1 | 0 | 0 | 1 | 0 | 0 | SSX2_chrX_52691896_52712178 | SSX2 | chrX | 52691896 | 52712178 |
| a0001c0002t0001g0011 | 0/0 | 2 | 0 | 0 | 2 | 0 | 0 | SSX2_chrX_52691896_52712178 | SSX2 | chrX | 52691896 | 52712178 |
| a0001c0002t0001g0056 | 0/0 | 1 | 1 | 0 | 0 | 0 | 0 | SSX2_chrX_52691896_52712178 | SSX2 | chrX | 52691896 | 52712178 |
| a0001c0002t0002g0016 | 0/0 | 1 | 0 | 1 | 0 | 0 | 0 | SSX2_chrX_52691896_52712178 | SSX2 | chrX | 52691896 | 52712178 |
| a0001c0002t0002g0025 | 0/0 | 1 | 0 | 1 | 0 | 0 | 0 | SSX2_chrX_52691896_52712178 | SSX2 | chrX | 52691896 | 52712178 |
| a0001c0002t0003g0019 | 0/0 | 1 | 0 | 1 | 0 | 0 | 0 | SSX2_chrX_52691896_52712178 | SSX2 | chrX | 52691896 | 52712178 |
| a0001c0002t0003g0021 | 0/0 | 1 | 1 | 0 | 0 | 0 | 0 | SSX2_chrX_52691896_52712178 | SSX2 | chrX | 52691896 | 52712178 |
| a0001c0002t0004g0020 | 0/0 | 1 | 0 | 0 | 0 | 1 | 0 | SSX2_chrX_52691896_52712178 | SSX2 | chrX | 52691896 | 52712178 |
| a0001c0002t0005g0022 | 0/0 | 1 | 0 | 0 | 0 | 0 | 1 | SSX2_chrX_52691896_52712178 | SSX2 | chrX | 52691896 | 52712178 |
| a0001c0002t0005g0024 | 0/0 | 1 | 1 | 0 | 0 | 0 | 0 | SSX2_chrX_52691896_52712178 | SSX2 | chrX | 52691896 | 52712178 |
| a0001c0002t0005g0054 | 0/0 | 1 | 0 | 0 | 1 | 0 | 0 | SSX2_chrX_52691896_52712178 | SSX2 | chrX | 52691896 | 52712178 |
| a0001c0002t0007g0023 | 0/0 | 1 | 0 | 0 | 0 | 0 | 1 | SSX2_chrX_52691896_52712178 | SSX2 | chrX | 52691896 | 52712178 |
| a0001c0002t0010g0055 | 0/0 | 1 | 1 | 0 | 0 | 0 | 0 | SSX2_chrX_52691896_52712178 | SSX2 | chrX | 52691896 | 52712178 |
| a0002c0003t0001g0012 | 0/0 | 2 | 0 | 0 | 2 | 0 | 0 | SSX2_chrX_52691896_52712178 | SSX2 | chrX | 52691896 | 52712178 |
| a0003c0004t0008g0015 | 0/0 | 1 | 1 | 0 | 0 | 0 | 0 | SSX2_chrX_52691896_52712178 | SSX2 | chrX | 52691896 | 52712178 |
| sampleid | ID haplotypeid
|
ahapid | chapid | thapid | ghapid | gpopname | popname | regionname | genename | chr | start | end |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| HG00099 | hp1 | a0001 | c0002 | t0004 | g0020 | EUR | GBR | SSX2_chrX_52691896_52712178 | SSX2 | chrX | 52691896 | 52712178 |
| HG00099 | hp2 | a0001 | c0001 | t0004 | g0043 | EUR | GBR | SSX2_chrX_52691896_52712178 | SSX2 | chrX | 52691896 | 52712178 |
| HG00280 | hp1 | a0001 | c0001 | t0003 | g0002 | EUR | FIN | SSX2_chrX_52691896_52712178 | SSX2 | chrX | 52691896 | 52712178 |
| HG00408 | hp1 | a0001 | c0001 | t0005 | g0009 | EAS | CHS | SSX2_chrX_52691896_52712178 | SSX2 | chrX | 52691896 | 52712178 |
| HG00408 | hp2 | a0001 | c0001 | t0009 | g0013 | EAS | CHS | SSX2_chrX_52691896_52712178 | SSX2 | chrX | 52691896 | 52712178 |
| HG00438 | hp1 | a0001 | c0001 | t0005 | g0009 | EAS | CHS | SSX2_chrX_52691896_52712178 | SSX2 | chrX | 52691896 | 52712178 |
| HG00438 | hp2 | a0001 | c0001 | t0010 | g0033 | EAS | CHS | SSX2_chrX_52691896_52712178 | SSX2 | chrX | 52691896 | 52712178 |
| HG00609 | hp1 | a0001 | c0001 | t0003 | g0028 | EAS | CHS | SSX2_chrX_52691896_52712178 | SSX2 | chrX | 52691896 | 52712178 |
| HG00673 | hp1 | a0001 | c0001 | t0003 | g0008 | EAS | CHS | SSX2_chrX_52691896_52712178 | SSX2 | chrX | 52691896 | 52712178 |
| HG00741 | hp1 | a0001 | c0001 | t0001 | g0005 | AMR | PUR | SSX2_chrX_52691896_52712178 | SSX2 | chrX | 52691896 | 52712178 |
| HG00741 | hp2 | a0001 | c0001 | t0006 | g0006 | AMR | PUR | SSX2_chrX_52691896_52712178 | SSX2 | chrX | 52691896 | 52712178 |
| HG01069 | hp1 | a0001 | c0001 | t0002 | g0007 | AMR | PUR | SSX2_chrX_52691896_52712178 | SSX2 | chrX | 52691896 | 52712178 |
| HG01099 | hp1 | a0001 | c0001 | t0002 | g0007 | AMR | PUR | SSX2_chrX_52691896_52712178 | SSX2 | chrX | 52691896 | 52712178 |
| HG01106 | hp1 | a0001 | c0001 | t0004 | g0035 | AMR | PUR | SSX2_chrX_52691896_52712178 | SSX2 | chrX | 52691896 | 52712178 |
| HG01167 | hp1 | a0001 | c0002 | t0002 | g0025 | AMR | PUR | SSX2_chrX_52691896_52712178 | SSX2 | chrX | 52691896 | 52712178 |
| HG01168 | hp1 | a0001 | c0001 | t0001 | g0057 | AMR | PUR | SSX2_chrX_52691896_52712178 | SSX2 | chrX | 52691896 | 52712178 |
| HG01168 | hp2 | a0001 | c0001 | t0001 | g0060 | AMR | PUR | SSX2_chrX_52691896_52712178 | SSX2 | chrX | 52691896 | 52712178 |
| HG01169 | hp1 | a0001 | c0001 | t0001 | g0030 | AMR | PUR | SSX2_chrX_52691896_52712178 | SSX2 | chrX | 52691896 | 52712178 |
| HG01169 | hp2 | a0001 | c0002 | t0002 | g0016 | AMR | PUR | SSX2_chrX_52691896_52712178 | SSX2 | chrX | 52691896 | 52712178 |
