JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TLX3_chr5_171304248_171317139	0/0	t0004	659	2	2	0	0	0	0	copy fasta	TLX3	chr5	171304248	171317139
TLX3_chr5_171304248_171317139	0/0	t0005	659	1	0	0	1	0	0	copy fasta	TLX3	chr5	171304248	171317139
TLX3_chr5_171304248_171317139	0/0	t0006	671	1	0	0	0	0	1	copy fasta	TLX3	chr5	171304248	171317139
TLX3_chr5_171304248_171317139	0/0	t0007	659	1	1	0	0	0	0	copy fasta	TLX3	chr5	171304248	171317139
TLX3_chr5_171304248_171317139	0/0	t0008	659	1	0	0	0	1	0	copy fasta	TLX3	chr5	171304248	171317139
TM2D1_chr1_61676046_61730141	1/1	t0001	346	343	55	64	166	14	42	copy fasta	TM2D1	chr1	61676046	61730141
TM2D1_chr1_61676046_61730141	0/0	t0002	346	23	20	3	0	0	0	copy fasta	TM2D1	chr1	61676046	61730141
TM2D1_chr1_61676046_61730141	0/0	t0003	344	18	16	2	0	0	0	copy fasta	TM2D1	chr1	61676046	61730141
TM2D1_chr1_61676046_61730141	0/0	t0004	346	3	3	0	0	0	0	copy fasta	TM2D1	chr1	61676046	61730141
TM2D1_chr1_61676046_61730141	0/0	t0005	346	1	0	1	0	0	0	copy fasta	TM2D1	chr1	61676046	61730141
TM2D2_chr8_38983808_39001509	0/0	t0001	2595	198	14	43	120	7	14	copy fasta	TM2D2	chr8	38983808	39001509
TM2D2_chr8_38983808_39001509	0/0	t0002	2595	114	16	24	52	6	16	copy fasta	TM2D2	chr8	38983808	39001509
TM2D2_chr8_38983808_39001509	1/1	t0003	2595	54	12	7	19	2	12	copy fasta	TM2D2	chr8	38983808	39001509
TM2D2_chr8_38983808_39001509	0/0	t0004	2598	12	12	0	0	0	0	copy fasta	TM2D2	chr8	38983808	39001509
TM2D2_chr8_38983808_39001509	0/0	t0005	2595	10	10	0	0	0	0	copy fasta	TM2D2	chr8	38983808	39001509
TM2D2_chr8_38983808_39001509	0/0	t0006	2595	5	4	1	0	0	0	copy fasta	TM2D2	chr8	38983808	39001509
TM2D2_chr8_38983808_39001509	0/0	t0007	2595	5	5	0	0	0	0	copy fasta	TM2D2	chr8	38983808	39001509
TM2D2_chr8_38983808_39001509	0/0	t0008	2595	3	3	0	0	0	0	copy fasta	TM2D2	chr8	38983808	39001509
TM2D2_chr8_38983808_39001509	0/0	t0009	2595	3	3	0	0	0	0	copy fasta	TM2D2	chr8	38983808	39001509
TM2D2_chr8_38983808_39001509	0/0	t0010	2595	3	0	2	0	1	0	copy fasta	TM2D2	chr8	38983808	39001509
TM2D2_chr8_38983808_39001509	0/0	t0011	2595	3	0	0	3	0	0	copy fasta	TM2D2	chr8	38983808	39001509
TM2D2_chr8_38983808_39001509	0/0	t0012	2595	2	0	0	0	0	2	copy fasta	TM2D2	chr8	38983808	39001509
TM2D2_chr8_38983808_39001509	0/0	t0013	2595	2	2	0	0	0	0	copy fasta	TM2D2	chr8	38983808	39001509
TM2D2_chr8_38983808_39001509	0/0	t0014	2595	2	2	0	0	0	0	copy fasta	TM2D2	chr8	38983808	39001509
TM2D2_chr8_38983808_39001509	0/0	t0015	2595	1	1	0	0	0	0	copy fasta	TM2D2	chr8	38983808	39001509
