JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SSX4B_chrX_48397082_48416960	0/0	t0008	712	1	0	1	0	0	0	copy fasta	SSX4B	chrX	48397082	48416960
SSX4B_chrX_48397082_48416960	0/0	t0009	712	1	0	1	0	0	0	copy fasta	SSX4B	chrX	48397082	48416960
SSX4_chrX_48378539_48398347	0/0	t0001	643	54	11	10	23	1	9	copy fasta	SSX4	chrX	48378539	48398347
SSX4_chrX_48378539_48398347	0/0	t0002	643	40	15	7	10	3	5	copy fasta	SSX4	chrX	48378539	48398347
SSX4_chrX_48378539_48398347	0/0	t0003	643	4	4	0	0	0	0	copy fasta	SSX4	chrX	48378539	48398347
SSX4_chrX_48378539_48398347	0/0	t0004	643	2	0	0	2	0	0	copy fasta	SSX4	chrX	48378539	48398347
SSX4_chrX_48378539_48398347	0/0	t0005	643	2	2	0	0	0	0	copy fasta	SSX4	chrX	48378539	48398347
SSX4_chrX_48378539_48398347	0/0	t0006	643	1	0	0	0	0	1	copy fasta	SSX4	chrX	48378539	48398347
SSX4_chrX_48378539_48398347	0/0	t0007	643	1	0	1	0	0	0	copy fasta	SSX4	chrX	48378539	48398347
SSX5_chrX_48181220_48201795	0/1	t0001	725	139	11	35	73	3	16	copy fasta	SSX5	chrX	48181220	48201795
SSX5_chrX_48181220_48201795	0/0	t0002	727	45	9	3	28	3	2	copy fasta	SSX5	chrX	48181220	48201795
SSX5_chrX_48181220_48201795	0/0	t0003	725	19	0	1	15	1	2	copy fasta	SSX5	chrX	48181220	48201795
SSX5_chrX_48181220_48201795	1/0	t0004	727	13	9	3	0	0	0	copy fasta	SSX5	chrX	48181220	48201795
SSX5_chrX_48181220_48201795	0/0	t0005	719	11	0	2	9	0	0	copy fasta	SSX5	chrX	48181220	48201795
SSX5_chrX_48181220_48201795	0/0	t0006	729	11	2	3	5	0	1	copy fasta	SSX5	chrX	48181220	48201795
SSX5_chrX_48181220_48201795	0/0	t0007	727	9	1	2	4	0	2	copy fasta	SSX5	chrX	48181220	48201795
SSX5_chrX_48181220_48201795	0/0	t0008	725	9	1	2	3	2	1	copy fasta	SSX5	chrX	48181220	48201795
SSX5_chrX_48181220_48201795	0/0	t0009	723	6	6	0	0	0	0	copy fasta	SSX5	chrX	48181220	48201795
SSX5_chrX_48181220_48201795	0/0	t0010	727	5	5	0	0	0	0	copy fasta	SSX5	chrX	48181220	48201795
SSX5_chrX_48181220_48201795	0/0	t0011	721	5	4	0	0	0	1	copy fasta	SSX5	chrX	48181220	48201795
SSX5_chrX_48181220_48201795	0/0	t0012	723	5	5	0	0	0	0	copy fasta	SSX5	chrX	48181220	48201795
SSX5_chrX_48181220_48201795	0/0	t0013	725	4	3	1	0	0	0	copy fasta	SSX5	chrX	48181220	48201795
SSX5_chrX_48181220_48201795	0/0	t0014	719	3	0	0	3	0	0	copy fasta	SSX5	chrX	48181220	48201795
SSX5_chrX_48181220_48201795	0/0	t0015	727	3	0	0	3	0	0	copy fasta	SSX5	chrX	48181220	48201795
SSX5_chrX_48181220_48201795	0/0	t0016	731	3	0	1	0	0	2	copy fasta	SSX5	chrX	48181220	48201795