| HG01175 | hp1 | a0001 | c0001 | t0002 | g0014 | AMR | PUR | SSX2_chrX_52691896_52712178 | SSX2 | chrX | 52691896 | 52712178 |
| HG01175 | hp2 | a0001 | c0001 | t0001 | g0059 | AMR | PUR | SSX2_chrX_52691896_52712178 | SSX2 | chrX | 52691896 | 52712178 |
| HG01192 | hp1 | a0001 | c0001 | t0006 | g0006 | AMR | PUR | SSX2_chrX_52691896_52712178 | SSX2 | chrX | 52691896 | 52712178 |
| HG01243 | hp1 | a0001 | c0002 | t0003 | g0019 | AMR | PUR | SSX2_chrX_52691896_52712178 | SSX2 | chrX | 52691896 | 52712178 |
| HG01884 | hp1 | a0001 | c0001 | t0001 | g0050 | AFR | ACB | SSX2_chrX_52691896_52712178 | SSX2 | chrX | 52691896 | 52712178 |
| HG01884 | hp2 | a0001 | c0001 | t0001 | g0049 | AFR | ACB | SSX2_chrX_52691896_52712178 | SSX2 | chrX | 52691896 | 52712178 |
| HG01928 | hp1 | a0001 | c0001 | t0003 | g0002 | AMR | PEL | SSX2_chrX_52691896_52712178 | SSX2 | chrX | 52691896 | 52712178 |
| HG01934 | hp1 | a0001 | c0001 | t0001 | g0017 | AMR | PEL | SSX2_chrX_52691896_52712178 | SSX2 | chrX | 52691896 | 52712178 |
| HG01943 | hp1 | a0001 | c0001 | t0001 | g0001 | AMR | PEL | SSX2_chrX_52691896_52712178 | SSX2 | chrX | 52691896 | 52712178 |
| HG01975 | hp1 | a0001 | c0001 | t0001 | g0001 | AMR | PEL | SSX2_chrX_52691896_52712178 | SSX2 | chrX | 52691896 | 52712178 |
| HG01975 | hp2 | a0001 | c0001 | t0006 | g0034 | AMR | PEL | SSX2_chrX_52691896_52712178 | SSX2 | chrX | 52691896 | 52712178 |
| HG01978 | hp1 | a0001 | c0001 | t0003 | g0002 | AMR | PEL | SSX2_chrX_52691896_52712178 | SSX2 | chrX | 52691896 | 52712178 |
| HG01978 | hp2 | a0001 | c0001 | t0004 | g0004 | AMR | PEL | SSX2_chrX_52691896_52712178 | SSX2 | chrX | 52691896 | 52712178 |
| HG01993 | hp1 | a0001 | c0001 | t0001 | g0001 | AMR | PEL | SSX2_chrX_52691896_52712178 | SSX2 | chrX | 52691896 | 52712178 |
| HG01993 | hp2 | a0001 | c0001 | t0003 | g0002 | AMR | PEL | SSX2_chrX_52691896_52712178 | SSX2 | chrX | 52691896 | 52712178 |
| HG02015 | hp1 | a0001 | c0002 | t0005 | g0054 | EAS | KHV | SSX2_chrX_52691896_52712178 | SSX2 | chrX | 52691896 | 52712178 |
| HG02027 | hp1 | a0001 | c0001 | t0001 | g0044 | EAS | KHV | SSX2_chrX_52691896_52712178 | SSX2 | chrX | 52691896 | 52712178 |
| HG02040 | hp1 | a0001 | c0001 | t0008 | g0041 | EAS | KHV | SSX2_chrX_52691896_52712178 | SSX2 | chrX | 52691896 | 52712178 |
| HG02055 | hp1 | a0001 | c0001 | t0001 | g0029 | AFR | ACB | SSX2_chrX_52691896_52712178 | SSX2 | chrX | 52691896 | 52712178 |
| HG02056 | hp1 | a0001 | c0001 | t0005 | g0045 | EAS | KHV | SSX2_chrX_52691896_52712178 | SSX2 | chrX | 52691896 | 52712178 |
| HG02071 | hp1 | a0001 | c0001 | t0001 | g0005 | EAS | KHV | SSX2_chrX_52691896_52712178 | SSX2 | chrX | 52691896 | 52712178 |
| HG02080 | hp1 | a0001 | c0001 | t0002 | g0003 | EAS | KHV | SSX2_chrX_52691896_52712178 | SSX2 | chrX | 52691896 | 52712178 |
| HG02080 | hp2 | a0001 | c0001 | t0002 | g0003 | EAS | KHV | SSX2_chrX_52691896_52712178 | SSX2 | chrX | 52691896 | 52712178 |
| HG02083 | hp1 | a0001 | c0001 | t0004 | g0004 | EAS | KHV | SSX2_chrX_52691896_52712178 | SSX2 | chrX | 52691896 | 52712178 |
| HG02132 | hp1 | a0001 | c0001 | t0001 | g0005 | EAS | KHV | SSX2_chrX_52691896_52712178 | SSX2 | chrX | 52691896 | 52712178 |
| HG02258 | hp1 | a0001 | c0001 | t0002 | g0042 | AFR | ACB | SSX2_chrX_52691896_52712178 | SSX2 | chrX | 52691896 | 52712178 |
| HG02293 | hp1 | a0001 | c0001 | t0001 | g0001 | AMR | PEL | SSX2_chrX_52691896_52712178 | SSX2 | chrX | 52691896 | 52712178 |
| HG02293 | hp2 | a0001 | c0001 | t0003 | g0002 | AMR | PEL | SSX2_chrX_52691896_52712178 | SSX2 | chrX | 52691896 | 52712178 |
| HG02451 | hp1 | a0001 | c0001 | t0001 | g0001 | AFR | ACB | SSX2_chrX_52691896_52712178 | SSX2 | chrX | 52691896 | 52712178 |
| HG02451 | hp2 | a0001 | c0001 | t0002 | g0007 | AFR | ACB | SSX2_chrX_52691896_52712178 | SSX2 | chrX | 52691896 | 52712178 |
| HG02572 | hp1 | a0001 | c0001 | t0002 | g0026 | AFR | GWD | SSX2_chrX_52691896_52712178 | SSX2 | chrX | 52691896 | 52712178 |
| HG02602 | hp1 | a0001 | c0002 | t0005 | g0022 | SAS | PJL | SSX2_chrX_52691896_52712178 | SSX2 | chrX | 52691896 | 52712178 |
| HG02622 | hp1 | a0001 | c0001 | t0007 | g0052 | AFR | GWD | SSX2_chrX_52691896_52712178 | SSX2 | chrX | 52691896 | 52712178 |
