JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TCEA3_chr1_23375909_23429748	0/0	t0001	673	146	6	39	69	7	25	copy fasta	TCEA3	chr1	23375909	23429748
TCEA3_chr1_23375909_23429748	0/1	t0002	673	132	29	18	63	5	16	copy fasta	TCEA3	chr1	23375909	23429748
TCEA3_chr1_23375909_23429748	1/0	t0003	673	69	38	13	12	1	4	copy fasta	TCEA3	chr1	23375909	23429748
TCEA3_chr1_23375909_23429748	0/0	t0004	673	13	2	2	5	3	1	copy fasta	TCEA3	chr1	23375909	23429748
TCEA3_chr1_23375909_23429748	0/0	t0005	673	11	11	0	0	0	0	copy fasta	TCEA3	chr1	23375909	23429748
TCEA3_chr1_23375909_23429748	0/0	t0006	673	3	0	0	3	0	0	copy fasta	TCEA3	chr1	23375909	23429748
TCEA3_chr1_23375909_23429748	0/0	t0007	673	2	2	0	0	0	0	copy fasta	TCEA3	chr1	23375909	23429748
TCEA3_chr1_23375909_23429748	0/0	t0008	673	2	2	0	0	0	0	copy fasta	TCEA3	chr1	23375909	23429748
TCEAL1_chrX_103623975_103635953	1/1	t0001	721	297	66	56	134	9	30	copy fasta	TCEAL1	chrX	103623975	103635953
TCEAL1_chrX_103623975_103635953	0/0	t0002	721	5	5	0	0	0	0	copy fasta	TCEAL1	chrX	103623975	103635953
TCEAL1_chrX_103623975_103635953	0/0	t0003	721	4	0	0	4	0	0	copy fasta	TCEAL1	chrX	103623975	103635953
TCEAL1_chrX_103623975_103635953	0/0	t0004	720	3	2	0	1	0	0	copy fasta	TCEAL1	chrX	103623975	103635953
TCEAL1_chrX_103623975_103635953	0/0	t0005	721	2	0	0	2	0	0	copy fasta	TCEAL1	chrX	103623975	103635953
TCEAL1_chrX_103623975_103635953	0/0	t0006	722	1	0	1	0	0	0	copy fasta	TCEAL1	chrX	103623975	103635953
TCEAL1_chrX_103623975_103635953	0/0	t0007	721	1	0	0	1	0	0	copy fasta	TCEAL1	chrX	103623975	103635953
TCEAL1_chrX_103623975_103635953	0/0	t0008	721	1	1	0	0	0	0	copy fasta	TCEAL1	chrX	103623975	103635953
TCEAL2_chrX_102120679_102132712	1/1	t0001	427	286	69	46	135	9	25	copy fasta	TCEAL2	chrX	102120679	102132712
TCEAL2_chrX_102120679_102132712	0/0	t0002	427	11	0	4	0	4	3	copy fasta	TCEAL2	chrX	102120679	102132712
TCEAL2_chrX_102120679_102132712	0/0	t0003	427	8	8	0	0	0	0	copy fasta	TCEAL2	chrX	102120679	102132712
TCEAL2_chrX_102120679_102132712	0/0	t0004	427	1	1	0	0	0	0	copy fasta	TCEAL2	chrX	102120679	102132712
TCEAL2_chrX_102120679_102132712	0/0	t0005	427	1	0	1	0	0	0	copy fasta	TCEAL2	chrX	102120679	102132712
TCEAL2_chrX_102120679_102132712	0/0	t0006	427	1	0	1	0	0	0	copy fasta	TCEAL2	chrX	102120679	102132712
TCEAL2_chrX_102120679_102132712	0/0	t0007	428	1	0	1	0	0	0	copy fasta	TCEAL2	chrX	102120679	102132712
TCEAL3_chrX_103602963_103614927	1/1	t0001	454	282	65	53	122	9	31	copy fasta	TCEAL3	chrX	103602963	103614927
TCEAL3_chrX_103602963_103614927	0/0	t0002	454	7	7	0	0	0	0	copy fasta	TCEAL3	chrX	103602963	103614927
