JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TDRD1_chr10_114174353_114237666	0/0	t0041	4605	1	1	0	0	0	0	copy fasta	TDRD1	chr10	114174353	114237666
TDRD1_chr10_114174353_114237666	0/0	t0042	4606	1	0	0	1	0	0	copy fasta	TDRD1	chr10	114174353	114237666
TDRD1_chr10_114174353_114237666	0/0	t0043	4606	1	1	0	0	0	0	copy fasta	TDRD1	chr10	114174353	114237666
TDRD1_chr10_114174353_114237666	0/0	t0044	4606	1	1	0	0	0	0	copy fasta	TDRD1	chr10	114174353	114237666
TDRD1_chr10_114174353_114237666	0/0	t0045	4606	1	0	0	1	0	0	copy fasta	TDRD1	chr10	114174353	114237666
TDRD1_chr10_114174353_114237666	0/0	t0046	4606	1	0	0	0	0	1	copy fasta	TDRD1	chr10	114174353	114237666
TDRD1_chr10_114174353_114237666	0/0	t0047	4606	1	0	0	1	0	0	copy fasta	TDRD1	chr10	114174353	114237666
TDRD1_chr10_114174353_114237666	0/0	t0048	4607	1	0	0	1	0	0	copy fasta	TDRD1	chr10	114174353	114237666
TDRD1_chr10_114174353_114237666	0/0	t0049	4606	1	0	1	0	0	0	copy fasta	TDRD1	chr10	114174353	114237666
TDRD1_chr10_114174353_114237666	0/0	t0050	4607	1	0	1	0	0	0	copy fasta	TDRD1	chr10	114174353	114237666
TDRD1_chr10_114174353_114237666	0/0	t0051	4605	1	1	0	0	0	0	copy fasta	TDRD1	chr10	114174353	114237666
TDRD1_chr10_114174353_114237666	0/0	t0052	4606	1	1	0	0	0	0	copy fasta	TDRD1	chr10	114174353	114237666
TDRD1_chr10_114174353_114237666	0/0	t0053	4605	1	1	0	0	0	0	copy fasta	TDRD1	chr10	114174353	114237666
TDRD1_chr10_114174353_114237666	0/0	t0054	4606	1	0	1	0	0	0	copy fasta	TDRD1	chr10	114174353	114237666
TDRD1_chr10_114174353_114237666	0/0	t0055	4605	1	0	1	0	0	0	copy fasta	TDRD1	chr10	114174353	114237666
TDRD1_chr10_114174353_114237666	0/0	t0056	4604	1	1	0	0	0	0	copy fasta	TDRD1	chr10	114174353	114237666
TDRD1_chr10_114174353_114237666	0/0	t0057	4605	1	0	1	0	0	0	copy fasta	TDRD1	chr10	114174353	114237666
TDRD1_chr10_114174353_114237666	0/0	t0058	4607	1	0	0	1	0	0	copy fasta	TDRD1	chr10	114174353	114237666
TDRD1_chr10_114174353_114237666	0/0	t0059	4608	1	1	0	0	0	0	copy fasta	TDRD1	chr10	114174353	114237666
TDRD1_chr10_114174353_114237666	0/0	t0060	4607	1	0	1	0	0	0	copy fasta	TDRD1	chr10	114174353	114237666
TDRD1_chr10_114174353_114237666	0/0	t0061	4606	1	0	0	1	0	0	copy fasta	TDRD1	chr10	114174353	114237666
TDRD1_chr10_114174353_114237666	0/0	t0062	4606	1	0	0	1	0	0	copy fasta	TDRD1	chr10	114174353	114237666
TDRD1_chr10_114174353_114237666	0/0	t0063	4605	1	0	0	1	0	0	copy fasta	TDRD1	chr10	114174353	114237666
TDRD1_chr10_114174353_114237666	0/0	t0064	4606	1	0	0	1	0	0	copy fasta	TDRD1	chr10	114174353	114237666
TDRD1_chr10_114174353_114237666	0/0	t0065	4604	1	0	0	1	0	0	copy fasta	TDRD1	chr10	114174353	114237666