| HG02622 | hp2 | a0001 | c0002 | t0005 | g0024 | AFR | GWD | SSX2_chrX_52691896_52712178 | SSX2 | chrX | 52691896 | 52712178 |
| HG02698 | hp1 | a0001 | c0001 | t0004 | g0004 | SAS | PJL | SSX2_chrX_52691896_52712178 | SSX2 | chrX | 52691896 | 52712178 |
| HG02809 | hp1 | a0001 | c0001 | t0009 | g0013 | AFR | GWD | SSX2_chrX_52691896_52712178 | SSX2 | chrX | 52691896 | 52712178 |
| HG02809 | hp2 | a0001 | c0001 | t0002 | g0053 | AFR | GWD | SSX2_chrX_52691896_52712178 | SSX2 | chrX | 52691896 | 52712178 |
| HG02895 | hp1 | a0001 | c0001 | t0001 | g0018 | AFR | GWD | SSX2_chrX_52691896_52712178 | SSX2 | chrX | 52691896 | 52712178 |
| HG02965 | hp1 | a0001 | c0001 | t0001 | g0001 | AFR | ESN | SSX2_chrX_52691896_52712178 | SSX2 | chrX | 52691896 | 52712178 |
| HG03017 | hp1 | a0001 | c0001 | t0006 | g0006 | SAS | PJL | SSX2_chrX_52691896_52712178 | SSX2 | chrX | 52691896 | 52712178 |
| HG03041 | hp1 | a0001 | c0001 | t0004 | g0010 | AFR | GWD | SSX2_chrX_52691896_52712178 | SSX2 | chrX | 52691896 | 52712178 |
| HG03041 | hp2 | a0001 | c0001 | t0007 | g0051 | AFR | GWD | SSX2_chrX_52691896_52712178 | SSX2 | chrX | 52691896 | 52712178 |
| HG03098 | hp1 | a0001 | c0002 | t0010 | g0055 | AFR | MSL | SSX2_chrX_52691896_52712178 | SSX2 | chrX | 52691896 | 52712178 |
| HG03139 | hp1 | a0001 | c0001 | t0004 | g0010 | AFR | ESN | SSX2_chrX_52691896_52712178 | SSX2 | chrX | 52691896 | 52712178 |
| HG03490 | hp1 | a0001 | c0002 | t0007 | g0023 | SAS | PJL | SSX2_chrX_52691896_52712178 | SSX2 | chrX | 52691896 | 52712178 |
| HG03492 | hp1 | a0001 | c0001 | t0003 | g0008 | SAS | PJL | SSX2_chrX_52691896_52712178 | SSX2 | chrX | 52691896 | 52712178 |
| HG03516 | hp1 | a0001 | c0001 | t0004 | g0040 | AFR | ESN | SSX2_chrX_52691896_52712178 | SSX2 | chrX | 52691896 | 52712178 |
| HG03516 | hp2 | a0001 | c0002 | t0001 | g0056 | AFR | ESN | SSX2_chrX_52691896_52712178 | SSX2 | chrX | 52691896 | 52712178 |
| HG03654 | hp1 | a0001 | c0001 | t0005 | g0036 | SAS | PJL | SSX2_chrX_52691896_52712178 | SSX2 | chrX | 52691896 | 52712178 |
| HG03704 | hp1 | a0001 | c0001 | t0002 | g0014 | SAS | PJL | SSX2_chrX_52691896_52712178 | SSX2 | chrX | 52691896 | 52712178 |
| HG03704 | hp2 | a0001 | c0001 | t0004 | g0058 | SAS | PJL | SSX2_chrX_52691896_52712178 | SSX2 | chrX | 52691896 | 52712178 |
| HG03710 | hp1 | a0001 | c0001 | t0004 | g0027 | SAS | PJL | SSX2_chrX_52691896_52712178 | SSX2 | chrX | 52691896 | 52712178 |
| HG03834 | hp1 | a0001 | c0001 | t0002 | g0003 | SAS | BEB | SSX2_chrX_52691896_52712178 | SSX2 | chrX | 52691896 | 52712178 |
| HG03834 | hp2 | a0001 | c0001 | t0001 | g0032 | SAS | BEB | SSX2_chrX_52691896_52712178 | SSX2 | chrX | 52691896 | 52712178 |
| HG03942 | hp1 | a0001 | c0001 | t0002 | g0003 | SAS | BEB | SSX2_chrX_52691896_52712178 | SSX2 | chrX | 52691896 | 52712178 |
| HG04228 | hp1 | a0001 | c0001 | t0001 | g0005 | SAS | STU | SSX2_chrX_52691896_52712178 | SSX2 | chrX | 52691896 | 52712178 |
| NA18522 | hp1 | a0001 | c0001 | t0011 | g0047 | AFR | YRI | SSX2_chrX_52691896_52712178 | SSX2 | chrX | 52691896 | 52712178 |
| NA18612 | hp1 | a0001 | c0002 | t0001 | g0011 | EAS | CHB | SSX2_chrX_52691896_52712178 | SSX2 | chrX | 52691896 | 52712178 |
| NA18906 | hp1 | a0001 | c0002 | t0003 | g0021 | AFR | YRI | SSX2_chrX_52691896_52712178 | SSX2 | chrX | 52691896 | 52712178 |
| NA18906 | hp2 | a0003 | c0004 | t0008 | g0015 | AFR | YRI | SSX2_chrX_52691896_52712178 | SSX2 | chrX | 52691896 | 52712178 |
| NA18944 | hp1 | a0001 | c0002 | t0001 | g0011 | EAS | JPT | SSX2_chrX_52691896_52712178 | SSX2 | chrX | 52691896 | 52712178 |
| NA18948 | hp1 | a0002 | c0003 | t0001 | g0012 | EAS | JPT | SSX2_chrX_52691896_52712178 | SSX2 | chrX | 52691896 | 52712178 |
| NA18974 | hp1 | a0002 | c0003 | t0001 | g0012 | EAS | JPT | SSX2_chrX_52691896_52712178 | SSX2 | chrX | 52691896 | 52712178 |
| NA18977 | hp1 | a0001 | c0001 | t0002 | g0046 | EAS | JPT | SSX2_chrX_52691896_52712178 | SSX2 | chrX | 52691896 | 52712178 |
| NA18983 | hp1 | a0001 | c0001 | t0002 | g0003 | EAS | JPT | SSX2_chrX_52691896_52712178 | SSX2 | chrX | 52691896 | 52712178 |
| NA18984 | hp1 | a0001 | c0001 | t0012 | g0037 | EAS | JPT | SSX2_chrX_52691896_52712178 | SSX2 | chrX | 52691896 | 52712178 |
| NA18990 | hp1 | a0001 | c0001 | t0007 | g0039 | EAS | JPT | SSX2_chrX_52691896_52712178 | SSX2 | chrX | 52691896 | 52712178 |
