JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
THUMPD3_chr3_9358054_9391791	0/0	t0008	2231	8	8	0	0	0	0	copy fasta	THUMPD3	chr3	9358054	9391791
THUMPD3_chr3_9358054_9391791	0/0	t0009	2231	6	5	1	0	0	0	copy fasta	THUMPD3	chr3	9358054	9391791
THUMPD3_chr3_9358054_9391791	0/0	t0010	2231	5	0	2	0	2	1	copy fasta	THUMPD3	chr3	9358054	9391791
THUMPD3_chr3_9358054_9391791	0/0	t0011	2232	3	2	0	1	0	0	copy fasta	THUMPD3	chr3	9358054	9391791
THUMPD3_chr3_9358054_9391791	0/0	t0012	2231	3	0	0	3	0	0	copy fasta	THUMPD3	chr3	9358054	9391791
THUMPD3_chr3_9358054_9391791	0/0	t0013	2231	3	3	0	0	0	0	copy fasta	THUMPD3	chr3	9358054	9391791
THUMPD3_chr3_9358054_9391791	0/0	t0014	2231	2	1	0	0	1	0	copy fasta	THUMPD3	chr3	9358054	9391791
THUMPD3_chr3_9358054_9391791	0/0	t0015	2231	2	2	0	0	0	0	copy fasta	THUMPD3	chr3	9358054	9391791
THUMPD3_chr3_9358054_9391791	0/0	t0016	2232	2	0	0	2	0	0	copy fasta	THUMPD3	chr3	9358054	9391791
THUMPD3_chr3_9358054_9391791	0/0	t0017	2231	2	0	2	0	0	0	copy fasta	THUMPD3	chr3	9358054	9391791
THUMPD3_chr3_9358054_9391791	0/0	t0018	2230	2	2	0	0	0	0	copy fasta	THUMPD3	chr3	9358054	9391791
THUMPD3_chr3_9358054_9391791	0/0	t0019	2231	2	0	0	2	0	0	copy fasta	THUMPD3	chr3	9358054	9391791
THUMPD3_chr3_9358054_9391791	0/0	t0020	2232	1	0	1	0	0	0	copy fasta	THUMPD3	chr3	9358054	9391791
THUMPD3_chr3_9358054_9391791	0/0	t0021	2231	1	0	0	1	0	0	copy fasta	THUMPD3	chr3	9358054	9391791
THUMPD3_chr3_9358054_9391791	0/0	t0022	2231	1	1	0	0	0	0	copy fasta	THUMPD3	chr3	9358054	9391791
THUMPD3_chr3_9358054_9391791	0/0	t0023	2231	1	0	0	0	0	1	copy fasta	THUMPD3	chr3	9358054	9391791
THUMPD3_chr3_9358054_9391791	0/0	t0024	2231	1	0	0	1	0	0	copy fasta	THUMPD3	chr3	9358054	9391791
THUMPD3_chr3_9358054_9391791	0/0	t0025	2231	1	1	0	0	0	0	copy fasta	THUMPD3	chr3	9358054	9391791
THUMPD3_chr3_9358054_9391791	0/0	t0026	2232	1	0	0	0	0	1	copy fasta	THUMPD3	chr3	9358054	9391791
THUMPD3_chr3_9358054_9391791	0/0	t0027	2232	1	0	0	1	0	0	copy fasta	THUMPD3	chr3	9358054	9391791
THUMPD3_chr3_9358054_9391791	0/0	t0028	2231	1	1	0	0	0	0	copy fasta	THUMPD3	chr3	9358054	9391791
THUMPD3_chr3_9358054_9391791	0/0	t0029	2231	1	0	0	1	0	0	copy fasta	THUMPD3	chr3	9358054	9391791
THUMPD3_chr3_9358054_9391791	0/0	t0030	2231	1	0	1	0	0	0	copy fasta	THUMPD3	chr3	9358054	9391791
THUMPD3_chr3_9358054_9391791	0/0	t0031	2231	1	0	0	1	0	0	copy fasta	THUMPD3	chr3	9358054	9391791
THUMPD3_chr3_9358054_9391791	0/0	t0032	2230	1	1	0	0	0	0	copy fasta	THUMPD3	chr3	9358054	9391791