TDRD1_chr10_114174353_114237666	0/0	t0066	4605	1	0	0	1	0	0	copy fasta	TDRD1	chr10	114174353	114237666
TDRD1_chr10_114174353_114237666	0/0	t0067	4605	1	0	1	0	0	0	copy fasta	TDRD1	chr10	114174353	114237666
TDRD1_chr10_114174353_114237666	0/0	t0068	4605	1	0	0	1	0	0	copy fasta	TDRD1	chr10	114174353	114237666
TDRD1_chr10_114174353_114237666	0/0	t0069	4606	1	0	0	0	0	1	copy fasta	TDRD1	chr10	114174353	114237666
TDRD1_chr10_114174353_114237666	0/0	t0070	4598	1	1	0	0	0	0	copy fasta	TDRD1	chr10	114174353	114237666
TDRD1_chr10_114174353_114237666	0/0	t0071	4604	1	0	0	1	0	0	copy fasta	TDRD1	chr10	114174353	114237666
TDRD1_chr10_114174353_114237666	0/0	t0072	4597	1	1	0	0	0	0	copy fasta	TDRD1	chr10	114174353	114237666
TDRD1_chr10_114174353_114237666	0/0	t0073	4598	1	1	0	0	0	0	copy fasta	TDRD1	chr10	114174353	114237666
TDRD1_chr10_114174353_114237666	0/0	t0074	4596	1	1	0	0	0	0	copy fasta	TDRD1	chr10	114174353	114237666
TDRD1_chr10_114174353_114237666	0/0	t0075	4597	1	1	0	0	0	0	copy fasta	TDRD1	chr10	114174353	114237666
TDRD1_chr10_114174353_114237666	0/0	t0076	4602	1	1	0	0	0	0	copy fasta	TDRD1	chr10	114174353	114237666
TDRD1_chr10_114174353_114237666	0/0	t0077	4600	1	0	1	0	0	0	copy fasta	TDRD1	chr10	114174353	114237666
TDRD1_chr10_114174353_114237666	0/0	t0078	4605	1	1	0	0	0	0	copy fasta	TDRD1	chr10	114174353	114237666
TDRD1_chr10_114174353_114237666	0/0	t0079	4620	1	1	0	0	0	0	copy fasta	TDRD1	chr10	114174353	114237666
TDRD1_chr10_114174353_114237666	0/0	t0080	4604	1	1	0	0	0	0	copy fasta	TDRD1	chr10	114174353	114237666
TDRD1_chr10_114174353_114237666	0/0	t0081	4600	1	0	1	0	0	0	copy fasta	TDRD1	chr10	114174353	114237666
TDRD1_chr10_114174353_114237666	0/0	t0082	4606	1	0	1	0	0	0	copy fasta	TDRD1	chr10	114174353	114237666
TDRD1_chr10_114174353_114237666	0/0	t0083	4608	1	0	1	0	0	0	copy fasta	TDRD1	chr10	114174353	114237666
TDRD1_chr10_114174353_114237666	0/0	t0084	4606	1	1	0	0	0	0	copy fasta	TDRD1	chr10	114174353	114237666
TDRD1_chr10_114174353_114237666	0/0	t0085	4605	1	1	0	0	0	0	copy fasta	TDRD1	chr10	114174353	114237666
TDRD3_chr13_60392220_60578871	1/1	t0001	411	174	46	37	49	11	29	copy fasta	TDRD3	chr13	60392220	60578871
TDRD3_chr13_60392220_60578871	0/0	t0002	412	76	14	20	26	4	12	copy fasta	TDRD3	chr13	60392220	60578871
TDRD3_chr13_60392220_60578871	0/0	t0003	398	6	4	2	0	0	0	copy fasta	TDRD3	chr13	60392220	60578871
TDRD3_chr13_60392220_60578871	0/0	t0004	409	4	4	0	0	0	0	copy fasta	TDRD3	chr13	60392220	60578871
TDRD3_chr13_60392220_60578871	0/0	t0005	411	3	1	0	2	0	0	copy fasta	TDRD3	chr13	60392220	60578871