JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TEX28_chrX_154266265_154300124	1/1	t0001	334	14	2	1	7	0	2	copy fasta	TEX28	chrX	154266265	154300124
TEX28_chrX_154266265_154300124	0/0	t0002	333	1	0	0	1	0	0	copy fasta	TEX28	chrX	154266265	154300124
TEX29_chr13_111315642_111349248	1/0	t0001	281	195	46	44	61	9	34	copy fasta	TEX29	chr13	111315642	111349248
TEX29_chr13_111315642_111349248	0/0	t0002	281	154	1	26	116	5	6	copy fasta	TEX29	chr13	111315642	111349248
TEX29_chr13_111315642_111349248	0/1	t0003	281	39	21	7	7	2	1	copy fasta	TEX29	chr13	111315642	111349248
TEX29_chr13_111315642_111349248	0/0	t0004	281	9	9	0	0	0	0	copy fasta	TEX29	chr13	111315642	111349248
TEX29_chr13_111315642_111349248	0/0	t0005	278	5	5	0	0	0	0	copy fasta	TEX29	chr13	111315642	111349248
TEX29_chr13_111315642_111349248	0/0	t0006	281	4	4	0	0	0	0	copy fasta	TEX29	chr13	111315642	111349248
TEX29_chr13_111315642_111349248	0/0	t0007	281	3	0	1	0	0	2	copy fasta	TEX29	chr13	111315642	111349248
TEX29_chr13_111315642_111349248	0/0	t0008	281	3	3	0	0	0	0	copy fasta	TEX29	chr13	111315642	111349248
TEX29_chr13_111315642_111349248	0/0	t0009	281	2	2	0	0	0	0	copy fasta	TEX29	chr13	111315642	111349248
TEX29_chr13_111315642_111349248	0/0	t0010	281	1	0	0	0	0	1	copy fasta	TEX29	chr13	111315642	111349248
TEX29_chr13_111315642_111349248	0/0	t0011	281	1	1	0	0	0	0	copy fasta	TEX29	chr13	111315642	111349248
TEX2_chr17_64142227_64268260	1/1	t0001	1861	205	72	17	77	9	28	copy fasta	TEX2	chr17	64142227	64268260
TEX2_chr17_64142227_64268260	0/0	t0002	1860	7	1	1	2	1	2	copy fasta	TEX2	chr17	64142227	64268260
TEX2_chr17_64142227_64268260	0/0	t0003	1861	3	0	1	2	0	0	copy fasta	TEX2	chr17	64142227	64268260
TEX2_chr17_64142227_64268260	0/0	t0004	1861	3	3	0	0	0	0	copy fasta	TEX2	chr17	64142227	64268260
TEX2_chr17_64142227_64268260	0/0	t0005	1857	3	2	1	0	0	0	copy fasta	TEX2	chr17	64142227	64268260
TEX2_chr17_64142227_64268260	0/0	t0006	1861	1	0	0	1	0	0	copy fasta	TEX2	chr17	64142227	64268260
TEX2_chr17_64142227_64268260	0/0	t0007	1861	1	0	1	0	0	0	copy fasta	TEX2	chr17	64142227	64268260
TEX2_chr17_64142227_64268260	0/0	t0008	1861	1	0	1	0	0	0	copy fasta	TEX2	chr17	64142227	64268260
TEX30_chr13_102760888_102778786	1/1	t0001	679	235	44	60	85	8	36	copy fasta	TEX30	chr13	102760888	102778786
TEX30_chr13_102760888_102778786	0/0	t0002	679	199	43	18	128	4	6	copy fasta	TEX30	chr13	102760888	102778786
TEX30_chr13_102760888_102778786	0/0	t0003	679	6	5	1	0	0	0	copy fasta	TEX30	chr13	102760888	102778786
TEX30_chr13_102760888_102778786	0/0	t0004	679	6	1	3	0	2	0	copy fasta	TEX30	chr13	102760888	102778786