| NA18994 | hp1 | a0001 | c0001 | t0004 | g0004 | EAS | JPT | SSX2_chrX_52691896_52712178 | SSX2 | chrX | 52691896 | 52712178 |
| NA19000 | hp1 | a0001 | c0001 | t0003 | g0002 | EAS | JPT | SSX2_chrX_52691896_52712178 | SSX2 | chrX | 52691896 | 52712178 |
| NA19009 | hp1 | a0001 | c0001 | t0001 | g0001 | EAS | JPT | SSX2_chrX_52691896_52712178 | SSX2 | chrX | 52691896 | 52712178 |
| NA19012 | hp1 | a0001 | c0001 | t0003 | g0038 | EAS | JPT | SSX2_chrX_52691896_52712178 | SSX2 | chrX | 52691896 | 52712178 |
| NA19043 | hp1 | a0001 | c0001 | t0003 | g0048 | AFR | LWK | SSX2_chrX_52691896_52712178 | SSX2 | chrX | 52691896 | 52712178 |
| NA19060 | hp1 | a0001 | c0001 | t0003 | g0008 | EAS | JPT | SSX2_chrX_52691896_52712178 | SSX2 | chrX | 52691896 | 52712178 |
| NA19066 | hp1 | a0001 | c0001 | t0001 | g0001 | EAS | JPT | SSX2_chrX_52691896_52712178 | SSX2 | chrX | 52691896 | 52712178 |
| NA19070 | hp1 | a0001 | c0001 | t0003 | g0002 | EAS | JPT | SSX2_chrX_52691896_52712178 | SSX2 | chrX | 52691896 | 52712178 |
| NA19083 | hp1 | a0001 | c0001 | t0001 | g0001 | EAS | JPT | SSX2_chrX_52691896_52712178 | SSX2 | chrX | 52691896 | 52712178 |
| NA19091 | hp1 | a0001 | c0001 | t0001 | g0031 | EAS | JPT | SSX2_chrX_52691896_52712178 | SSX2 | chrX | 52691896 | 52712178 |
| NA20905 | hp1 | a0001 | c0001 | t0005 | g0009 | SAS | GIH | SSX2_chrX_52691896_52712178 | SSX2 | chrX | 52691896 | 52712178 |
| HG03471 | hp1 | a0001 | c0001 | t0005 | g0061 | AFR | MSL | SSX2_chrX_52691896_52712178 | SSX2 | chrX | 52691896 | 52712178 |
| view | chr:pos | ref | alt | # # of ahapid:amino-acid(protein) level |
ahapids | # # of haplotypeids |
haplotypeids | annotation | impact | hgvs_c | hgvs_p | genename | geneid | featuretype | featureid | transcript_biotype | rank | cdna cdna pos length |
cds cds pos length |
aa aa pos length |
distance | status | chr | pos |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| chrX:52698079 | C | G | 1 | a0002 | 2 | NA18948.hp1 NA18974.hp1 |
missense_variant | MODERATE | c.476G>C | p.Arg159Thr | SSX2 | ENSG00000241476.9 | transcript | ENST00000337502.6 | protein_coding | 7/8 | 563/1281 | 476/567 | 159/188 | chrX | 52698079 | |||
| chrX:52705690 | C | G | 1 | a0003 | 1 | NA18906.hp2 | missense_variant | MODERATE | c.60G>C | p.Lys20Asn | SSX2 | ENSG00000241476.9 | transcript | ENST00000337502.6 | protein_coding | 2/8 | 147/1281 | 60/567 | 20/188 | chrX | 52705690 |
| view | chr:pos | ref | alt | # # of chapid |
chapids | # # of haplotypeids |
haplotypeids | annotation | impact | hgvs_c | hgvs_p | genename | geneid | featuretype | featureid | transcript_biotype | rank | cdna cdna pos length |
cds cds pos length |
aa aa pos length |
distance | status | chr | pos |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| chrX:52705183 | C | T | 2 | a0001c0002 a0003c0004 |
14 | HG00099.hp1 HG01167.hp1 HG01169.hp2 others(11): Show |
synonymous_variant | LOW | c.129G>A | p.Ser43Ser | SSX2 | ENSG00000241476.9 | transcript | ENST00000337502.6 | protein_coding | 3/8 | 216/1281 | 129/567 | 43/188 | chrX | 52705183 |
| view | chr:pos | ref | alt | # # of thapid:transcript level |
thapids | # # of haplotypeids |
haplotypeids | annotation | impact | hgvs_c | hgvs_p | genename | geneid | featuretype | featureid | transcript_biotype | rank | cdna cdna pos length |
cds cds pos length |
aa aa pos length |
distance | status | chr | pos |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| chrX:52697047 | G | GGT | 2 | a0001c0001t0002 a0001c0002t0002 |
16 | HG01069.hp1 HG01099.hp1 HG01167.hp1 others(13): Show |
3_prime_UTR_variant | MODIFIER | c.*474_*475dupAC | SSX2 | ENSG00000241476.9 | transcript | ENST00000337502.6 | protein_coding | 8/8 | 940 | chrX | 52697047 | ||||||
| chrX:52697047 | G | GGTGT | 3 | a0001c0001t0001 a0001c0002t0001 a0002c0003t0001 |
30 | HG00741.hp1 HG01168.hp1 HG01168.hp2 others(27): Show |
3_prime_UTR_variant | MODIFIER | c.*472_*475dupACAC | SSX2 | ENSG00000241476.9 | transcript | ENST00000337502.6 | protein_coding | 8/8 | 940 | chrX | 52697047 | ||||||
| chrX:52697047 | G | GGTGTGT | 2 | a0001c0001t0004 a0001c0002t0004 |
12 | HG00099.hp1 HG00099.hp2 HG01106.hp1 others(9): Show |
3_prime_UTR_variant | MODIFIER | c.*470_*475dupACACAC | SSX2 | ENSG00000241476.9 | transcript | ENST00000337502.6 | protein_coding | 8/8 | 940 | chrX | 52697047 | ||||||
| chrX:52697047 | G | GGTGTGTG others(1): Show |
