JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TGIF1_chr18_3445172_3464978	0/0	t0060	2357	1	0	0	1	0	0	copy fasta	TGIF1	chr18	3445172	3464978
TGIF1_chr18_3445172_3464978	0/0	t0061	2357	1	0	0	0	0	1	copy fasta	TGIF1	chr18	3445172	3464978
TGIF1_chr18_3445172_3464978	0/0	t0062	2356	1	1	0	0	0	0	copy fasta	TGIF1	chr18	3445172	3464978
TGIF1_chr18_3445172_3464978	0/0	t0063	2357	1	0	1	0	0	0	copy fasta	TGIF1	chr18	3445172	3464978
TGIF2LX_chrX_89916908_89927883	1/1	t0001	155	323	76	56	147	13	29	copy fasta	TGIF2LX	chrX	89916908	89927883
TGIF2LY_chrY_3574067_3585041	1/1	t0001	322	130	17	20	70	5	16	copy fasta	TGIF2LY	chrY	3574067	3585041
TGIF2LY_chrY_3574067_3585041	0/0	t0002	323	1	0	0	1	0	0	copy fasta	TGIF2LY	chrY	3574067	3585041
TGIF2_chr20_36568597_36598950	0/1	t0001	2699	236	41	58	98	16	22	copy fasta	TGIF2	chr20	36568597	36598950
TGIF2_chr20_36568597_36598950	0/0	t0002	2699	43	4	1	33	1	4	copy fasta	TGIF2	chr20	36568597	36598950
TGIF2_chr20_36568597_36598950	0/0	t0003	2699	13	13	0	0	0	0	copy fasta	TGIF2	chr20	36568597	36598950
TGIF2_chr20_36568597_36598950	0/0	t0004	2698	9	9	0	0	0	0	copy fasta	TGIF2	chr20	36568597	36598950
TGIF2_chr20_36568597_36598950	0/0	t0005	2699	9	8	1	0	0	0	copy fasta	TGIF2	chr20	36568597	36598950
TGIF2_chr20_36568597_36598950	1/0	t0006	2703	7	0	5	0	0	1	copy fasta	TGIF2	chr20	36568597	36598950
TGIF2_chr20_36568597_36598950	0/0	t0007	2700	4	2	0	2	0	0	copy fasta	TGIF2	chr20	36568597	36598950
TGIF2_chr20_36568597_36598950	0/0	t0008	2698	4	4	0	0	0	0	copy fasta	TGIF2	chr20	36568597	36598950
TGIF2_chr20_36568597_36598950	0/0	t0009	2698	4	1	3	0	0	0	copy fasta	TGIF2	chr20	36568597	36598950
TGIF2_chr20_36568597_36598950	0/0	t0010	2697	4	0	0	4	0	0	copy fasta	TGIF2	chr20	36568597	36598950
TGIF2_chr20_36568597_36598950	0/0	t0011	2687	3	2	1	0	0	0	copy fasta	TGIF2	chr20	36568597	36598950
TGIF2_chr20_36568597_36598950	0/0	t0012	2699	2	0	2	0	0	0	copy fasta	TGIF2	chr20	36568597	36598950
TGIF2_chr20_36568597_36598950	0/0	t0013	2699	2	2	0	0	0	0	copy fasta	TGIF2	chr20	36568597	36598950
TGIF2_chr20_36568597_36598950	0/0	t0014	2699	2	0	1	0	1	0	copy fasta	TGIF2	chr20	36568597	36598950
TGIF2_chr20_36568597_36598950	0/0	t0015	2700	2	0	1	0	0	1	copy fasta	TGIF2	chr20	36568597	36598950
TGIF2_chr20_36568597_36598950	0/0	t0016	2699	2	0	0	0	0	2	copy fasta	TGIF2	chr20	36568597	36598950
TGIF2_chr20_36568597_36598950	0/0	t0017	2698	1	1	0	0	0	0	copy fasta	TGIF2	chr20	36568597	36598950
TGIF2_chr20_36568597_36598950	0/0	t0018	2698	1	1	0	0	0	0	copy fasta	TGIF2	chr20	36568597	36598950
