JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SYT15B_chr10_47739717_47768592	0/0	t0067	10409	1	0	0	1	0	0	copy fasta	SYT15B	chr10	47739717	47768592
SYT15B_chr10_47739717_47768592	0/0	t0068	10408	1	0	0	1	0	0	copy fasta	SYT15B	chr10	47739717	47768592
SYT15B_chr10_47739717_47768592	0/0	t0069	10409	1	0	1	0	0	0	copy fasta	SYT15B	chr10	47739717	47768592
SYT15B_chr10_47739717_47768592	0/0	t0070	10409	1	0	1	0	0	0	copy fasta	SYT15B	chr10	47739717	47768592
SYT15B_chr10_47739717_47768592	0/0	t0071	10410	1	0	0	1	0	0	copy fasta	SYT15B	chr10	47739717	47768592
SYT15B_chr10_47739717_47768592	0/0	t0072	10410	1	1	0	0	0	0	copy fasta	SYT15B	chr10	47739717	47768592
SYT15B_chr10_47739717_47768592	0/0	t0073	10409	1	0	0	1	0	0	copy fasta	SYT15B	chr10	47739717	47768592
SYT15B_chr10_47739717_47768592	0/0	t0074	10409	1	0	0	1	0	0	copy fasta	SYT15B	chr10	47739717	47768592
SYT15B_chr10_47739717_47768592	0/0	t0075	10410	1	0	1	0	0	0	copy fasta	SYT15B	chr10	47739717	47768592
SYT15B_chr10_47739717_47768592	0/0	t0076	10412	1	1	0	0	0	0	copy fasta	SYT15B	chr10	47739717	47768592
SYT15B_chr10_47739717_47768592	0/0	t0077	10412	1	0	0	0	0	1	copy fasta	SYT15B	chr10	47739717	47768592
SYT15B_chr10_47739717_47768592	0/0	t0078	10413	1	0	0	1	0	0	copy fasta	SYT15B	chr10	47739717	47768592
SYT15B_chr10_47739717_47768592	0/0	t0079	10412	1	0	0	0	0	1	copy fasta	SYT15B	chr10	47739717	47768592
SYT15B_chr10_47739717_47768592	0/0	t0080	10412	1	0	0	0	0	1	copy fasta	SYT15B	chr10	47739717	47768592
SYT15B_chr10_47739717_47768592	0/0	t0081	10411	1	0	0	1	0	0	copy fasta	SYT15B	chr10	47739717	47768592
SYT15B_chr10_47739717_47768592	0/0	t0082	10413	1	0	0	1	0	0	copy fasta	SYT15B	chr10	47739717	47768592
SYT15B_chr10_47739717_47768592	0/0	t0083	10411	1	1	0	0	0	0	copy fasta	SYT15B	chr10	47739717	47768592
SYT15B_chr10_47739717_47768592	0/0	t0084	10413	1	1	0	0	0	0	copy fasta	SYT15B	chr10	47739717	47768592
SYT15B_chr10_47739717_47768592	0/0	t0085	10412	1	0	0	1	0	0	copy fasta	SYT15B	chr10	47739717	47768592
SYT15B_chr10_47739717_47768592	0/0	t0086	10413	1	0	0	0	0	1	copy fasta	SYT15B	chr10	47739717	47768592
SYT15B_chr10_47739717_47768592	0/0	t0087	10407	1	1	0	0	0	0	copy fasta	SYT15B	chr10	47739717	47768592
SYT15B_chr10_47739717_47768592	0/0	t0088	10408	1	1	0	0	0	0	copy fasta	SYT15B	chr10	47739717	47768592
SYT15B_chr10_47739717_47768592	0/0	t0089	10413	1	1	0	0	0	0	copy fasta	SYT15B	chr10	47739717	47768592
SYT15B_chr10_47739717_47768592	0/0	t0090	10408	1	1	0	0	0	0	copy fasta	SYT15B	chr10	47739717	47768592
SYT15B_chr10_47739717_47768592	0/0	t0091	10408	1	1	0	0	0	0	copy fasta	SYT15B	chr10	47739717	47768592