TEX30_chr13_102760888_102778786	0/0	t0005	679	2	0	0	2	0	0	copy fasta	TEX30	chr13	102760888	102778786
TEX30_chr13_102760888_102778786	0/0	t0006	679	2	0	2	0	0	0	copy fasta	TEX30	chr13	102760888	102778786
TEX30_chr13_102760888_102778786	0/0	t0007	679	1	0	0	1	0	0	copy fasta	TEX30	chr13	102760888	102778786
TEX30_chr13_102760888_102778786	0/0	t0008	679	1	1	0	0	0	0	copy fasta	TEX30	chr13	102760888	102778786
TEX30_chr13_102760888_102778786	0/0	t0009	679	1	0	1	0	0	0	copy fasta	TEX30	chr13	102760888	102778786
TEX30_chr13_102760888_102778786	0/0	t0010	679	1	0	1	0	0	0	copy fasta	TEX30	chr13	102760888	102778786
TEX33_chr22_36986125_37012851	1/1	t0001	216	409	89	74	186	18	40	copy fasta	TEX33	chr22	36986125	37012851
TEX33_chr22_36986125_37012851	0/0	t0002	216	9	9	0	0	0	0	copy fasta	TEX33	chr22	36986125	37012851
TEX35_chr1_178508109_178527650	1/1	t0001	291	362	78	68	174	9	31	copy fasta	TEX35	chr1	178508109	178527650
TEX35_chr1_178508109_178527650	0/0	t0002	291	37	16	4	13	1	3	copy fasta	TEX35	chr1	178508109	178527650
TEX35_chr1_178508109_178527650	0/0	t0003	291	1	0	0	1	0	0	copy fasta	TEX35	chr1	178508109	178527650
TEX36_chr10_125650694_125688163	1/1	t0001	381	404	94	76	174	14	44	copy fasta	TEX36	chr10	125650694	125688163
TEX36_chr10_125650694_125688163	0/0	t0002	381	4	4	0	0	0	0	copy fasta	TEX36	chr10	125650694	125688163
TEX36_chr10_125650694_125688163	0/0	t0003	381	1	0	0	1	0	0	copy fasta	TEX36	chr10	125650694	125688163
TEX36_chr10_125650694_125688163	0/0	t0004	381	1	0	0	1	0	0	copy fasta	TEX36	chr10	125650694	125688163
TEX37_chr2_88519649_88534585	1/1	t0001	256	400	91	74	167	16	50	copy fasta	TEX37	chr2	88519649	88534585
TEX37_chr2_88519649_88534585	0/0	t0002	256	1	0	0	1	0	0	copy fasta	TEX37	chr2	88519649	88534585
TEX37_chr2_88519649_88534585	0/0	t0003	256	1	1	0	0	0	0	copy fasta	TEX37	chr2	88519649	88534585
TEX38_chr1_46666854_46678594	1/1	t0001	220	411	87	72	188	16	46	copy fasta	TEX38	chr1	46666854	46678594
TEX38_chr1_46666854_46678594	0/0	t0002	220	7	7	0	0	0	0	copy fasta	TEX38	chr1	46666854	46678594
TEX43_chr5_126626705_126641284	1/1	t0001	74	322	37	72	153	14	44	copy fasta	TEX43	chr5	126626705	126641284
TEX43_chr5_126626705_126641284	0/0	t0002	74	101	51	8	40	0	2	copy fasta	TEX43	chr5	126626705	126641284
TEX43_chr5_126626705_126641284	0/0	t0003	74	1	0	0	1	0	0	copy fasta	TEX43	chr5	126626705	126641284
TEX44_chr2_231587864_231599276	1/1	t0001	226	433	95	75	199	18	44	copy fasta	TEX44	chr2	231587864	231599276
TEX44_chr2_231587864_231599276	0/0	t0002	226	2	2	0	0	0	0	copy fasta	TEX44	chr2	231587864	231599276