2 | a0001c0001t0006 a0001c0001t0012 |
5 | HG00741.hp2 HG01192.hp1 HG01975.hp2 others(2): Show |
3_prime_UTR_variant | MODIFIER | c.*468_*475dupACACAC others(2): Show |
SSX2 | ENSG00000241476.9 | transcript | ENST00000337502.6 | protein_coding | 8/8 | 940 | chrX | 52697047 | ||||||
| chrX:52697047 | G | GTGT | 1 | a0001c0001t0009 | 2 | HG00408.hp2 HG02809.hp1 |
3_prime_UTR_variant | MODIFIER | c.*475_*476insACA | SSX2 | ENSG00000241476.9 | transcript | ENST00000337502.6 | protein_coding | 8/8 | 940 | chrX | 52697047 | ||||||
| chrX:52697047 | GGT | G | 2 | a0001c0001t0005 a0001c0002t0005 |
9 | HG00408.hp1 HG00438.hp1 HG02015.hp1 others(6): Show |
3_prime_UTR_variant | MODIFIER | c.*474_*475delAC | SSX2 | ENSG00000241476.9 | transcript | ENST00000337502.6 | protein_coding | 8/8 | 939 | chrX | 52697047 | ||||||
| chrX:52697047 | GGTGT | G | 2 | a0001c0001t0007 a0001c0002t0007 |
4 | HG02622.hp1 HG03041.hp2 HG03490.hp1 others(1): Show |
3_prime_UTR_variant | MODIFIER | c.*472_*475delACAC | SSX2 | ENSG00000241476.9 | transcript | ENST00000337502.6 | protein_coding | 8/8 | 937 | chrX | 52697047 | ||||||
| chrX:52697047 | GGTGTGT | G | 2 | a0001c0001t0010 a0001c0002t0010 |
2 | HG00438.hp2 HG03098.hp1 |
3_prime_UTR_variant | MODIFIER | c.*470_*475delACACAC | SSX2 | ENSG00000241476.9 | transcript | ENST00000337502.6 | protein_coding | 8/8 | 935 | chrX | 52697047 | ||||||
| chrX:52697090 | G | GTGTGT | 2 | a0001c0001t0008 a0003c0004t0008 |
2 | HG02040.hp1 NA18906.hp2 |
3_prime_UTR_variant | MODIFIER | c.*432_*433insACACA | SSX2 | ENSG00000241476.9 | transcript | ENST00000337502.6 | protein_coding | 8/8 | 897 | chrX | 52697090 | ||||||
| chrX:52697132 | A | G | 1 | a0001c0001t0011 | 1 | NA18522.hp1 | 3_prime_UTR_variant | MODIFIER | c.*391T>C | SSX2 | ENSG00000241476.9 | transcript | ENST00000337502.6 | protein_coding | 8/8 | 856 | chrX | 52697132 | ||||||
| chrX:52697235 | G | A | 1 | a0001c0001t0012 | 1 | NA18984.hp1 | 3_prime_UTR_variant | MODIFIER | c.*288C>T | SSX2 | ENSG00000241476.9 | transcript | ENST00000337502.6 | protein_coding | 8/8 | 753 | chrX | 52697235 |
| view | chr:pos | ref | alt | # # of ghapid:genebody level |
ghapids | # # of haplotypeids |
haplotypeids | annotation | impact | hgvs_c | hgvs_p | genename | geneid | featuretype | featureid | genebody_biotype | rank | cdna cdna pos length |
cds cds pos length |
aa aa pos length |
distance | status | chr | pos |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| chrX:52697533 | G | C | 1 | a0001c0002t0005g0024 | 1 | HG02622.hp2 | intron_variant | MODIFIER | c.*5-15C>G | SSX2 | ENSG00000241476.9 | transcript | ENST00000337502.6 | protein_coding | 7/7 | chrX | 52697533 | |||||||
| chrX:52698512 | G | T | 1 | a0001c0001t0002g0046 | 1 | NA18977.hp1 | intron_variant | MODIFIER | c.467-424C>A | SSX2 | ENSG00000241476.9 | transcript | ENST00000337502.6 | protein_coding | 6/7 | chrX | 52698512 | |||||||
| chrX:52698513 | T | G | 1 | a0001c0001t0002g0046 | 1 | NA18977.hp1 | intron_variant | MODIFIER | c.467-425A>C | SSX2 | ENSG00000241476.9 | transcript | ENST00000337502.6 | protein_coding | 6/7 | chrX | 52698513 | |||||||
| chrX:52698544 | T | C | 2 | a0001c0001t0003g0048 a0001c0001t0011g0047 |
2 | NA18522.hp1 NA19043.hp1 |
intron_variant | MODIFIER | c.467-456A>G | SSX2 | ENSG00000241476.9 | transcript | ENST00000337502.6 | protein_coding | 6/7 | chrX | 52698544 | |||||||
| chrX:52698716 | T | C | 1 | a0001c0001t0004g0027 | 1 | HG03710.hp1 | intron_variant | MODIFIER | c.467-628A>G | SSX2 | ENSG00000241476.9 | transcript | ENST00000337502.6 | protein_coding | 6/7 | chrX | 52698716 | |||||||
| chrX:52698857 | T | A | 1 | a0001c0001t0007g0052 | 1 | HG02622.hp1 | intron_variant | MODIFIER | c.467-769A>T | SSX2 | ENSG00000241476.9 | transcript | ENST00000337502.6 | protein_coding | 6/7 | chrX | 52698857 | |||||||
| chrX:52698878 | T | C | 11 | a0001c0001t0001g0005 a0001c0001t0001g0031 a0001c0001t0002g0003 others(8): Show |
26 | HG00280.hp1 HG00408.hp1 HG00438.hp1 others(23): Show |
intron_variant | MODIFIER | c.467-790A>G | SSX2 | ENSG00000241476.9 | transcript | ENST00000337502.6 | protein_coding | 6/7 | chrX | 52698878 | |||||||
| chrX:52699136 | A | G | 2 | a0001c0001t0001g0049 a0001c0001t0001g0050 |
2 | HG01884.hp1 HG01884.hp2 |
