JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TCP11L2_chr12_106297733_106352003	0/0	t0012	719	3	3	0	0	0	0	copy fasta	TCP11L2	chr12	106297733	106352003
TCP11L2_chr12_106297733_106352003	0/0	t0013	718	2	2	0	0	0	0	copy fasta	TCP11L2	chr12	106297733	106352003
TCP11L2_chr12_106297733_106352003	0/0	t0014	719	2	0	0	0	0	2	copy fasta	TCP11L2	chr12	106297733	106352003
TCP11L2_chr12_106297733_106352003	0/0	t0015	718	1	0	0	0	0	1	copy fasta	TCP11L2	chr12	106297733	106352003
TCP11X1_chrX_102210301_102231795	0/0	t0001	250	34	13	9	6	3	3	copy fasta	TCP11X1	chrX	102210301	102231795
TCP11X1_chrX_102210301_102231795	0/0	t0002	250	2	0	0	2	0	0	copy fasta	TCP11X1	chrX	102210301	102231795
TCP11X1_chrX_102210301_102231795	0/0	t0003	249	1	0	0	1	0	0	copy fasta	TCP11X1	chrX	102210301	102231795
TCP11X2_chrX_102455315_102476812	0/0	t0001	250	134	34	26	56	4	14	copy fasta	TCP11X2	chrX	102455315	102476812
TCP11X2_chrX_102455315_102476812	0/0	t0002	249	1	0	0	1	0	0	copy fasta	TCP11X2	chrX	102455315	102476812
TCP11X2_chrX_102455315_102476812	0/0	t0003	249	1	0	0	0	1	0	copy fasta	TCP11X2	chrX	102455315	102476812
TCP11X2_chrX_102455315_102476812	0/0	t0004	250	1	0	0	1	0	0	copy fasta	TCP11X2	chrX	102455315	102476812
TCP11_chr6_35113075_35146339	0/0	t0001	336	140	10	38	60	9	23	copy fasta	TCP11	chr6	35113075	35146339
TCP11_chr6_35113075_35146339	1/0	t0002	344	120	40	10	56	2	11	copy fasta	TCP11	chr6	35113075	35146339
TCP11_chr6_35113075_35146339	0/1	t0003	343	63	1	6	51	1	3	copy fasta	TCP11	chr6	35113075	35146339
TCP11_chr6_35113075_35146339	0/0	t0004	344	57	20	14	17	1	5	copy fasta	TCP11	chr6	35113075	35146339
TCP11_chr6_35113075_35146339	0/0	t0005	336	15	0	0	15	0	0	copy fasta	TCP11	chr6	35113075	35146339
TCP11_chr6_35113075_35146339	0/0	t0006	336	9	8	1	0	0	0	copy fasta	TCP11	chr6	35113075	35146339
TCP11_chr6_35113075_35146339	0/0	t0007	345	4	0	0	4	0	0	copy fasta	TCP11	chr6	35113075	35146339
TCP11_chr6_35113075_35146339	0/0	t0008	336	2	0	1	0	1	0	copy fasta	TCP11	chr6	35113075	35146339
TCP11_chr6_35113075_35146339	0/0	t0009	344	1	0	0	1	0	0	copy fasta	TCP11	chr6	35113075	35146339
TCP11_chr6_35113075_35146339	0/0	t0010	344	1	1	0	0	0	0	copy fasta	TCP11	chr6	35113075	35146339
TCP1_chr6_159773498_159794602	0/1	t0001	682	150	43	46	34	8	18	copy fasta	TCP1	chr6	159773498	159794602
TCP1_chr6_159773498_159794602	1/0	t0002	682	132	37	11	71	3	9	copy fasta	TCP1	chr6	159773498	159794602
TCP1_chr6_159773498_159794602	0/0	t0003	682	117	13	18	68	3	15	copy fasta	TCP1	chr6	159773498	159794602