SSX5_chrX_48181220_48201795	0/0	t0017	729	2	2	0	0	0	0	copy fasta	SSX5	chrX	48181220	48201795
SSX5_chrX_48181220_48201795	0/0	t0018	725	2	2	0	0	0	0	copy fasta	SSX5	chrX	48181220	48201795
SSX5_chrX_48181220_48201795	0/0	t0019	723	2	0	0	2	0	0	copy fasta	SSX5	chrX	48181220	48201795
SSX5_chrX_48181220_48201795	0/0	t0020	726	2	0	1	1	0	0	copy fasta	SSX5	chrX	48181220	48201795
SSX5_chrX_48181220_48201795	0/0	t0021	731	2	0	2	0	0	0	copy fasta	SSX5	chrX	48181220	48201795
SSX5_chrX_48181220_48201795	0/0	t0022	729	2	2	0	0	0	0	copy fasta	SSX5	chrX	48181220	48201795
SSX5_chrX_48181220_48201795	0/0	t0023	723	1	1	0	0	0	0	copy fasta	SSX5	chrX	48181220	48201795
SSX5_chrX_48181220_48201795	0/0	t0024	729	1	0	1	0	0	0	copy fasta	SSX5	chrX	48181220	48201795
SSX5_chrX_48181220_48201795	0/0	t0025	727	1	1	0	0	0	0	copy fasta	SSX5	chrX	48181220	48201795
SSX5_chrX_48181220_48201795	0/0	t0026	723	1	1	0	0	0	0	copy fasta	SSX5	chrX	48181220	48201795
SSX5_chrX_48181220_48201795	0/0	t0027	725	1	0	0	1	0	0	copy fasta	SSX5	chrX	48181220	48201795
SSX5_chrX_48181220_48201795	0/0	t0028	715	1	0	0	1	0	0	copy fasta	SSX5	chrX	48181220	48201795
SSX5_chrX_48181220_48201795	0/0	t0029	723	1	0	0	1	0	0	copy fasta	SSX5	chrX	48181220	48201795
SSX5_chrX_48181220_48201795	0/0	t0030	721	1	0	0	1	0	0	copy fasta	SSX5	chrX	48181220	48201795
SSX5_chrX_48181220_48201795	0/0	t0031	721	1	0	1	0	0	0	copy fasta	SSX5	chrX	48181220	48201795
SSX5_chrX_48181220_48201795	0/0	t0032	725	1	1	0	0	0	0	copy fasta	SSX5	chrX	48181220	48201795
SSX5_chrX_48181220_48201795	0/0	t0033	733	1	0	0	0	0	1	copy fasta	SSX5	chrX	48181220	48201795
SSX5_chrX_48181220_48201795	0/0	t0034	729	1	0	0	0	0	1	copy fasta	SSX5	chrX	48181220	48201795
SSX5_chrX_48181220_48201795	0/0	t0035	733	1	0	1	0	0	0	copy fasta	SSX5	chrX	48181220	48201795
SSX5_chrX_48181220_48201795	0/0	t0036	727	1	0	0	0	0	1	copy fasta	SSX5	chrX	48181220	48201795
SSX5_chrX_48181220_48201795	0/0	t0037	731	1	0	0	1	0	0	copy fasta	SSX5	chrX	48181220	48201795
SSX5_chrX_48181220_48201795	0/0	t0038	726	1	0	0	1	0	0	copy fasta	SSX5	chrX	48181220	48201795
SSX5_chrX_48181220_48201795	0/0	t0039	727	1	1	0	0	0	0	copy fasta	SSX5	chrX	48181220	48201795
SSX5_chrX_48181220_48201795	0/0	t0040	721	1	0	0	1	0	0	copy fasta	SSX5	chrX	48181220	48201795
SSX5_chrX_48181220_48201795	0/0	t0041	725	1	0	0	0	0	1	copy fasta	SSX5	chrX	48181220	48201795