TM2D2_chr8_38983808_39001509	0/0	t0016	2595	1	1	0	0	0	0	copy fasta	TM2D2	chr8	38983808	39001509
TM2D2_chr8_38983808_39001509	0/0	t0017	2595	1	0	0	1	0	0	copy fasta	TM2D2	chr8	38983808	39001509
TM2D2_chr8_38983808_39001509	0/0	t0018	2595	1	1	0	0	0	0	copy fasta	TM2D2	chr8	38983808	39001509
TM2D2_chr8_38983808_39001509	0/0	t0019	2595	1	1	0	0	0	0	copy fasta	TM2D2	chr8	38983808	39001509
TM2D2_chr8_38983808_39001509	0/0	t0020	2595	1	1	0	0	0	0	copy fasta	TM2D2	chr8	38983808	39001509
TM2D2_chr8_38983808_39001509	0/0	t0021	2595	1	1	0	0	0	0	copy fasta	TM2D2	chr8	38983808	39001509
TM2D2_chr8_38983808_39001509	0/0	t0022	2595	1	1	0	0	0	0	copy fasta	TM2D2	chr8	38983808	39001509
TM2D2_chr8_38983808_39001509	0/0	t0023	2595	1	1	0	0	0	0	copy fasta	TM2D2	chr8	38983808	39001509
TM2D2_chr8_38983808_39001509	0/0	t0024	2595	1	1	0	0	0	0	copy fasta	TM2D2	chr8	38983808	39001509
TM2D2_chr8_38983808_39001509	0/0	t0025	2595	1	1	0	0	0	0	copy fasta	TM2D2	chr8	38983808	39001509
TM2D2_chr8_38983808_39001509	0/0	t0026	2595	1	1	0	0	0	0	copy fasta	TM2D2	chr8	38983808	39001509
TM2D2_chr8_38983808_39001509	0/0	t0027	2595	1	0	0	1	0	0	copy fasta	TM2D2	chr8	38983808	39001509
TM2D2_chr8_38983808_39001509	0/0	t0028	2595	1	0	1	0	0	0	copy fasta	TM2D2	chr8	38983808	39001509
TM2D2_chr8_38983808_39001509	0/0	t0029	2595	1	0	0	0	0	1	copy fasta	TM2D2	chr8	38983808	39001509
TM2D2_chr8_38983808_39001509	0/0	t0030	2595	1	0	0	0	0	1	copy fasta	TM2D2	chr8	38983808	39001509
TM2D3_chr15_101636848_101657381	1/1	t0001	652	376	78	67	179	12	38	copy fasta	TM2D3	chr15	101636848	101657381
TM2D3_chr15_101636848_101657381	0/0	t0002	652	36	13	13	0	4	6	copy fasta	TM2D3	chr15	101636848	101657381
TM2D3_chr15_101636848_101657381	0/0	t0003	652	3	3	0	0	0	0	copy fasta	TM2D3	chr15	101636848	101657381
TM2D3_chr15_101636848_101657381	0/0	t0004	652	3	2	1	0	0	0	copy fasta	TM2D3	chr15	101636848	101657381
TM2D3_chr15_101636848_101657381	0/0	t0005	652	2	2	0	0	0	0	copy fasta	TM2D3	chr15	101636848	101657381
TM2D3_chr15_101636848_101657381	0/0	t0006	652	1	0	0	1	0	0	copy fasta	TM2D3	chr15	101636848	101657381
TM2D3_chr15_101636848_101657381	0/0	t0007	652	1	0	1	0	0	0	copy fasta	TM2D3	chr15	101636848	101657381
TM4SF18_chr3_149313498_149338636	0/0	t0001	3122	217	30	30	121	9	27	copy fasta	TM4SF18	chr3	149313498	149338636
TM4SF18_chr3_149313498_149338636	0/1	t0002	3122	53	16	19	7	5	5	copy fasta	TM4SF18	chr3	149313498	149338636
TM4SF18_chr3_149313498_149338636	0/0	t0003	3122	50	0	7	42	0	1	copy fasta	TM4SF18	chr3	149313498	149338636