JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
STAC_chr3_36375504_36553007	0/0	t0007	1859	3	3	0	0	0	0	copy fasta	STAC	chr3	36375504	36553007
STAC_chr3_36375504_36553007	0/0	t0008	1858	2	0	2	0	0	0	copy fasta	STAC	chr3	36375504	36553007
STAC_chr3_36375504_36553007	0/0	t0009	1859	1	0	1	0	0	0	copy fasta	STAC	chr3	36375504	36553007
STAC_chr3_36375504_36553007	0/0	t0010	1859	1	1	0	0	0	0	copy fasta	STAC	chr3	36375504	36553007
STAC_chr3_36375504_36553007	0/0	t0011	1859	1	0	1	0	0	0	copy fasta	STAC	chr3	36375504	36553007
STAC_chr3_36375504_36553007	0/0	t0012	1859	1	0	0	1	0	0	copy fasta	STAC	chr3	36375504	36553007
STAC_chr3_36375504_36553007	0/0	t0013	1858	1	0	1	0	0	0	copy fasta	STAC	chr3	36375504	36553007
STAC_chr3_36375504_36553007	0/0	t0014	1859	1	0	1	0	0	0	copy fasta	STAC	chr3	36375504	36553007
STAC_chr3_36375504_36553007	0/0	t0015	1859	1	1	0	0	0	0	copy fasta	STAC	chr3	36375504	36553007
STAC_chr3_36375504_36553007	0/0	t0016	1859	1	0	0	1	0	0	copy fasta	STAC	chr3	36375504	36553007
STAC_chr3_36375504_36553007	0/0	t0017	1859	1	0	1	0	0	0	copy fasta	STAC	chr3	36375504	36553007
STAC_chr3_36375504_36553007	0/0	t0018	1859	1	0	0	1	0	0	copy fasta	STAC	chr3	36375504	36553007
STAC_chr3_36375504_36553007	0/0	t0019	1859	1	0	0	1	0	0	copy fasta	STAC	chr3	36375504	36553007
STAC_chr3_36375504_36553007	0/0	t0020	1858	1	1	0	0	0	0	copy fasta	STAC	chr3	36375504	36553007
STAG1_chr3_136331236_136757378	0/1	t0001	2282	71	3	17	30	7	13	copy fasta	STAG1	chr3	136331236	136757378
STAG1_chr3_136331236_136757378	0/0	t0002	2282	69	35	18	4	2	10	copy fasta	STAG1	chr3	136331236	136757378
STAG1_chr3_136331236_136757378	0/0	t0003	2286	36	1	4	26	3	2	copy fasta	STAG1	chr3	136331236	136757378
STAG1_chr3_136331236_136757378	0/0	t0004	2282	22	5	5	2	2	8	copy fasta	STAG1	chr3	136331236	136757378
STAG1_chr3_136331236_136757378	0/0	t0005	2282	15	6	5	0	1	3	copy fasta	STAG1	chr3	136331236	136757378
STAG1_chr3_136331236_136757378	0/0	t0006	2286	7	7	0	0	0	0	copy fasta	STAG1	chr3	136331236	136757378
STAG1_chr3_136331236_136757378	0/0	t0007	2282	4	3	1	0	0	0	copy fasta	STAG1	chr3	136331236	136757378
STAG1_chr3_136331236_136757378	0/0	t0008	2282	3	3	0	0	0	0	copy fasta	STAG1	chr3	136331236	136757378
STAG1_chr3_136331236_136757378	0/0	t0009	2282	2	2	0	0	0	0	copy fasta	STAG1	chr3	136331236	136757378
STAG1_chr3_136331236_136757378	0/0	t0010	2282	1	1	0	0	0	0	copy fasta	STAG1	chr3	136331236	136757378
STAG1_chr3_136331236_136757378	0/0	t0011	2282	1	1	0	0	0	0	copy fasta	STAG1	chr3	136331236	136757378