TCEAL3_chrX_103602963_103614927	0/0	t0003	454	1	0	0	0	0	1	copy fasta	TCEAL3	chrX	103602963	103614927
TCEAL4_chrX_103580515_103592729	1/1	t0001	617	287	76	47	130	8	24	copy fasta	TCEAL4	chrX	103580515	103592729
TCEAL4_chrX_103580515_103592729	0/0	t0002	617	9	0	5	0	3	1	copy fasta	TCEAL4	chrX	103580515	103592729
TCEAL4_chrX_103580515_103592729	0/0	t0003	617	4	0	0	4	0	0	copy fasta	TCEAL4	chrX	103580515	103592729
TCEAL4_chrX_103580515_103592729	0/0	t0004	617	2	0	0	2	0	0	copy fasta	TCEAL4	chrX	103580515	103592729
TCEAL4_chrX_103580515_103592729	0/0	t0005	618	1	0	0	0	0	1	copy fasta	TCEAL4	chrX	103580515	103592729
TCEAL4_chrX_103580515_103592729	0/0	t0006	617	1	0	0	1	0	0	copy fasta	TCEAL4	chrX	103580515	103592729
TCEAL4_chrX_103580515_103592729	0/0	t0007	617	1	0	0	1	0	0	copy fasta	TCEAL4	chrX	103580515	103592729
TCEAL5_chrX_103268691_103281750	1/1	t0001	426	303	72	48	137	13	31	copy fasta	TCEAL5	chrX	103268691	103281750
TCEAL5_chrX_103268691_103281750	0/0	t0002	426	29	0	6	23	0	0	copy fasta	TCEAL5	chrX	103268691	103281750
TCEAL5_chrX_103268691_103281750	0/0	t0003	424	1	0	0	1	0	0	copy fasta	TCEAL5	chrX	103268691	103281750
TCEAL5_chrX_103268691_103281750	0/0	t0004	426	1	0	0	0	0	1	copy fasta	TCEAL5	chrX	103268691	103281750
TCEAL5_chrX_103268691_103281750	0/0	t0005	426	1	0	1	0	0	0	copy fasta	TCEAL5	chrX	103268691	103281750
TCEAL7_chrX_103325239_103337326	0/1	t0001	832	205	67	36	73	7	21	copy fasta	TCEAL7	chrX	103325239	103337326
TCEAL7_chrX_103325239_103337326	1/0	t0002	832	105	5	17	67	6	9	copy fasta	TCEAL7	chrX	103325239	103337326
TCEAL7_chrX_103325239_103337326	0/0	t0003	833	2	0	0	2	0	0	copy fasta	TCEAL7	chrX	103325239	103337326
TCEAL7_chrX_103325239_103337326	0/0	t0004	832	1	1	0	0	0	0	copy fasta	TCEAL7	chrX	103325239	103337326
TCEAL7_chrX_103325239_103337326	0/0	t0005	833	1	0	0	1	0	0	copy fasta	TCEAL7	chrX	103325239	103337326
TCEAL7_chrX_103325239_103337326	0/0	t0006	832	1	0	1	0	0	0	copy fasta	TCEAL7	chrX	103325239	103337326
TCEAL7_chrX_103325239_103337326	0/0	t0007	832	1	1	0	0	0	0	copy fasta	TCEAL7	chrX	103325239	103337326
TCEAL8_chrX_103247995_103260155	1/1	t0001	821	322	71	54	153	11	31	copy fasta	TCEAL8	chrX	103247995	103260155
TCEAL8_chrX_103247995_103260155	0/0	t0002	821	5	0	0	5	0	0	copy fasta	TCEAL8	chrX	103247995	103260155
TCEAL8_chrX_103247995_103260155	0/0	t0003	821	3	0	0	3	0	0	copy fasta	TCEAL8	chrX	103247995	103260155
TCEAL8_chrX_103247995_103260155	0/0	t0004	821	2	0	0	1	0	1	copy fasta	TCEAL8	chrX	103247995	103260155
TCEAL8_chrX_103247995_103260155	0/0	t0005	821	1	1	0	0	0	0	copy fasta	TCEAL8	chrX	103247995	103260155