JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TNFRSF21_chr6_47226532_47314905	0/0	t0035	1630	1	1	0	0	0	0	copy fasta	TNFRSF21	chr6	47226532	47314905
TNFRSF21_chr6_47226532_47314905	0/0	t0036	1628	1	1	0	0	0	0	copy fasta	TNFRSF21	chr6	47226532	47314905
TNFRSF21_chr6_47226532_47314905	0/0	t0037	1632	1	0	1	0	0	0	copy fasta	TNFRSF21	chr6	47226532	47314905
TNFRSF21_chr6_47226532_47314905	0/0	t0038	1628	1	1	0	0	0	0	copy fasta	TNFRSF21	chr6	47226532	47314905
TNFRSF21_chr6_47226532_47314905	0/0	t0039	1626	1	0	1	0	0	0	copy fasta	TNFRSF21	chr6	47226532	47314905
TNFRSF21_chr6_47226532_47314905	0/0	t0040	1621	1	0	0	0	0	1	copy fasta	TNFRSF21	chr6	47226532	47314905
TNFRSF21_chr6_47226532_47314905	0/0	t0041	1626	1	1	0	0	0	0	copy fasta	TNFRSF21	chr6	47226532	47314905
TNFRSF21_chr6_47226532_47314905	0/0	t0042	1622	1	1	0	0	0	0	copy fasta	TNFRSF21	chr6	47226532	47314905
TNFRSF21_chr6_47226532_47314905	0/0	t0043	1612	1	1	0	0	0	0	copy fasta	TNFRSF21	chr6	47226532	47314905
TNFRSF21_chr6_47226532_47314905	0/0	t0044	1640	1	0	0	1	0	0	copy fasta	TNFRSF21	chr6	47226532	47314905
TNFRSF21_chr6_47226532_47314905	0/0	t0045	1628	1	1	0	0	0	0	copy fasta	TNFRSF21	chr6	47226532	47314905
TNFRSF21_chr6_47226532_47314905	0/0	t0046	1628	1	0	1	0	0	0	copy fasta	TNFRSF21	chr6	47226532	47314905
TNFRSF21_chr6_47226532_47314905	0/0	t0047	1628	1	0	0	1	0	0	copy fasta	TNFRSF21	chr6	47226532	47314905
TNFRSF21_chr6_47226532_47314905	0/0	t0048	1624	1	1	0	0	0	0	copy fasta	TNFRSF21	chr6	47226532	47314905
TNFRSF21_chr6_47226532_47314905	0/0	t0049	1626	1	0	1	0	0	0	copy fasta	TNFRSF21	chr6	47226532	47314905
TNFRSF21_chr6_47226532_47314905	0/0	t0050	1628	1	1	0	0	0	0	copy fasta	TNFRSF21	chr6	47226532	47314905
TNFRSF21_chr6_47226532_47314905	0/0	t0051	1626	1	1	0	0	0	0	copy fasta	TNFRSF21	chr6	47226532	47314905
TNFRSF21_chr6_47226532_47314905	0/0	t0052	1621	1	0	1	0	0	0	copy fasta	TNFRSF21	chr6	47226532	47314905
TNFRSF25_chr1_6455786_6471173	1/1	t0001	715	206	13	57	91	10	33	copy fasta	TNFRSF25	chr1	6455786	6471173
TNFRSF25_chr1_6455786_6471173	0/0	t0002	707	49	40	5	0	2	2	copy fasta	TNFRSF25	chr1	6455786	6471173
TNFRSF25_chr1_6455786_6471173	0/0	t0003	715	36	21	8	5	0	2	copy fasta	TNFRSF25	chr1	6455786	6471173
TNFRSF25_chr1_6455786_6471173	0/0	t0004	710	11	10	1	0	0	0	copy fasta	TNFRSF25	chr1	6455786	6471173
TNFRSF25_chr1_6455786_6471173	0/0	t0005	707	9	8	1	0	0	0	copy fasta	TNFRSF25	chr1	6455786	6471173
TNFRSF25_chr1_6455786_6471173	0/0	t0006	715	5	0	2	0	2	1	copy fasta	TNFRSF25	chr1	6455786	6471173