STAG1_chr3_136331236_136757378	0/0	t0012	2282	1	0	0	1	0	0	copy fasta	STAG1	chr3	136331236	136757378
STAG1_chr3_136331236_136757378	1/0	t0013	2286	1	0	0	0	0	0	copy fasta	STAG1	chr3	136331236	136757378
STAG1_chr3_136331236_136757378	0/0	t0014	2286	1	1	0	0	0	0	copy fasta	STAG1	chr3	136331236	136757378
STAG1_chr3_136331236_136757378	0/0	t0015	2282	1	0	1	0	0	0	copy fasta	STAG1	chr3	136331236	136757378
STAG1_chr3_136331236_136757378	0/0	t0016	2282	1	1	0	0	0	0	copy fasta	STAG1	chr3	136331236	136757378
STAG1_chr3_136331236_136757378	0/0	t0017	2282	1	1	0	0	0	0	copy fasta	STAG1	chr3	136331236	136757378
STAG1_chr3_136331236_136757378	0/0	t0018	2282	1	0	0	0	1	0	copy fasta	STAG1	chr3	136331236	136757378
STAG1_chr3_136331236_136757378	0/0	t0019	2286	1	0	1	0	0	0	copy fasta	STAG1	chr3	136331236	136757378
STAG1_chr3_136331236_136757378	0/0	t0020	2263	1	0	0	1	0	0	copy fasta	STAG1	chr3	136331236	136757378
STAG2_chrX_123956706_124107656	1/1	t0001	2373	209	57	34	96	2	18	copy fasta	STAG2	chrX	123956706	124107656
STAG2_chrX_123956706_124107656	0/0	t0002	2372	47	2	7	21	5	12	copy fasta	STAG2	chrX	123956706	124107656
STAG2_chrX_123956706_124107656	0/0	t0003	2373	5	5	0	0	0	0	copy fasta	STAG2	chrX	123956706	124107656
STAG2_chrX_123956706_124107656	0/0	t0004	2374	4	4	0	0	0	0	copy fasta	STAG2	chrX	123956706	124107656
STAG2_chrX_123956706_124107656	0/0	t0005	2372	3	0	0	3	0	0	copy fasta	STAG2	chrX	123956706	124107656
STAG2_chrX_123956706_124107656	0/0	t0006	2371	3	1	2	0	0	0	copy fasta	STAG2	chrX	123956706	124107656
STAG2_chrX_123956706_124107656	0/0	t0007	2373	2	0	0	2	0	0	copy fasta	STAG2	chrX	123956706	124107656
STAG2_chrX_123956706_124107656	0/0	t0008	2374	1	0	0	1	0	0	copy fasta	STAG2	chrX	123956706	124107656
STAG2_chrX_123956706_124107656	0/0	t0009	2372	1	0	1	0	0	0	copy fasta	STAG2	chrX	123956706	124107656
STAG2_chrX_123956706_124107656	0/0	t0010	2368	1	1	0	0	0	0	copy fasta	STAG2	chrX	123956706	124107656
STAG3_chr7_100172918_100219381	0/1	t0001	519	182	40	24	71	13	33	copy fasta	STAG3	chr7	100172918	100219381
STAG3_chr7_100172918_100219381	1/0	t0002	519	109	8	19	63	3	15	copy fasta	STAG3	chr7	100172918	100219381
STAG3_chr7_100172918_100219381	0/0	t0003	519	21	21	0	0	0	0	copy fasta	STAG3	chr7	100172918	100219381
STAG3_chr7_100172918_100219381	0/0	t0004	519	6	5	1	0	0	0	copy fasta	STAG3	chr7	100172918	100219381
STAG3_chr7_100172918_100219381	0/0	t0005	519	4	4	0	0	0	0	copy fasta	STAG3	chr7	100172918	100219381
STAM2_chr2_152111801_152180763	1/0	t0001	3895	62	6	22	21	5	7	copy fasta	STAM2	chr2	152111801	152180763