intron_variant | MODIFIER | c.467-1048T>C | SSX2 | ENSG00000241476.9 | transcript | ENST00000337502.6 | protein_coding | 6/7 | chrX | 52699136 | |||||||
| chrX:52699465 | T | C | 1 | a0001c0001t0005g0061 | 1 | HG03471.hp1 | intron_variant | MODIFIER | c.466+978A>G | SSX2 | ENSG00000241476.9 | transcript | ENST00000337502.6 | protein_coding | 6/7 | chrX | 52699465 | |||||||
| chrX:52699877 | G | C | 1 | a0001c0002t0010g0055 | 1 | HG03098.hp1 | intron_variant | MODIFIER | c.466+566C>G | SSX2 | ENSG00000241476.9 | transcript | ENST00000337502.6 | protein_coding | 6/7 | chrX | 52699877 | |||||||
| chrX:52700121 | T | G | 1 | a0001c0001t0005g0036 | 1 | HG03654.hp1 | intron_variant | MODIFIER | c.466+322A>C | SSX2 | ENSG00000241476.9 | transcript | ENST00000337502.6 | protein_coding | 6/7 | chrX | 52700121 | |||||||
| chrX:52700200 | C | T | 1 | a0001c0001t0001g0032 | 1 | HG03834.hp2 | intron_variant | MODIFIER | c.466+243G>A | SSX2 | ENSG00000241476.9 | transcript | ENST00000337502.6 | protein_coding | 6/7 | chrX | 52700200 | |||||||
| chrX:52700944 | C | T | 1 | a0001c0001t0001g0018 | 1 | HG02895.hp1 | intron_variant | MODIFIER | c.331-366G>A | SSX2 | ENSG00000241476.9 | transcript | ENST00000337502.6 | protein_coding | 5/7 | chrX | 52700944 | |||||||
| chrX:52701223 | TTTTTTTT others(13): Show |
T | 1 | a0001c0001t0001g0031 | 1 | NA19091.hp1 | intron_variant | MODIFIER | c.331-665_331-646del others(20): Show |
SSX2 | ENSG00000241476.9 | transcript | ENST00000337502.6 | protein_coding | 5/7 | chrX | 52701223 | |||||||
| chrX:52701224 | TTTTTTTC others(12): Show |
T | 1 | a0001c0001t0003g0002 | 1 | NA19000.hp1 | intron_variant | MODIFIER | c.331-665_331-647del others(19): Show |
SSX2 | ENSG00000241476.9 | transcript | ENST00000337502.6 | protein_coding | 5/7 | chrX | 52701224 | |||||||
| chrX:52701243 | C | CT | 38 | a0001c0001t0001g0001 a0001c0001t0001g0005 a0001c0001t0001g0017 others(35): Show |
62 | HG00099.hp1 HG00099.hp2 HG00280.hp1 others(59): Show |
intron_variant | MODIFIER | c.331-666dupA | SSX2 | ENSG00000241476.9 | transcript | ENST00000337502.6 | protein_coding | 5/7 | chrX | 52701243 | |||||||
| chrX:52701243 | C | CTT | 7 | a0001c0001t0001g0029 a0001c0001t0001g0030 a0001c0001t0003g0002 others(4): Show |
7 | HG01106.hp1 HG01169.hp1 HG01978.hp1 others(4): Show |
intron_variant | MODIFIER | c.331-667_331-666dup others(2): Show |
SSX2 | ENSG00000241476.9 | transcript | ENST00000337502.6 | protein_coding | 5/7 | chrX | 52701243 | |||||||
| chrX:52701243 | CTT | C | 5 | a0001c0001t0001g0057 a0001c0001t0001g0059 a0001c0001t0001g0060 others(2): Show |
6 | HG01168.hp1 HG01168.hp2 HG01175.hp1 others(3): Show |
intron_variant | MODIFIER | c.331-667_331-666del others(2): Show |
SSX2 | ENSG00000241476.9 | transcript | ENST00000337502.6 | protein_coding | 5/7 | chrX | 52701243 | |||||||
| chrX:52701247 | T | C | 2 | a0001c0001t0002g0042 a0001c0001t0002g0053 |
2 | HG02258.hp1 HG02809.hp2 |
intron_variant | MODIFIER | c.331-669A>G | SSX2 | ENSG00000241476.9 | transcript | ENST00000337502.6 | protein_coding | 5/7 | chrX | 52701247 | |||||||
| chrX:52701248 | T | C | 2 | a0001c0001t0003g0048 a0001c0001t0011g0047 |
2 | NA18522.hp1 NA19043.hp1 |
intron_variant | MODIFIER | c.331-670A>G | SSX2 | ENSG00000241476.9 | transcript | ENST00000337502.6 | protein_coding | 5/7 | chrX | 52701248 | |||||||
| chrX:52701249 | T | C | 3 | a0001c0001t0007g0051 a0001c0001t0007g0052 a0001c0002t0005g0024 |
3 | HG02622.hp1 HG02622.hp2 HG03041.hp2 |
intron_variant | MODIFIER | c.331-671A>G | SSX2 | ENSG00000241476.9 | transcript | ENST00000337502.6 | protein_coding | 5/7 | chrX | 52701249 | |||||||
| chrX:52701461 | A | G | 4 | a0001c0001t0001g0057 a0001c0001t0001g0059 a0001c0001t0004g0058 others(1): Show |
4 | HG01168.hp1 HG01175.hp2 HG03471.hp1 others(1): Show |
intron_variant | MODIFIER | c.331-883T>C | SSX2 | ENSG00000241476.9 | transcript | ENST00000337502.6 | protein_coding | 5/7 | chrX | 52701461 | |||||||
| chrX:52701545 | C | G | 1 | a0001c0002t0002g0016 | 1 | HG01169.hp2 | intron_variant | MODIFIER | c.331-967G>C | SSX2 | ENSG00000241476.9 | transcript | ENST00000337502.6 | protein_coding | 5/7 | chrX | 52701545 | |||||||
| chrX:52701546 | G | C | 1 | a0001c0002t0002g0016 | 1 | HG01169.hp2 | intron_variant | MODIFIER | c.331-968C>G | SSX2 | ENSG00000241476.9 | transcript | ENST00000337502.6 | protein_coding | 5/7 | chrX | 52701546 | |||||||
