JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TANC2_chr17_62961235_63432703	0/0	t0032	6287	1	1	0	0	0	0	copy fasta	TANC2	chr17	62961235	63432703
TANC2_chr17_62961235_63432703	0/0	t0033	6287	1	0	1	0	0	0	copy fasta	TANC2	chr17	62961235	63432703
TANC2_chr17_62961235_63432703	0/0	t0034	6287	1	0	0	1	0	0	copy fasta	TANC2	chr17	62961235	63432703
TANC2_chr17_62961235_63432703	0/0	t0035	6287	1	1	0	0	0	0	copy fasta	TANC2	chr17	62961235	63432703
TANGO2_chr22_20016110_20072164	1/0	t0001	2679	89	20	17	34	7	10	copy fasta	TANGO2	chr22	20016110	20072164
TANGO2_chr22_20016110_20072164	0/0	t0002	2679	76	27	9	27	3	10	copy fasta	TANGO2	chr22	20016110	20072164
TANGO2_chr22_20016110_20072164	0/0	t0003	2679	58	0	13	38	3	4	copy fasta	TANGO2	chr22	20016110	20072164
TANGO2_chr22_20016110_20072164	0/1	t0004	2678	26	0	9	6	2	8	copy fasta	TANGO2	chr22	20016110	20072164
TANGO2_chr22_20016110_20072164	0/0	t0005	2679	19	0	1	18	0	0	copy fasta	TANGO2	chr22	20016110	20072164
TANGO2_chr22_20016110_20072164	0/0	t0006	2679	17	3	3	11	0	0	copy fasta	TANGO2	chr22	20016110	20072164
TANGO2_chr22_20016110_20072164	0/0	t0007	2679	14	1	1	12	0	0	copy fasta	TANGO2	chr22	20016110	20072164
TANGO2_chr22_20016110_20072164	0/0	t0008	2679	11	11	0	0	0	0	copy fasta	TANGO2	chr22	20016110	20072164
TANGO2_chr22_20016110_20072164	0/0	t0009	2679	10	3	1	3	0	3	copy fasta	TANGO2	chr22	20016110	20072164
TANGO2_chr22_20016110_20072164	0/0	t0010	2679	7	7	0	0	0	0	copy fasta	TANGO2	chr22	20016110	20072164
TANGO2_chr22_20016110_20072164	0/0	t0011	2679	6	0	0	1	1	4	copy fasta	TANGO2	chr22	20016110	20072164
TANGO2_chr22_20016110_20072164	0/0	t0012	2678	6	0	3	2	0	1	copy fasta	TANGO2	chr22	20016110	20072164
TANGO2_chr22_20016110_20072164	0/0	t0013	2679	5	5	0	0	0	0	copy fasta	TANGO2	chr22	20016110	20072164
TANGO2_chr22_20016110_20072164	0/0	t0014	2679	5	3	2	0	0	0	copy fasta	TANGO2	chr22	20016110	20072164
TANGO2_chr22_20016110_20072164	0/0	t0015	2679	5	1	2	1	0	1	copy fasta	TANGO2	chr22	20016110	20072164
TANGO2_chr22_20016110_20072164	0/0	t0016	2679	4	0	4	0	0	0	copy fasta	TANGO2	chr22	20016110	20072164
TANGO2_chr22_20016110_20072164	0/0	t0017	2679	3	0	1	0	2	0	copy fasta	TANGO2	chr22	20016110	20072164
TANGO2_chr22_20016110_20072164	0/0	t0018	2679	3	3	0	0	0	0	copy fasta	TANGO2	chr22	20016110	20072164
TANGO2_chr22_20016110_20072164	0/0	t0019	2679	3	3	0	0	0	0	copy fasta	TANGO2	chr22	20016110	20072164
TANGO2_chr22_20016110_20072164	0/0	t0020	2679	2	0	2	0	0	0	copy fasta	TANGO2	chr22	20016110	20072164
TANGO2_chr22_20016110_20072164	0/0	t0021	2679	2	2	0	0	0	0	copy fasta	TANGO2	chr22	20016110	20072164
