JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
THY1_chr11_119410476_119428172	0/0	t0017	4018	3	3	0	0	0	0	copy fasta	THY1	chr11	119410476	119428172
THY1_chr11_119410476_119428172	0/0	t0018	4017	3	0	0	3	0	0	copy fasta	THY1	chr11	119410476	119428172
THY1_chr11_119410476_119428172	0/0	t0019	4018	2	2	0	0	0	0	copy fasta	THY1	chr11	119410476	119428172
THY1_chr11_119410476_119428172	0/0	t0020	4018	2	2	0	0	0	0	copy fasta	THY1	chr11	119410476	119428172
THY1_chr11_119410476_119428172	0/0	t0021	4018	2	2	0	0	0	0	copy fasta	THY1	chr11	119410476	119428172
THY1_chr11_119410476_119428172	0/0	t0022	4018	2	2	0	0	0	0	copy fasta	THY1	chr11	119410476	119428172
THY1_chr11_119410476_119428172	0/0	t0023	4017	1	1	0	0	0	0	copy fasta	THY1	chr11	119410476	119428172
THY1_chr11_119410476_119428172	0/0	t0024	4017	1	1	0	0	0	0	copy fasta	THY1	chr11	119410476	119428172
THY1_chr11_119410476_119428172	0/0	t0025	4018	1	1	0	0	0	0	copy fasta	THY1	chr11	119410476	119428172
THY1_chr11_119410476_119428172	0/0	t0026	4018	1	1	0	0	0	0	copy fasta	THY1	chr11	119410476	119428172
THY1_chr11_119410476_119428172	0/0	t0027	4018	1	0	0	0	1	0	copy fasta	THY1	chr11	119410476	119428172
THY1_chr11_119410476_119428172	0/0	t0028	4018	1	0	0	1	0	0	copy fasta	THY1	chr11	119410476	119428172
THY1_chr11_119410476_119428172	0/0	t0029	4018	1	1	0	0	0	0	copy fasta	THY1	chr11	119410476	119428172
THY1_chr11_119410476_119428172	0/0	t0030	4018	1	0	0	0	0	1	copy fasta	THY1	chr11	119410476	119428172
THY1_chr11_119410476_119428172	0/0	t0031	4018	1	0	0	1	0	0	copy fasta	THY1	chr11	119410476	119428172
THY1_chr11_119410476_119428172	0/0	t0032	4018	1	0	1	0	0	0	copy fasta	THY1	chr11	119410476	119428172
THY1_chr11_119410476_119428172	0/0	t0033	4018	1	1	0	0	0	0	copy fasta	THY1	chr11	119410476	119428172
THY1_chr11_119410476_119428172	0/0	t0034	4017	1	0	0	0	0	1	copy fasta	THY1	chr11	119410476	119428172
THY1_chr11_119410476_119428172	0/0	t0035	4017	1	1	0	0	0	0	copy fasta	THY1	chr11	119410476	119428172
THY1_chr11_119410476_119428172	0/0	t0036	4017	1	0	0	1	0	0	copy fasta	THY1	chr11	119410476	119428172
THY1_chr11_119410476_119428172	0/0	t0037	4017	1	0	0	1	0	0	copy fasta	THY1	chr11	119410476	119428172
THY1_chr11_119410476_119428172	0/0	t0038	4017	1	0	0	1	0	0	copy fasta	THY1	chr11	119410476	119428172
THY1_chr11_119410476_119428172	0/0	t0039	4017	1	0	0	1	0	0	copy fasta	THY1	chr11	119410476	119428172
THY1_chr11_119410476_119428172	0/0	t0040	4017	1	1	0	0	0	0	copy fasta	THY1	chr11	119410476	119428172
THY1_chr11_119410476_119428172	0/0	t0041	4017	1	0	0	0	0	1	copy fasta	THY1	chr11	119410476	119428172
THY1_chr11_119410476_119428172	0/0	t0042	4017	1	1	0	0	0	0	copy fasta	THY1	chr11	119410476	119428172
THY1_chr11_119410476_119428172	0/0	t0043	4018	1	1	0	0	0	0	copy fasta	THY1	chr11	119410476	119428172
THYN1_chr11_134243282_134258352	0/0	t0001	627	447	93	83	210	18	43	copy fasta	THYN1	chr11	134243282	134258352
THYN1_chr11_134243282_134258352	0/0	t0002	627	5	5	0	0	0	0	copy fasta	THYN1	chr11	134243282	134258352
THYN1_chr11_134243282_134258352	0/0	t0003	627	2	0	0	2	0	0	copy fasta	THYN1	chr11	134243282	134258352
THYN1_chr11_134243282_134258352	0/0	t0004	627	1	0	0	1	0	0	copy fasta	THYN1	chr11	134243282	134258352
THYN1_chr11_134243282_134258352	0/0	t0005	627	1	0	0	1	0	0	copy fasta	THYN1	chr11	134243282	134258352
THYN1_chr11_134243282_134258352	0/0	t0006	627	1	0	0	0	0	1	copy fasta	THYN1	chr11	134243282	134258352
THYN1_chr11_134243282_134258352	0/0	t0007	627	1	0	1	0	0	0	copy fasta	THYN1	chr11	134243282	134258352
TH_chr11_2158929_2176815	1/1	t0001	334	382	83	78	158	18	43	copy fasta	TH	chr11	2158929	2176815
TH_chr11_2158929_2176815	0/0	t0002	334	3	3	0	0	0	0	copy fasta	TH	chr11	2158929	2176815
TH_chr11_2158929_2176815	0/0	t0003	334	1	0	0	0	0	1	copy fasta	TH	chr11	2158929	2176815
TH_chr11_2158929_2176815	0/0	t0004	334	1	1	0	0	0	0	copy fasta	TH	chr11	2158929	2176815
TH_chr11_2158929_2176815	0/0	t0005	334	1	1	0	0	0	0	copy fasta	TH	chr11	2158929	2176815
TIA1_chr2_70204444_70253628	1/1	t0001	3474	264	64	35	119	9	35	copy fasta	TIA1	chr2	70204444	70253628
TIA1_chr2_70204444_70253628	0/0	t0002	3474	41	1	7	30	1	2	copy fasta	TIA1	chr2	70204444	70253628
TIA1_chr2_70204444_70253628	0/0	t0003	3475	37	0	18	17	0	2	copy fasta	TIA1	chr2	70204444	70253628
TIA1_chr2_70204444_70253628	0/0	t0004	3474	10	8	2	0	0	0	copy fasta	TIA1	chr2	70204444	70253628
TIA1_chr2_70204444_70253628	0/0	t0005	3476	5	5	0	0	0	0	copy fasta	TIA1	chr2	70204444	70253628
TIA1_chr2_70204444_70253628	0/0	t0006	3475	4	1	1	2	0	0	copy fasta	TIA1	chr2	70204444	70253628
TIA1_chr2_70204444_70253628	0/0	t0007	3475	4	4	0	0	0	0	copy fasta	TIA1	chr2	70204444	70253628
TIA1_chr2_70204444_70253628	0/0	t0008	3476	4	4	0	0	0	0	copy fasta	TIA1	chr2	70204444	70253628
TIA1_chr2_70204444_70253628	0/0	t0009	3474	3	3	0	0	0	0	copy fasta	TIA1	chr2	70204444	70253628
TIA1_chr2_70204444_70253628	0/0	t0010	3474	3	0	3	0	0	0	copy fasta	TIA1	chr2	70204444	70253628
TIA1_chr2_70204444_70253628	0/0	t0011	3474	2	0	0	2	0	0	copy fasta	TIA1	chr2	70204444	70253628