THUMPD3_chr3_9358054_9391791	0/0	t0033	2230	1	1	0	0	0	0	copy fasta	THUMPD3	chr3	9358054	9391791
THUMPD3_chr3_9358054_9391791	0/0	t0034	2232	1	0	0	1	0	0	copy fasta	THUMPD3	chr3	9358054	9391791
THUMPD3_chr3_9358054_9391791	0/0	t0035	2231	1	1	0	0	0	0	copy fasta	THUMPD3	chr3	9358054	9391791
THUMPD3_chr3_9358054_9391791	0/0	t0036	2231	1	0	0	0	0	1	copy fasta	THUMPD3	chr3	9358054	9391791
THUMPD3_chr3_9358054_9391791	0/0	t0037	2231	1	1	0	0	0	0	copy fasta	THUMPD3	chr3	9358054	9391791
THUMPD3_chr3_9358054_9391791	0/0	t0038	2231	1	1	0	0	0	0	copy fasta	THUMPD3	chr3	9358054	9391791
THUMPD3_chr3_9358054_9391791	0/0	t0039	2231	1	1	0	0	0	0	copy fasta	THUMPD3	chr3	9358054	9391791
THUMPD3_chr3_9358054_9391791	0/0	t0040	2231	1	0	0	1	0	0	copy fasta	THUMPD3	chr3	9358054	9391791
THUMPD3_chr3_9358054_9391791	0/0	t0041	2232	1	0	0	0	0	1	copy fasta	THUMPD3	chr3	9358054	9391791
THY1_chr11_119410476_119428172	0/1	t0001	4017	193	11	37	97	14	33	copy fasta	THY1	chr11	119410476	119428172
THY1_chr11_119410476_119428172	0/0	t0002	4018	47	8	15	21	2	1	copy fasta	THY1	chr11	119410476	119428172
THY1_chr11_119410476_119428172	1/0	t0003	4017	22	9	4	8	0	0	copy fasta	THY1	chr11	119410476	119428172
THY1_chr11_119410476_119428172	0/0	t0004	4017	15	12	3	0	0	0	copy fasta	THY1	chr11	119410476	119428172
THY1_chr11_119410476_119428172	0/0	t0005	4018	13	13	0	0	0	0	copy fasta	THY1	chr11	119410476	119428172
THY1_chr11_119410476_119428172	0/0	t0006	4018	9	9	0	0	0	0	copy fasta	THY1	chr11	119410476	119428172
THY1_chr11_119410476_119428172	0/0	t0007	4017	9	0	0	9	0	0	copy fasta	THY1	chr11	119410476	119428172
THY1_chr11_119410476_119428172	0/0	t0008	4018	7	0	0	7	0	0	copy fasta	THY1	chr11	119410476	119428172
THY1_chr11_119410476_119428172	0/0	t0009	4017	6	0	2	0	1	3	copy fasta	THY1	chr11	119410476	119428172
THY1_chr11_119410476_119428172	0/0	t0010	4018	5	0	5	0	0	0	copy fasta	THY1	chr11	119410476	119428172
THY1_chr11_119410476_119428172	0/0	t0011	4017	5	3	2	0	0	0	copy fasta	THY1	chr11	119410476	119428172
THY1_chr11_119410476_119428172	0/0	t0012	4019	4	0	3	1	0	0	copy fasta	THY1	chr11	119410476	119428172
THY1_chr11_119410476_119428172	0/0	t0013	4017	4	0	0	4	0	0	copy fasta	THY1	chr11	119410476	119428172
THY1_chr11_119410476_119428172	0/0	t0014	4017	4	0	0	4	0	0	copy fasta	THY1	chr11	119410476	119428172
THY1_chr11_119410476_119428172	0/0	t0015	4017	3	3	0	0	0	0	copy fasta	THY1	chr11	119410476	119428172
THY1_chr11_119410476_119428172	0/0	t0016	4018	3	3	0	0	0	0	copy fasta	THY1	chr11	119410476	119428172