JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SYT14_chr1_209933217_210176315	0/0	t0057	10320	1	1	0	0	0	0	copy fasta	SYT14	chr1	209933217	210176315
SYT14_chr1_209933217_210176315	0/0	t0058	10321	1	1	0	0	0	0	copy fasta	SYT14	chr1	209933217	210176315
SYT14_chr1_209933217_210176315	0/0	t0059	10321	1	1	0	0	0	0	copy fasta	SYT14	chr1	209933217	210176315
SYT14_chr1_209933217_210176315	0/0	t0060	10316	1	1	0	0	0	0	copy fasta	SYT14	chr1	209933217	210176315
SYT14_chr1_209933217_210176315	0/0	t0061	10322	1	0	1	0	0	0	copy fasta	SYT14	chr1	209933217	210176315
SYT14_chr1_209933217_210176315	0/0	t0062	10323	1	0	0	0	0	1	copy fasta	SYT14	chr1	209933217	210176315
SYT14_chr1_209933217_210176315	0/0	t0063	10323	1	1	0	0	0	0	copy fasta	SYT14	chr1	209933217	210176315
SYT14_chr1_209933217_210176315	0/0	t0064	10323	1	0	0	1	0	0	copy fasta	SYT14	chr1	209933217	210176315
SYT14_chr1_209933217_210176315	0/0	t0065	10321	1	1	0	0	0	0	copy fasta	SYT14	chr1	209933217	210176315
SYT14_chr1_209933217_210176315	0/0	t0066	10322	1	0	1	0	0	0	copy fasta	SYT14	chr1	209933217	210176315
SYT14_chr1_209933217_210176315	0/0	t0067	10322	1	0	0	0	0	1	copy fasta	SYT14	chr1	209933217	210176315
SYT14_chr1_209933217_210176315	0/0	t0068	10318	1	0	1	0	0	0	copy fasta	SYT14	chr1	209933217	210176315
SYT14_chr1_209933217_210176315	0/0	t0069	10320	1	0	0	1	0	0	copy fasta	SYT14	chr1	209933217	210176315
SYT14_chr1_209933217_210176315	0/0	t0070	10321	1	0	0	1	0	0	copy fasta	SYT14	chr1	209933217	210176315
SYT14_chr1_209933217_210176315	0/0	t0071	10320	1	0	0	1	0	0	copy fasta	SYT14	chr1	209933217	210176315
SYT14_chr1_209933217_210176315	0/0	t0072	10318	1	0	0	1	0	0	copy fasta	SYT14	chr1	209933217	210176315
SYT14_chr1_209933217_210176315	0/0	t0073	10323	1	0	0	0	0	1	copy fasta	SYT14	chr1	209933217	210176315
SYT14_chr1_209933217_210176315	0/0	t0074	10324	1	0	0	1	0	0	copy fasta	SYT14	chr1	209933217	210176315
SYT14_chr1_209933217_210176315	0/0	t0075	10322	1	0	0	0	0	1	copy fasta	SYT14	chr1	209933217	210176315
SYT14_chr1_209933217_210176315	0/0	t0076	10319	1	1	0	0	0	0	copy fasta	SYT14	chr1	209933217	210176315
SYT14_chr1_209933217_210176315	0/0	t0077	10317	1	1	0	0	0	0	copy fasta	SYT14	chr1	209933217	210176315
SYT14_chr1_209933217_210176315	0/0	t0078	10315	1	1	0	0	0	0	copy fasta	SYT14	chr1	209933217	210176315
SYT14_chr1_209933217_210176315	0/0	t0079	10317	1	1	0	0	0	0	copy fasta	SYT14	chr1	209933217	210176315
SYT14_chr1_209933217_210176315	0/0	t0080	10317	1	1	0	0	0	0	copy fasta	SYT14	chr1	209933217	210176315
SYT14_chr1_209933217_210176315	0/0	t0081	10315	1	1	0	0	0	0	copy fasta	SYT14	chr1	209933217	210176315