| chrX:52701657 | C | A | 15 | a0001c0001t0001g0049 a0001c0001t0001g0050 a0001c0001t0001g0057 others(12): Show |
16 | HG01168.hp1 HG01168.hp2 HG01175.hp1 others(13): Show |
intron_variant | MODIFIER | c.330+924G>T | SSX2 | ENSG00000241476.9 | transcript | ENST00000337502.6 | protein_coding | 5/7 | chrX | 52701657 | |||||||
| chrX:52701658 | G | A | 1 | a0001c0001t0012g0037 | 1 | NA18984.hp1 | intron_variant | MODIFIER | c.330+923C>T | SSX2 | ENSG00000241476.9 | transcript | ENST00000337502.6 | protein_coding | 5/7 | chrX | 52701658 | |||||||
| chrX:52702416 | G | A | 1 | a0001c0001t0005g0061 | 1 | HG03471.hp1 | intron_variant | MODIFIER | c.330+165C>T | SSX2 | ENSG00000241476.9 | transcript | ENST00000337502.6 | protein_coding | 5/7 | chrX | 52702416 | |||||||
| chrX:52702735 | A | G | 56 | a0001c0001t0001g0001 a0001c0001t0001g0005 a0001c0001t0001g0017 others(53): Show |
92 | HG00099.hp1 HG00099.hp2 HG00280.hp1 others(89): Show |
intron_variant | MODIFIER | c.281-105T>C | SSX2 | ENSG00000241476.9 | transcript | ENST00000337502.6 | protein_coding | 4/7 | chrX | 52702735 | |||||||
| chrX:52702740 | T | C | 2 | a0001c0001t0007g0051 a0001c0001t0007g0052 |
2 | HG02622.hp1 HG03041.hp2 |
intron_variant | MODIFIER | c.281-110A>G | SSX2 | ENSG00000241476.9 | transcript | ENST00000337502.6 | protein_coding | 4/7 | chrX | 52702740 | |||||||
| chrX:52703004 | A | G | 3 | a0001c0001t0001g0049 a0001c0001t0007g0051 a0001c0001t0007g0052 |
3 | HG01884.hp2 HG02622.hp1 HG03041.hp2 |
intron_variant | MODIFIER | c.281-374T>C | SSX2 | ENSG00000241476.9 | transcript | ENST00000337502.6 | protein_coding | 4/7 | chrX | 52703004 | |||||||
| chrX:52703035 | C | T | 2 | a0001c0001t0001g0060 a0001c0001t0002g0014 |
3 | HG01168.hp2 HG01175.hp1 HG03704.hp1 |
intron_variant | MODIFIER | c.281-405G>A | SSX2 | ENSG00000241476.9 | transcript | ENST00000337502.6 | protein_coding | 4/7 | chrX | 52703035 | |||||||
| chrX:52703189 | A | ATGTTTAG | 39 | a0001c0001t0001g0001 a0001c0001t0001g0005 a0001c0001t0001g0017 others(36): Show |
74 | HG00099.hp2 HG00280.hp1 HG00408.hp1 others(71): Show |
intron_variant | MODIFIER | c.281-560_281-559ins others(7): Show |
SSX2 | ENSG00000241476.9 | transcript | ENST00000337502.6 | protein_coding | 4/7 | chrX | 52703189 | |||||||
| chrX:52703191 | A | T | 39 | a0001c0001t0001g0001 a0001c0001t0001g0005 a0001c0001t0001g0017 others(36): Show |
74 | HG00099.hp2 HG00280.hp1 HG00408.hp1 others(71): Show |
intron_variant | MODIFIER | c.281-561T>A | SSX2 | ENSG00000241476.9 | transcript | ENST00000337502.6 | protein_coding | 4/7 | chrX | 52703191 | |||||||
| chrX:52703274 | C | A | 1 | a0001c0001t0001g0049 | 1 | HG01884.hp2 | intron_variant | MODIFIER | c.281-644G>T | SSX2 | ENSG00000241476.9 | transcript | ENST00000337502.6 | protein_coding | 4/7 | chrX | 52703274 | |||||||
| chrX:52703320 | A | G | 42 | a0001c0001t0001g0001 a0001c0001t0001g0005 a0001c0001t0001g0017 others(39): Show |
77 | HG00099.hp2 HG00280.hp1 HG00408.hp1 others(74): Show |
intron_variant | MODIFIER | c.281-690T>C | SSX2 | ENSG00000241476.9 | transcript | ENST00000337502.6 | protein_coding | 4/7 | chrX | 52703320 | |||||||
| chrX:52703604 | ACTTT | A | 2 | a0001c0001t0001g0050 a0001c0002t0005g0024 |
2 | HG01884.hp1 HG02622.hp2 |
intron_variant | MODIFIER | c.280+889_280+892del others(4): Show |
SSX2 | ENSG00000241476.9 | transcript | ENST00000337502.6 | protein_coding | 4/7 | chrX | 52703604 | |||||||
| chrX:52703621 | C | CT | 4 | a0001c0001t0001g0018 a0001c0001t0005g0061 a0001c0002t0001g0011 others(1): Show |
4 | HG01169.hp2 HG02895.hp1 HG03471.hp1 others(1): Show |
intron_variant | MODIFIER | c.280+875dupA | SSX2 | ENSG00000241476.9 | transcript | ENST00000337502.6 | protein_coding | 4/7 | chrX | 52703621 | |||||||
| chrX:52703621 | C | CTT | 38 | a0001c0001t0001g0001 a0001c0001t0001g0005 a0001c0001t0001g0017 others(35): Show |
70 | HG00099.hp2 HG00280.hp1 HG00408.hp1 others(67): Show |
intron_variant | MODIFIER | c.280+874_280+875dup others(2): Show |
SSX2 | ENSG00000241476.9 | transcript | ENST00000337502.6 | protein_coding | 4/7 | chrX | 52703621 | |||||||
| chrX:52703624 | T | TC | 3 | a0001c0001t0001g0057 a0001c0001t0001g0059 a0001c0001t0004g0058 |
3 | HG01168.hp1 HG01175.hp2 HG03704.hp2 |
intron_variant | MODIFIER | c.280+872_280+873ins others(1): Show |