TANGO2_chr22_20016110_20072164	0/0	t0022	2679	2	0	0	0	0	2	copy fasta	TANGO2	chr22	20016110	20072164
TANGO2_chr22_20016110_20072164	0/0	t0023	2679	2	2	0	0	0	0	copy fasta	TANGO2	chr22	20016110	20072164
TANGO2_chr22_20016110_20072164	0/0	t0024	2679	2	2	0	0	0	0	copy fasta	TANGO2	chr22	20016110	20072164
TANGO2_chr22_20016110_20072164	0/0	t0025	2679	1	0	0	0	0	1	copy fasta	TANGO2	chr22	20016110	20072164
TANGO2_chr22_20016110_20072164	0/0	t0026	2679	1	0	0	1	0	0	copy fasta	TANGO2	chr22	20016110	20072164
TANGO2_chr22_20016110_20072164	0/0	t0027	2679	1	0	0	0	0	1	copy fasta	TANGO2	chr22	20016110	20072164
TANGO2_chr22_20016110_20072164	0/0	t0028	2679	1	1	0	0	0	0	copy fasta	TANGO2	chr22	20016110	20072164
TANGO2_chr22_20016110_20072164	0/0	t0029	2679	1	1	0	0	0	0	copy fasta	TANGO2	chr22	20016110	20072164
TANGO2_chr22_20016110_20072164	0/0	t0030	2707	1	0	0	1	0	0	copy fasta	TANGO2	chr22	20016110	20072164
TANGO2_chr22_20016110_20072164	0/0	t0031	2679	1	1	0	0	0	0	copy fasta	TANGO2	chr22	20016110	20072164
TANGO2_chr22_20016110_20072164	0/0	t0032	2679	1	1	0	0	0	0	copy fasta	TANGO2	chr22	20016110	20072164
TANGO2_chr22_20016110_20072164	0/0	t0033	2679	1	0	0	0	0	1	copy fasta	TANGO2	chr22	20016110	20072164
TANGO2_chr22_20016110_20072164	0/0	t0034	2679	1	0	0	1	0	0	copy fasta	TANGO2	chr22	20016110	20072164
TANGO2_chr22_20016110_20072164	0/0	t0035	2679	1	1	0	0	0	0	copy fasta	TANGO2	chr22	20016110	20072164
TANGO2_chr22_20016110_20072164	0/0	t0036	2679	1	1	0	0	0	0	copy fasta	TANGO2	chr22	20016110	20072164
TANGO2_chr22_20016110_20072164	0/0	t0037	2679	1	0	0	1	0	0	copy fasta	TANGO2	chr22	20016110	20072164
TANGO2_chr22_20016110_20072164	0/0	t0038	2679	1	0	0	1	0	0	copy fasta	TANGO2	chr22	20016110	20072164
TANGO2_chr22_20016110_20072164	0/0	t0039	2679	1	1	0	0	0	0	copy fasta	TANGO2	chr22	20016110	20072164
TANGO6_chr16_68838531_69090182	1/1	t0001	1609	195	65	42	59	7	20	copy fasta	TANGO6	chr16	68838531	69090182
TANGO6_chr16_68838531_69090182	0/0	t0002	1609	4	4	0	0	0	0	copy fasta	TANGO6	chr16	68838531	69090182
TANGO6_chr16_68838531_69090182	0/0	t0003	1609	3	0	2	0	1	0	copy fasta	TANGO6	chr16	68838531	69090182
TANGO6_chr16_68838531_69090182	0/0	t0004	1609	2	2	0	0	0	0	copy fasta	TANGO6	chr16	68838531	69090182
TANGO6_chr16_68838531_69090182	0/0	t0005	1609	2	0	0	2	0	0	copy fasta	TANGO6	chr16	68838531	69090182
TANGO6_chr16_68838531_69090182	0/0	t0006	1609	2	2	0	0	0	0	copy fasta	TANGO6	chr16	68838531	69090182
TANGO6_chr16_68838531_69090182	0/0	t0007	1609	1	0	0	1	0	0	copy fasta	TANGO6	chr16	68838531	69090182