SYT14_chr1_209933217_210176315	0/0	t0082	10317	1	1	0	0	0	0	copy fasta	SYT14	chr1	209933217	210176315
SYT14_chr1_209933217_210176315	0/0	t0083	10314	1	0	0	1	0	0	copy fasta	SYT14	chr1	209933217	210176315
SYT14_chr1_209933217_210176315	0/0	t0084	10314	1	0	0	1	0	0	copy fasta	SYT14	chr1	209933217	210176315
SYT14_chr1_209933217_210176315	0/0	t0085	10312	1	1	0	0	0	0	copy fasta	SYT14	chr1	209933217	210176315
SYT14_chr1_209933217_210176315	0/0	t0086	10315	1	0	0	0	0	1	copy fasta	SYT14	chr1	209933217	210176315
SYT14_chr1_209933217_210176315	0/0	t0087	10316	1	0	0	0	0	1	copy fasta	SYT14	chr1	209933217	210176315
SYT14_chr1_209933217_210176315	0/0	t0088	10314	1	0	0	1	0	0	copy fasta	SYT14	chr1	209933217	210176315
SYT14_chr1_209933217_210176315	0/0	t0089	10319	1	0	1	0	0	0	copy fasta	SYT14	chr1	209933217	210176315
SYT14_chr1_209933217_210176315	0/0	t0090	10321	1	1	0	0	0	0	copy fasta	SYT14	chr1	209933217	210176315
SYT15B_chr10_47739717_47768592	0/0	t0001	10408	40	1	8	27	2	2	copy fasta	SYT15B	chr10	47739717	47768592
SYT15B_chr10_47739717_47768592	0/0	t0002	10409	39	0	13	17	2	7	copy fasta	SYT15B	chr10	47739717	47768592
SYT15B_chr10_47739717_47768592	0/0	t0003	10412	35	13	6	15	0	1	copy fasta	SYT15B	chr10	47739717	47768592
SYT15B_chr10_47739717_47768592	0/0	t0004	10412	19	1	5	8	4	1	copy fasta	SYT15B	chr10	47739717	47768592
SYT15B_chr10_47739717_47768592	0/0	t0005	10413	11	4	1	5	0	1	copy fasta	SYT15B	chr10	47739717	47768592
SYT15B_chr10_47739717_47768592	0/0	t0006	10412	10	0	1	4	1	4	copy fasta	SYT15B	chr10	47739717	47768592
SYT15B_chr10_47739717_47768592	0/0	t0007	10408	10	0	0	10	0	0	copy fasta	SYT15B	chr10	47739717	47768592
SYT15B_chr10_47739717_47768592	0/0	t0008	10408	8	8	0	0	0	0	copy fasta	SYT15B	chr10	47739717	47768592
SYT15B_chr10_47739717_47768592	0/0	t0009	10412	7	0	0	7	0	0	copy fasta	SYT15B	chr10	47739717	47768592
SYT15B_chr10_47739717_47768592	0/0	t0010	10408	6	0	0	6	0	0	copy fasta	SYT15B	chr10	47739717	47768592
SYT15B_chr10_47739717_47768592	0/0	t0011	10413	5	0	0	5	0	0	copy fasta	SYT15B	chr10	47739717	47768592
SYT15B_chr10_47739717_47768592	0/0	t0012	10412	5	5	0	0	0	0	copy fasta	SYT15B	chr10	47739717	47768592
SYT15B_chr10_47739717_47768592	0/0	t0013	10413	4	0	0	4	0	0	copy fasta	SYT15B	chr10	47739717	47768592
SYT15B_chr10_47739717_47768592	0/0	t0014	10408	4	0	3	0	0	1	copy fasta	SYT15B	chr10	47739717	47768592
SYT15B_chr10_47739717_47768592	0/0	t0015	10408	4	0	0	4	0	0	copy fasta	SYT15B	chr10	47739717	47768592
SYT15B_chr10_47739717_47768592	0/0	t0016	10409	4	4	0	0	0	0	copy fasta	SYT15B	chr10	47739717	47768592