SSX2 | ENSG00000241476.9 | transcript | ENST00000337502.6 | protein_coding | 4/7 | chrX | 52703624 | |||||||
| chrX:52703625 | T | C | 1 | a0001c0002t0005g0054 | 1 | HG02015.hp1 | intron_variant | MODIFIER | c.280+872A>G | SSX2 | ENSG00000241476.9 | transcript | ENST00000337502.6 | protein_coding | 4/7 | chrX | 52703625 | |||||||
| chrX:52703907 | A | C | 1 | a0001c0001t0001g0030 | 1 | HG01169.hp1 | intron_variant | MODIFIER | c.280+590T>G | SSX2 | ENSG00000241476.9 | transcript | ENST00000337502.6 | protein_coding | 4/7 | chrX | 52703907 | |||||||
| chrX:52703986 | T | A | 1 | a0001c0001t0004g0040 | 1 | HG03516.hp1 | intron_variant | MODIFIER | c.280+511A>T | SSX2 | ENSG00000241476.9 | transcript | ENST00000337502.6 | protein_coding | 4/7 | chrX | 52703986 | |||||||
| chrX:52704188 | T | G | 4 | a0001c0001t0002g0042 a0001c0001t0002g0053 a0001c0001t0007g0051 others(1): Show |
4 | HG02258.hp1 HG02622.hp1 HG02809.hp2 others(1): Show |
intron_variant | MODIFIER | c.280+309A>C | SSX2 | ENSG00000241476.9 | transcript | ENST00000337502.6 | protein_coding | 4/7 | chrX | 52704188 | |||||||
| chrX:52704365 | A | AT | 5 | a0001c0001t0001g0029 a0001c0001t0004g0010 a0001c0002t0003g0019 others(2): Show |
6 | HG01243.hp1 HG02055.hp1 HG03041.hp1 others(3): Show |
intron_variant | MODIFIER | c.280+131dupA | SSX2 | ENSG00000241476.9 | transcript | ENST00000337502.6 | protein_coding | 4/7 | chrX | 52704365 | |||||||
| chrX:52704365 | AT | A | 11 | a0001c0001t0001g0018 a0001c0001t0001g0049 a0001c0001t0001g0050 others(8): Show |
12 | HG01168.hp2 HG01175.hp1 HG01884.hp1 others(9): Show |
intron_variant | MODIFIER | c.280+131delA | SSX2 | ENSG00000241476.9 | transcript | ENST00000337502.6 | protein_coding | 4/7 | chrX | 52704365 | |||||||
| chrX:52704683 | A | G | 1 | a0001c0001t0003g0028 | 1 | HG00609.hp1 | intron_variant | MODIFIER | c.185-91T>C | SSX2 | ENSG00000241476.9 | transcript | ENST00000337502.6 | protein_coding | 3/7 | chrX | 52704683 | |||||||
| chrX:52704779 | C | CA | 17 | a0001c0001t0001g0017 a0001c0001t0001g0018 a0001c0001t0001g0044 others(14): Show |
19 | HG00099.hp2 HG01168.hp2 HG01175.hp1 others(16): Show |
intron_variant | MODIFIER | c.185-188dupT | SSX2 | ENSG00000241476.9 | transcript | ENST00000337502.6 | protein_coding | 3/7 | chrX | 52704779 | |||||||
| chrX:52704779 | CA | C | 5 | a0001c0001t0001g0059 a0001c0001t0002g0026 a0001c0001t0004g0027 others(2): Show |
5 | HG01175.hp2 HG02572.hp1 HG02622.hp2 others(2): Show |
intron_variant | MODIFIER | c.185-188delT | SSX2 | ENSG00000241476.9 | transcript | ENST00000337502.6 | protein_coding | 3/7 | chrX | 52704779 | |||||||
| chrX:52704779 | CAA | C | 11 | a0001c0001t0001g0057 a0001c0002t0001g0011 a0001c0002t0001g0056 others(8): Show |
12 | HG00099.hp1 HG01168.hp1 HG01243.hp1 others(9): Show |
intron_variant | MODIFIER | c.185-189_185-188del others(2): Show |
SSX2 | ENSG00000241476.9 | transcript | ENST00000337502.6 | protein_coding | 3/7 | chrX | 52704779 | |||||||
| chrX:52705246 | CA | C | 4 | a0001c0001t0001g0017 a0001c0001t0001g0018 a0001c0001t0004g0010 others(1): Show |
5 | HG01169.hp2 HG01934.hp1 HG02895.hp1 others(2): Show |
splice_region_variant&intron_variant | LOW | c.70-5delT | SSX2 | ENSG00000241476.9 | transcript | ENST00000337502.6 | protein_coding | 2/7 | chrX | 52705246 | |||||||
| chrX:52705605 | T | C | 1 | a0001c0002t0005g0054 | 1 | HG02015.hp1 | intron_variant | MODIFIER | c.69+76A>G | SSX2 | ENSG00000241476.9 | transcript | ENST00000337502.6 | protein_coding | 2/7 | chrX | 52705605 | |||||||
| chrX:52705831 | G | A | 2 | a0001c0002t0001g0056 a0001c0002t0010g0055 |
2 | HG03098.hp1 HG03516.hp2 |
intron_variant | MODIFIER | c.-20-62C>T | SSX2 | ENSG00000241476.9 | transcript | ENST00000337502.6 | protein_coding | 1/7 | chrX | 52705831 | |||||||
| chrX:52706681 | C | T | 3 | a0001c0001t0001g0057 a0001c0001t0001g0059 a0001c0001t0004g0058 |
3 | HG01168.hp1 HG01175.hp2 HG03704.hp2 |
intron_variant | MODIFIER | c.-21+431G>A | SSX2 | ENSG00000241476.9 | transcript | ENST00000337502.6 | protein_coding | 1/7 | chrX | 52706681 | |||||||
| chrX:52707099 | G | A | 6 | a0001c0001t0001g0057 a0001c0001t0001g0059 a0001c0001t0001g0060 others(3): Show |
7 | HG01168.hp1 HG01168.hp2 HG01175.hp1 others(4): Show |
intron_variant | MODIFIER | c.-21+13C>T | SSX2 | ENSG00000241476.9 | transcript | ENST00000337502.6 | protein_coding | 1/7 | chrX | 52707099 |