JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TDRD15_chr2_21118968_21149368	0/0	t0005	1376	5	5	0	0	0	0	copy fasta	TDRD15	chr2	21118968	21149368
TDRD15_chr2_21118968_21149368	0/0	t0006	1376	2	0	1	0	0	1	copy fasta	TDRD15	chr2	21118968	21149368
TDRD15_chr2_21118968_21149368	0/0	t0007	1376	2	1	1	0	0	0	copy fasta	TDRD15	chr2	21118968	21149368
TDRD15_chr2_21118968_21149368	0/0	t0008	1376	1	0	0	0	0	1	copy fasta	TDRD15	chr2	21118968	21149368
TDRD15_chr2_21118968_21149368	0/0	t0009	1376	1	0	0	0	0	1	copy fasta	TDRD15	chr2	21118968	21149368
TDRD15_chr2_21118968_21149368	0/0	t0010	1376	1	0	0	0	0	1	copy fasta	TDRD15	chr2	21118968	21149368
TDRD15_chr2_21118968_21149368	0/0	t0011	1376	1	0	0	1	0	0	copy fasta	TDRD15	chr2	21118968	21149368
TDRD15_chr2_21118968_21149368	0/0	t0012	1376	1	0	0	1	0	0	copy fasta	TDRD15	chr2	21118968	21149368
TDRD15_chr2_21118968_21149368	0/0	t0013	1376	1	1	0	0	0	0	copy fasta	TDRD15	chr2	21118968	21149368
TDRD15_chr2_21118968_21149368	0/0	t0014	1376	1	0	0	0	0	1	copy fasta	TDRD15	chr2	21118968	21149368
TDRD1_chr10_114174353_114237666	0/0	t0001	4606	73	16	12	37	2	6	copy fasta	TDRD1	chr10	114174353	114237666
TDRD1_chr10_114174353_114237666	0/0	t0002	4607	20	0	1	14	0	5	copy fasta	TDRD1	chr10	114174353	114237666
TDRD1_chr10_114174353_114237666	0/0	t0003	4606	19	9	0	6	1	3	copy fasta	TDRD1	chr10	114174353	114237666
TDRD1_chr10_114174353_114237666	0/0	t0004	4606	17	6	3	3	3	2	copy fasta	TDRD1	chr10	114174353	114237666
TDRD1_chr10_114174353_114237666	0/0	t0005	4605	13	0	4	8	1	0	copy fasta	TDRD1	chr10	114174353	114237666
TDRD1_chr10_114174353_114237666	0/0	t0006	4605	10	0	2	8	0	0	copy fasta	TDRD1	chr10	114174353	114237666
TDRD1_chr10_114174353_114237666	0/0	t0007	4598	9	2	3	1	3	0	copy fasta	TDRD1	chr10	114174353	114237666
TDRD1_chr10_114174353_114237666	0/0	t0008	4605	8	1	2	5	0	0	copy fasta	TDRD1	chr10	114174353	114237666
TDRD1_chr10_114174353_114237666	0/0	t0009	4606	8	1	1	6	0	0	copy fasta	TDRD1	chr10	114174353	114237666
TDRD1_chr10_114174353_114237666	0/0	t0010	4607	7	4	0	3	0	0	copy fasta	TDRD1	chr10	114174353	114237666
TDRD1_chr10_114174353_114237666	0/0	t0011	4596	6	5	1	0	0	0	copy fasta	TDRD1	chr10	114174353	114237666
TDRD1_chr10_114174353_114237666	0/0	t0012	4606	5	0	3	2	0	0	copy fasta	TDRD1	chr10	114174353	114237666
TDRD1_chr10_114174353_114237666	0/0	t0013	4597	5	5	0	0	0	0	copy fasta	TDRD1	chr10	114174353	114237666
TDRD1_chr10_114174353_114237666	0/0	t0014	4608	4	0	0	4	0	0	copy fasta	TDRD1	chr10	114174353	114237666
TDRD1_chr10_114174353_114237666	0/0	t0015	4605	4	1	0	1	0	2	copy fasta	TDRD1	chr10	114174353	114237666
