JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TLR7_chrX_12862072_12895361	0/0	t0013	1853	1	1	0	0	0	0	copy fasta	TLR7	chrX	12862072	12895361
TLR7_chrX_12862072_12895361	0/0	t0014	1855	1	0	0	1	0	0	copy fasta	TLR7	chrX	12862072	12895361
TLR7_chrX_12862072_12895361	0/0	t0015	1854	1	0	0	0	0	1	copy fasta	TLR7	chrX	12862072	12895361
TLR7_chrX_12862072_12895361	0/0	t0016	1857	1	0	0	1	0	0	copy fasta	TLR7	chrX	12862072	12895361
TLR7_chrX_12862072_12895361	0/0	t0017	1854	1	1	0	0	0	0	copy fasta	TLR7	chrX	12862072	12895361
TLR8_chrX_12901620_12928169	1/1	t0001	1091	223	31	40	117	7	26	copy fasta	TLR8	chrX	12901620	12928169
TLR8_chrX_12901620_12928169	0/0	t0002	1091	30	5	14	6	1	4	copy fasta	TLR8	chrX	12901620	12928169
TLR8_chrX_12901620_12928169	0/0	t0003	1091	21	19	2	0	0	0	copy fasta	TLR8	chrX	12901620	12928169
TLR8_chrX_12901620_12928169	0/0	t0004	1091	9	9	0	0	0	0	copy fasta	TLR8	chrX	12901620	12928169
TLR8_chrX_12901620_12928169	0/0	t0005	1091	6	4	1	0	1	0	copy fasta	TLR8	chrX	12901620	12928169
TLR8_chrX_12901620_12928169	0/0	t0006	1091	2	2	0	0	0	0	copy fasta	TLR8	chrX	12901620	12928169
TLR8_chrX_12901620_12928169	0/0	t0007	1091	2	1	1	0	0	0	copy fasta	TLR8	chrX	12901620	12928169
TLR8_chrX_12901620_12928169	0/0	t0008	1091	2	0	0	0	0	2	copy fasta	TLR8	chrX	12901620	12928169
TLR8_chrX_12901620_12928169	0/0	t0009	1091	2	2	0	0	0	0	copy fasta	TLR8	chrX	12901620	12928169
TLR8_chrX_12901620_12928169	0/0	t0010	1091	1	0	1	0	0	0	copy fasta	TLR8	chrX	12901620	12928169
TLR8_chrX_12901620_12928169	0/0	t0011	1091	1	0	1	0	0	0	copy fasta	TLR8	chrX	12901620	12928169
TLR8_chrX_12901620_12928169	0/0	t0012	1091	1	1	0	0	0	0	copy fasta	TLR8	chrX	12901620	12928169
TLR8_chrX_12901620_12928169	0/0	t0013	1091	1	1	0	0	0	0	copy fasta	TLR8	chrX	12901620	12928169
TLR8_chrX_12901620_12928169	0/0	t0014	1088	1	0	0	1	0	0	copy fasta	TLR8	chrX	12901620	12928169
TLR8_chrX_12901620_12928169	0/0	t0015	1091	1	1	0	0	0	0	copy fasta	TLR8	chrX	12901620	12928169
TLR9_chr3_52216080_52230645	1/1	t0001	254	371	94	75	146	16	38	copy fasta	TLR9	chr3	52216080	52230645
TLR9_chr3_52216080_52230645	0/0	t0002	254	1	0	1	0	0	0	copy fasta	TLR9	chr3	52216080	52230645
TLX1_chr10_101126300_101142789	0/1	t0001	1119	133	43	25	49	3	12	copy fasta	TLX1	chr10	101126300	101142789
TLX1_chr10_101126300_101142789	1/0	t0002	1119	115	24	21	61	2	6	copy fasta	TLX1	chr10	101126300	101142789
TLX1_chr10_101126300_101142789	0/0	t0003	1119	114	15	16	66	3	14	copy fasta	TLX1	chr10	101126300	101142789
