JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SYT15B_chr10_47739717_47768592	0/0	t0017	10408	4	0	0	4	0	0	copy fasta	SYT15B	chr10	47739717	47768592
SYT15B_chr10_47739717_47768592	0/0	t0018	10412	3	0	2	0	0	1	copy fasta	SYT15B	chr10	47739717	47768592
SYT15B_chr10_47739717_47768592	0/0	t0019	10409	3	0	0	3	0	0	copy fasta	SYT15B	chr10	47739717	47768592
SYT15B_chr10_47739717_47768592	0/0	t0020	10412	3	0	3	0	0	0	copy fasta	SYT15B	chr10	47739717	47768592
SYT15B_chr10_47739717_47768592	0/0	t0021	10404	3	1	0	2	0	0	copy fasta	SYT15B	chr10	47739717	47768592
SYT15B_chr10_47739717_47768592	0/0	t0022	10412	3	0	1	0	2	0	copy fasta	SYT15B	chr10	47739717	47768592
SYT15B_chr10_47739717_47768592	0/0	t0023	10408	3	0	0	3	0	0	copy fasta	SYT15B	chr10	47739717	47768592
SYT15B_chr10_47739717_47768592	0/0	t0024	10412	2	0	2	0	0	0	copy fasta	SYT15B	chr10	47739717	47768592
SYT15B_chr10_47739717_47768592	0/0	t0025	10412	2	0	2	0	0	0	copy fasta	SYT15B	chr10	47739717	47768592
SYT15B_chr10_47739717_47768592	0/0	t0026	10412	2	2	0	0	0	0	copy fasta	SYT15B	chr10	47739717	47768592
SYT15B_chr10_47739717_47768592	0/0	t0027	10412	2	0	0	2	0	0	copy fasta	SYT15B	chr10	47739717	47768592
SYT15B_chr10_47739717_47768592	0/0	t0028	10412	2	2	0	0	0	0	copy fasta	SYT15B	chr10	47739717	47768592
SYT15B_chr10_47739717_47768592	0/0	t0029	10412	2	0	2	0	0	0	copy fasta	SYT15B	chr10	47739717	47768592
SYT15B_chr10_47739717_47768592	0/0	t0030	10408	2	0	1	1	0	0	copy fasta	SYT15B	chr10	47739717	47768592
SYT15B_chr10_47739717_47768592	0/0	t0031	10413	2	0	0	1	0	1	copy fasta	SYT15B	chr10	47739717	47768592
SYT15B_chr10_47739717_47768592	0/0	t0032	10412	2	0	0	2	0	0	copy fasta	SYT15B	chr10	47739717	47768592
SYT15B_chr10_47739717_47768592	0/0	t0033	10411	2	0	1	0	0	1	copy fasta	SYT15B	chr10	47739717	47768592
SYT15B_chr10_47739717_47768592	0/0	t0034	10413	2	2	0	0	0	0	copy fasta	SYT15B	chr10	47739717	47768592
SYT15B_chr10_47739717_47768592	0/0	t0035	10413	2	2	0	0	0	0	copy fasta	SYT15B	chr10	47739717	47768592
SYT15B_chr10_47739717_47768592	0/0	t0036	10412	2	0	0	2	0	0	copy fasta	SYT15B	chr10	47739717	47768592
SYT15B_chr10_47739717_47768592	0/0	t0037	10408	2	1	1	0	0	0	copy fasta	SYT15B	chr10	47739717	47768592
SYT15B_chr10_47739717_47768592	0/0	t0038	10408	2	0	0	2	0	0	copy fasta	SYT15B	chr10	47739717	47768592
SYT15B_chr10_47739717_47768592	0/0	t0039	10408	2	0	0	2	0	0	copy fasta	SYT15B	chr10	47739717	47768592
SYT15B_chr10_47739717_47768592	0/0	t0040	10408	2	1	1	0	0	0	copy fasta	SYT15B	chr10	47739717	47768592
SYT15B_chr10_47739717_47768592	0/0	t0041	10408	2	2	0	0	0	0	copy fasta	SYT15B	chr10	47739717	47768592