TNFRSF25_chr1_6455786_6471173	0/0	t0007	715	1	1	0	0	0	0	copy fasta	TNFRSF25	chr1	6455786	6471173
TNFRSF25_chr1_6455786_6471173	0/0	t0008	715	1	0	0	1	0	0	copy fasta	TNFRSF25	chr1	6455786	6471173
TNFRSF25_chr1_6455786_6471173	0/0	t0009	715	1	1	0	0	0	0	copy fasta	TNFRSF25	chr1	6455786	6471173
TNFRSF25_chr1_6455786_6471173	0/0	t0010	715	1	0	0	1	0	0	copy fasta	TNFRSF25	chr1	6455786	6471173
TNFRSF25_chr1_6455786_6471173	0/0	t0011	715	1	1	0	0	0	0	copy fasta	TNFRSF25	chr1	6455786	6471173
TNFRSF25_chr1_6455786_6471173	0/0	t0012	707	1	1	0	0	0	0	copy fasta	TNFRSF25	chr1	6455786	6471173
TNFRSF4_chr1_1206340_1219153	1/1	t0001	242	365	96	63	148	17	39	copy fasta	TNFRSF4	chr1	1206340	1219153
TNFRSF4_chr1_1206340_1219153	0/0	t0002	242	34	0	0	32	1	1	copy fasta	TNFRSF4	chr1	1206340	1219153
TNFRSF4_chr1_1206340_1219153	0/0	t0003	242	2	2	0	0	0	0	copy fasta	TNFRSF4	chr1	1206340	1219153
TNFRSF4_chr1_1206340_1219153	0/0	t0004	256	1	0	0	1	0	0	copy fasta	TNFRSF4	chr1	1206340	1219153
TNFRSF4_chr1_1206340_1219153	0/0	t0005	242	1	0	1	0	0	0	copy fasta	TNFRSF4	chr1	1206340	1219153
TNFRSF4_chr1_1206340_1219153	0/0	t0006	242	1	1	0	0	0	0	copy fasta	TNFRSF4	chr1	1206340	1219153
TNFRSF4_chr1_1206340_1219153	0/0	t0007	242	1	1	0	0	0	0	copy fasta	TNFRSF4	chr1	1206340	1219153
TNFRSF4_chr1_1206340_1219153	0/0	t0008	242	1	0	0	1	0	0	copy fasta	TNFRSF4	chr1	1206340	1219153
TNFRSF6B_chr20_63691652_63703684	1/0	t0001	238	29	13	7	2	2	4	copy fasta	TNFRSF6B	chr20	63691652	63703684
TNFRSF6B_chr20_63691652_63703684	0/0	t0002	237	4	3	1	0	0	0	copy fasta	TNFRSF6B	chr20	63691652	63703684
TNFRSF8_chr1_12058303_12149207	1/0	t0001	1973	289	42	61	132	14	39	copy fasta	TNFRSF8	chr1	12058303	12149207
TNFRSF8_chr1_12058303_12149207	0/0	t0002	1973	11	11	0	0	0	0	copy fasta	TNFRSF8	chr1	12058303	12149207
TNFRSF8_chr1_12058303_12149207	0/0	t0003	1975	7	7	0	0	0	0	copy fasta	TNFRSF8	chr1	12058303	12149207
TNFRSF8_chr1_12058303_12149207	0/0	t0004	1973	7	2	2	2	0	1	copy fasta	TNFRSF8	chr1	12058303	12149207
TNFRSF8_chr1_12058303_12149207	0/0	t0005	1973	6	6	0	0	0	0	copy fasta	TNFRSF8	chr1	12058303	12149207
TNFRSF8_chr1_12058303_12149207	0/0	t0006	1973	6	6	0	0	0	0	copy fasta	TNFRSF8	chr1	12058303	12149207
TNFRSF8_chr1_12058303_12149207	0/0	t0007	1973	5	5	0	0	0	0	copy fasta	TNFRSF8	chr1	12058303	12149207
TNFRSF8_chr1_12058303_12149207	0/0	t0008	1973	5	0	0	5	0	0	copy fasta	TNFRSF8	chr1	12058303	12149207
TNFRSF8_chr1_12058303_12149207	0/0	t0009	1973	4	4	0	0	0	0	copy fasta	TNFRSF8	chr1	12058303	12149207
TNFRSF8_chr1_12058303_12149207	0/0	t0010	1973	3	3	0	0	0	0	copy fasta	TNFRSF8	chr1	12058303	12149207