TGIF2_chr20_36568597_36598950	0/0	t0019	2699	1	0	1	0	0	0	copy fasta	TGIF2	chr20	36568597	36598950
TGIF2_chr20_36568597_36598950	0/0	t0020	2700	1	0	0	1	0	0	copy fasta	TGIF2	chr20	36568597	36598950
TGIF2_chr20_36568597_36598950	0/0	t0021	2704	1	1	0	0	0	0	copy fasta	TGIF2	chr20	36568597	36598950
TGIF2_chr20_36568597_36598950	0/0	t0022	2699	1	0	0	1	0	0	copy fasta	TGIF2	chr20	36568597	36598950
TGIF2_chr20_36568597_36598950	0/0	t0023	2699	1	1	0	0	0	0	copy fasta	TGIF2	chr20	36568597	36598950
TGIF2_chr20_36568597_36598950	0/0	t0024	2699	1	1	0	0	0	0	copy fasta	TGIF2	chr20	36568597	36598950
TGIF2_chr20_36568597_36598950	0/0	t0025	2699	1	1	0	0	0	0	copy fasta	TGIF2	chr20	36568597	36598950
TGIF2_chr20_36568597_36598950	0/0	t0026	2699	1	0	0	1	0	0	copy fasta	TGIF2	chr20	36568597	36598950
TGIF2_chr20_36568597_36598950	0/0	t0027	2699	1	0	0	1	0	0	copy fasta	TGIF2	chr20	36568597	36598950
TGIF2_chr20_36568597_36598950	0/0	t0028	2698	1	1	0	0	0	0	copy fasta	TGIF2	chr20	36568597	36598950
TGIF2_chr20_36568597_36598950	0/0	t0029	2692	1	1	0	0	0	0	copy fasta	TGIF2	chr20	36568597	36598950
TGIF2_chr20_36568597_36598950	0/0	t0030	2699	1	1	0	0	0	0	copy fasta	TGIF2	chr20	36568597	36598950
TGIF2_chr20_36568597_36598950	0/0	t0031	2700	1	0	0	1	0	0	copy fasta	TGIF2	chr20	36568597	36598950
TGIF2_chr20_36568597_36598950	0/0	t0032	2698	1	1	0	0	0	0	copy fasta	TGIF2	chr20	36568597	36598950
TGM1_chr14_24244114_24268177	0/1	t0001	269	283	65	63	107	13	34	copy fasta	TGM1	chr14	24244114	24268177
TGM1_chr14_24244114_24268177	0/0	t0002	269	123	24	7	76	3	13	copy fasta	TGM1	chr14	24244114	24268177
TGM1_chr14_24244114_24268177	0/0	t0003	269	8	0	0	8	0	0	copy fasta	TGM1	chr14	24244114	24268177
TGM1_chr14_24244114_24268177	1/0	t0004	291	3	2	0	0	0	0	copy fasta	TGM1	chr14	24244114	24268177
TGM1_chr14_24244114_24268177	0/0	t0005	268	1	0	0	1	0	0	copy fasta	TGM1	chr14	24244114	24268177
TGM1_chr14_24244114_24268177	0/0	t0006	269	1	1	0	0	0	0	copy fasta	TGM1	chr14	24244114	24268177
TGM1_chr14_24244114_24268177	0/0	t0007	269	1	0	0	0	0	1	copy fasta	TGM1	chr14	24244114	24268177
TGM2_chr20_38122385_38170270	1/1	t0001	2907	173	32	43	60	13	23	copy fasta	TGM2	chr20	38122385	38170270
TGM2_chr20_38122385_38170270	0/0	t0002	2907	92	13	12	60	2	5	copy fasta	TGM2	chr20	38122385	38170270
TGM2_chr20_38122385_38170270	0/0	t0003	2912	24	0	0	19	0	5	copy fasta	TGM2	chr20	38122385	38170270
TGM2_chr20_38122385_38170270	0/0	t0004	2907	19	10	2	6	0	1	copy fasta	TGM2	chr20	38122385	38170270