SYT15B_chr10_47739717_47768592	0/0	t0042	10408	2	2	0	0	0	0	copy fasta	SYT15B	chr10	47739717	47768592
SYT15B_chr10_47739717_47768592	0/0	t0043	10412	1	1	0	0	0	0	copy fasta	SYT15B	chr10	47739717	47768592
SYT15B_chr10_47739717_47768592	0/0	t0044	10409	1	0	0	0	1	0	copy fasta	SYT15B	chr10	47739717	47768592
SYT15B_chr10_47739717_47768592	0/0	t0045	10412	1	0	0	0	0	1	copy fasta	SYT15B	chr10	47739717	47768592
SYT15B_chr10_47739717_47768592	0/0	t0046	10409	1	0	0	1	0	0	copy fasta	SYT15B	chr10	47739717	47768592
SYT15B_chr10_47739717_47768592	0/0	t0047	10412	1	0	0	0	0	1	copy fasta	SYT15B	chr10	47739717	47768592
SYT15B_chr10_47739717_47768592	0/0	t0048	10413	1	0	0	1	0	0	copy fasta	SYT15B	chr10	47739717	47768592
SYT15B_chr10_47739717_47768592	0/0	t0049	10412	1	0	0	1	0	0	copy fasta	SYT15B	chr10	47739717	47768592
SYT15B_chr10_47739717_47768592	0/0	t0050	10412	1	0	0	1	0	0	copy fasta	SYT15B	chr10	47739717	47768592
SYT15B_chr10_47739717_47768592	0/0	t0051	10412	1	0	0	1	0	0	copy fasta	SYT15B	chr10	47739717	47768592
SYT15B_chr10_47739717_47768592	0/0	t0052	10413	1	0	0	1	0	0	copy fasta	SYT15B	chr10	47739717	47768592
SYT15B_chr10_47739717_47768592	0/0	t0053	10413	1	0	1	0	0	0	copy fasta	SYT15B	chr10	47739717	47768592
SYT15B_chr10_47739717_47768592	0/0	t0054	10412	1	0	0	1	0	0	copy fasta	SYT15B	chr10	47739717	47768592
SYT15B_chr10_47739717_47768592	0/0	t0055	10412	1	1	0	0	0	0	copy fasta	SYT15B	chr10	47739717	47768592
SYT15B_chr10_47739717_47768592	0/0	t0056	10412	1	1	0	0	0	0	copy fasta	SYT15B	chr10	47739717	47768592
SYT15B_chr10_47739717_47768592	0/0	t0057	10412	1	0	0	1	0	0	copy fasta	SYT15B	chr10	47739717	47768592
SYT15B_chr10_47739717_47768592	0/0	t0058	10412	1	0	0	1	0	0	copy fasta	SYT15B	chr10	47739717	47768592
SYT15B_chr10_47739717_47768592	0/0	t0059	10412	1	0	0	1	0	0	copy fasta	SYT15B	chr10	47739717	47768592
SYT15B_chr10_47739717_47768592	0/0	t0060	10413	1	0	0	1	0	0	copy fasta	SYT15B	chr10	47739717	47768592
SYT15B_chr10_47739717_47768592	0/0	t0061	10412	1	0	1	0	0	0	copy fasta	SYT15B	chr10	47739717	47768592
SYT15B_chr10_47739717_47768592	0/0	t0062	10413	1	0	0	1	0	0	copy fasta	SYT15B	chr10	47739717	47768592
SYT15B_chr10_47739717_47768592	0/0	t0063	10412	1	0	0	1	0	0	copy fasta	SYT15B	chr10	47739717	47768592
SYT15B_chr10_47739717_47768592	0/0	t0064	10408	1	0	0	0	0	1	copy fasta	SYT15B	chr10	47739717	47768592
SYT15B_chr10_47739717_47768592	0/0	t0065	10408	1	0	0	1	0	0	copy fasta	SYT15B	chr10	47739717	47768592
SYT15B_chr10_47739717_47768592	0/0	t0066	10409	1	0	0	1	0	0	copy fasta	SYT15B	chr10	47739717	47768592