TLX1_chr10_101126300_101142789	0/0	t0004	1119	56	2	9	40	2	3	copy fasta	TLX1	chr10	101126300	101142789
TLX1_chr10_101126300_101142789	0/0	t0005	1119	31	2	14	0	8	7	copy fasta	TLX1	chr10	101126300	101142789
TLX1_chr10_101126300_101142789	0/0	t0006	1119	10	1	2	1	0	6	copy fasta	TLX1	chr10	101126300	101142789
TLX1_chr10_101126300_101142789	0/0	t0007	1119	3	3	0	0	0	0	copy fasta	TLX1	chr10	101126300	101142789
TLX1_chr10_101126300_101142789	0/0	t0008	1119	1	1	0	0	0	0	copy fasta	TLX1	chr10	101126300	101142789
TLX1_chr10_101126300_101142789	0/0	t0009	1119	1	0	0	1	0	0	copy fasta	TLX1	chr10	101126300	101142789
TLX1_chr10_101126300_101142789	0/0	t0010	1119	1	1	0	0	0	0	copy fasta	TLX1	chr10	101126300	101142789
TLX1_chr10_101126300_101142789	0/0	t0011	1119	1	1	0	0	0	0	copy fasta	TLX1	chr10	101126300	101142789
TLX1_chr10_101126300_101142789	0/0	t0012	1119	1	0	1	0	0	0	copy fasta	TLX1	chr10	101126300	101142789
TLX1_chr10_101126300_101142789	0/0	t0013	1119	1	1	0	0	0	0	copy fasta	TLX1	chr10	101126300	101142789
TLX2_chr2_74509450_74522148	1/1	t0001	1317	351	82	71	155	10	31	copy fasta	TLX2	chr2	74509450	74522148
TLX2_chr2_74509450_74522148	0/0	t0002	1317	7	7	0	0	0	0	copy fasta	TLX2	chr2	74509450	74522148
TLX2_chr2_74509450_74522148	0/0	t0003	1317	4	4	0	0	0	0	copy fasta	TLX2	chr2	74509450	74522148
TLX2_chr2_74509450_74522148	0/0	t0004	1317	2	0	0	2	0	0	copy fasta	TLX2	chr2	74509450	74522148
TLX2_chr2_74509450_74522148	0/0	t0005	1317	1	0	0	1	0	0	copy fasta	TLX2	chr2	74509450	74522148
TLX2_chr2_74509450_74522148	0/0	t0006	1317	1	0	0	0	0	1	copy fasta	TLX2	chr2	74509450	74522148
TLX2_chr2_74509450_74522148	0/0	t0007	1317	1	1	0	0	0	0	copy fasta	TLX2	chr2	74509450	74522148
TLX2_chr2_74509450_74522148	0/0	t0008	1317	1	1	0	0	0	0	copy fasta	TLX2	chr2	74509450	74522148
TLX2_chr2_74509450_74522148	0/0	t0009	1317	1	1	0	0	0	0	copy fasta	TLX2	chr2	74509450	74522148
TLX2_chr2_74509450_74522148	0/0	t0010	1317	1	0	0	1	0	0	copy fasta	TLX2	chr2	74509450	74522148
TLX2_chr2_74509450_74522148	0/0	t0011	1317	1	0	1	0	0	0	copy fasta	TLX2	chr2	74509450	74522148
TLX2_chr2_74509450_74522148	0/0	t0012	1317	1	0	0	1	0	0	copy fasta	TLX2	chr2	74509450	74522148
TLX3_chr5_171304248_171317139	0/1	t0001	659	227	22	45	125	6	28	copy fasta	TLX3	chr5	171304248	171317139
TLX3_chr5_171304248_171317139	1/0	t0002	659	160	60	33	44	9	13	copy fasta	TLX3	chr5	171304248	171317139
TLX3_chr5_171304248_171317139	0/0	t0003	659	9	7	2	0	0	0	copy fasta	TLX3	chr5	171304248	171317139