TDRD1_chr10_114174353_114237666	0/0	t0016	4607	4	0	0	4	0	0	copy fasta	TDRD1	chr10	114174353	114237666
TDRD1_chr10_114174353_114237666	0/0	t0017	4607	4	1	1	2	0	0	copy fasta	TDRD1	chr10	114174353	114237666
TDRD1_chr10_114174353_114237666	0/0	t0018	4595	4	1	1	0	1	1	copy fasta	TDRD1	chr10	114174353	114237666
TDRD1_chr10_114174353_114237666	0/0	t0019	4606	4	0	2	0	1	1	copy fasta	TDRD1	chr10	114174353	114237666
TDRD1_chr10_114174353_114237666	0/0	t0020	4606	3	0	3	0	0	0	copy fasta	TDRD1	chr10	114174353	114237666
TDRD1_chr10_114174353_114237666	0/0	t0021	4598	3	0	0	0	0	3	copy fasta	TDRD1	chr10	114174353	114237666
TDRD1_chr10_114174353_114237666	0/0	t0022	4602	2	1	1	0	0	0	copy fasta	TDRD1	chr10	114174353	114237666
TDRD1_chr10_114174353_114237666	1/1	t0023	4607	2	0	0	0	0	0	copy fasta	TDRD1	chr10	114174353	114237666
TDRD1_chr10_114174353_114237666	0/0	t0024	4606	2	0	1	0	0	1	copy fasta	TDRD1	chr10	114174353	114237666
TDRD1_chr10_114174353_114237666	0/0	t0025	4606	2	2	0	0	0	0	copy fasta	TDRD1	chr10	114174353	114237666
TDRD1_chr10_114174353_114237666	0/0	t0026	4605	2	0	0	1	0	1	copy fasta	TDRD1	chr10	114174353	114237666
TDRD1_chr10_114174353_114237666	0/0	t0027	4606	2	2	0	0	0	0	copy fasta	TDRD1	chr10	114174353	114237666
TDRD1_chr10_114174353_114237666	0/0	t0028	4606	2	0	1	1	0	0	copy fasta	TDRD1	chr10	114174353	114237666
TDRD1_chr10_114174353_114237666	0/0	t0029	4608	2	1	0	1	0	0	copy fasta	TDRD1	chr10	114174353	114237666
TDRD1_chr10_114174353_114237666	0/0	t0030	4605	2	2	0	0	0	0	copy fasta	TDRD1	chr10	114174353	114237666
TDRD1_chr10_114174353_114237666	0/0	t0031	4598	2	0	2	0	0	0	copy fasta	TDRD1	chr10	114174353	114237666
TDRD1_chr10_114174353_114237666	0/0	t0032	4594	1	1	0	0	0	0	copy fasta	TDRD1	chr10	114174353	114237666
TDRD1_chr10_114174353_114237666	0/0	t0033	4598	1	1	0	0	0	0	copy fasta	TDRD1	chr10	114174353	114237666
TDRD1_chr10_114174353_114237666	0/0	t0034	4602	1	1	0	0	0	0	copy fasta	TDRD1	chr10	114174353	114237666
TDRD1_chr10_114174353_114237666	0/0	t0035	4602	1	1	0	0	0	0	copy fasta	TDRD1	chr10	114174353	114237666
TDRD1_chr10_114174353_114237666	0/0	t0036	4603	1	1	0	0	0	0	copy fasta	TDRD1	chr10	114174353	114237666
TDRD1_chr10_114174353_114237666	0/0	t0037	4608	1	1	0	0	0	0	copy fasta	TDRD1	chr10	114174353	114237666
TDRD1_chr10_114174353_114237666	0/0	t0038	4631	1	0	1	0	0	0	copy fasta	TDRD1	chr10	114174353	114237666
TDRD1_chr10_114174353_114237666	0/0	t0039	4605	1	1	0	0	0	0	copy fasta	TDRD1	chr10	114174353	114237666
TDRD1_chr10_114174353_114237666	0/0	t0040	4604	1	0	0	0	0	1	copy fasta	TDRD1	chr10	114174353	114237666