SYT15B_chr10_47739717_47768592	0/0	t0092	10408	1	0	0	1	0	0	copy fasta	SYT15B	chr10	47739717	47768592
SYT15B_chr10_47739717_47768592	0/0	t0093	10412	1	1	0	0	0	0	copy fasta	SYT15B	chr10	47739717	47768592
SYT15B_chr10_47739717_47768592	0/0	t0094	10408	1	1	0	0	0	0	copy fasta	SYT15B	chr10	47739717	47768592
SYT15B_chr10_47739717_47768592	0/0	t0095	10408	1	0	1	0	0	0	copy fasta	SYT15B	chr10	47739717	47768592
SYT15B_chr10_47739717_47768592	0/0	t0096	10408	1	1	0	0	0	0	copy fasta	SYT15B	chr10	47739717	47768592
SYT15B_chr10_47739717_47768592	0/0	t0097	10408	1	0	0	1	0	0	copy fasta	SYT15B	chr10	47739717	47768592
SYT15B_chr10_47739717_47768592	0/0	t0098	10409	1	0	0	1	0	0	copy fasta	SYT15B	chr10	47739717	47768592
SYT15B_chr10_47739717_47768592	0/0	t0099	10408	1	1	0	0	0	0	copy fasta	SYT15B	chr10	47739717	47768592
SYT15B_chr10_47739717_47768592	0/0	t0100	10408	1	1	0	0	0	0	copy fasta	SYT15B	chr10	47739717	47768592
SYT15B_chr10_47739717_47768592	0/0	t0101	10408	1	0	0	0	0	1	copy fasta	SYT15B	chr10	47739717	47768592
SYT15B_chr10_47739717_47768592	0/0	t0102	10407	1	0	0	1	0	0	copy fasta	SYT15B	chr10	47739717	47768592
SYT15B_chr10_47739717_47768592	0/0	t0103	10408	1	0	0	1	0	0	copy fasta	SYT15B	chr10	47739717	47768592
SYT15B_chr10_47739717_47768592	0/0	t0104	10409	1	0	0	1	0	0	copy fasta	SYT15B	chr10	47739717	47768592
SYT15B_chr10_47739717_47768592	0/0	t0105	10408	1	0	0	0	0	1	copy fasta	SYT15B	chr10	47739717	47768592
SYT15B_chr10_47739717_47768592	0/0	t0106	10408	1	0	0	1	0	0	copy fasta	SYT15B	chr10	47739717	47768592
SYT15B_chr10_47739717_47768592	0/0	t0107	10410	1	0	1	0	0	0	copy fasta	SYT15B	chr10	47739717	47768592
SYT15B_chr10_47739717_47768592	0/0	t0108	10407	1	0	0	1	0	0	copy fasta	SYT15B	chr10	47739717	47768592
SYT15B_chr10_47739717_47768592	0/0	t0109	10409	1	0	0	1	0	0	copy fasta	SYT15B	chr10	47739717	47768592
SYT15B_chr10_47739717_47768592	0/0	t0110	10412	1	0	0	0	0	1	copy fasta	SYT15B	chr10	47739717	47768592
SYT15B_chr10_47739717_47768592	0/0	t0111	10408	1	0	0	1	0	0	copy fasta	SYT15B	chr10	47739717	47768592
SYT15_chr10_46574128_46597064	0/0	t0001	4462	144	8	28	85	4	19	copy fasta	SYT15	chr10	46574128	46597064
SYT15_chr10_46574128_46597064	0/0	t0002	4462	37	4	19	0	6	8	copy fasta	SYT15	chr10	46574128	46597064
SYT15_chr10_46574128_46597064	0/0	t0003	4458	13	6	5	2	0	0	copy fasta	SYT15	chr10	46574128	46597064
SYT15_chr10_46574128_46597064	0/0	t0004	4462	11	0	0	10	0	1	copy fasta	SYT15	chr10	46574128	46597064
SYT15_chr10_46574128_46597064	0/0	t0005	4457	9	0	0	8	0	1	copy fasta	SYT15	chr10	46574128	46597064