TCP1_chr6_159773498_159794602	0/0	t0004	682	2	2	0	0	0	0	copy fasta	TCP1	chr6	159773498	159794602
TCP1_chr6_159773498_159794602	0/0	t0005	682	2	1	1	0	0	0	copy fasta	TCP1	chr6	159773498	159794602
TCP1_chr6_159773498_159794602	0/0	t0006	682	1	0	0	1	0	0	copy fasta	TCP1	chr6	159773498	159794602
TCTA_chr3_49407423_49421476	0/1	t0001	1619	205	35	35	101	5	28	copy fasta	TCTA	chr3	49407423	49421476
TCTA_chr3_49407423_49421476	0/0	t0002	1619	80	19	21	24	8	8	copy fasta	TCTA	chr3	49407423	49421476
TCTA_chr3_49407423_49421476	0/0	t0003	1619	46	27	10	1	5	3	copy fasta	TCTA	chr3	49407423	49421476
TCTA_chr3_49407423_49421476	1/0	t0004	1619	10	9	0	0	0	0	copy fasta	TCTA	chr3	49407423	49421476
TCTA_chr3_49407423_49421476	0/0	t0005	1619	1	0	0	1	0	0	copy fasta	TCTA	chr3	49407423	49421476
TCTA_chr3_49407423_49421476	0/0	t0006	1619	1	0	1	0	0	0	copy fasta	TCTA	chr3	49407423	49421476
TCTA_chr3_49407423_49421476	0/0	t0007	1619	1	0	0	1	0	0	copy fasta	TCTA	chr3	49407423	49421476
TCTA_chr3_49407423_49421476	0/0	t0008	1619	1	0	1	0	0	0	copy fasta	TCTA	chr3	49407423	49421476
TCTA_chr3_49407423_49421476	0/0	t0009	1619	1	1	0	0	0	0	copy fasta	TCTA	chr3	49407423	49421476
TCTA_chr3_49407423_49421476	0/0	t0010	1619	1	0	0	0	0	1	copy fasta	TCTA	chr3	49407423	49421476
TCTA_chr3_49407423_49421476	0/0	t0011	1619	1	1	0	0	0	0	copy fasta	TCTA	chr3	49407423	49421476
TCTE1_chr6_44273734_44302698	0/0	t0001	1579	61	4	8	45	3	1	copy fasta	TCTE1	chr6	44273734	44302698
TCTE1_chr6_44273734_44302698	0/0	t0002	1581	43	4	11	22	3	3	copy fasta	TCTE1	chr6	44273734	44302698
TCTE1_chr6_44273734_44302698	0/0	t0003	1587	26	0	4	16	0	6	copy fasta	TCTE1	chr6	44273734	44302698
TCTE1_chr6_44273734_44302698	0/0	t0004	1583	18	4	5	6	0	3	copy fasta	TCTE1	chr6	44273734	44302698
TCTE1_chr6_44273734_44302698	0/0	t0005	1589	17	1	4	12	0	0	copy fasta	TCTE1	chr6	44273734	44302698
TCTE1_chr6_44273734_44302698	0/0	t0006	1585	14	2	2	8	0	2	copy fasta	TCTE1	chr6	44273734	44302698
TCTE1_chr6_44273734_44302698	0/0	t0007	1583	12	0	5	0	3	4	copy fasta	TCTE1	chr6	44273734	44302698
TCTE1_chr6_44273734_44302698	0/0	t0008	1579	11	10	0	1	0	0	copy fasta	TCTE1	chr6	44273734	44302698
TCTE1_chr6_44273734_44302698	0/0	t0009	1577	11	2	2	5	0	2	copy fasta	TCTE1	chr6	44273734	44302698
TCTE1_chr6_44273734_44302698	0/0	t0010	1585	9	2	2	2	0	3	copy fasta	TCTE1	chr6	44273734	44302698
TCTE1_chr6_44273734_44302698	0/0	t0011	1581	9	0	0	9	0	0	copy fasta	TCTE1	chr6	44273734	44302698
TCTE1_chr6_44273734_44302698	1/0	t0012	1581	8	5	0	1	0	1	copy fasta	TCTE1	chr6	44273734	44302698