JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TNRC18_chr7_5301811_5428834	0/0	t0027	1935	1	0	0	0	0	1	copy fasta	TNRC18	chr7	5301811	5428834
TNRC18_chr7_5301811_5428834	0/0	t0028	1934	1	0	1	0	0	0	copy fasta	TNRC18	chr7	5301811	5428834
TNRC18_chr7_5301811_5428834	0/0	t0029	1935	1	0	0	1	0	0	copy fasta	TNRC18	chr7	5301811	5428834
TNRC18_chr7_5301811_5428834	0/0	t0030	1935	1	0	0	0	0	1	copy fasta	TNRC18	chr7	5301811	5428834
TNRC18_chr7_5301811_5428834	0/0	t0031	1934	1	0	0	0	1	0	copy fasta	TNRC18	chr7	5301811	5428834
TNRC18_chr7_5301811_5428834	0/0	t0032	1935	1	0	0	1	0	0	copy fasta	TNRC18	chr7	5301811	5428834
TNRC18_chr7_5301811_5428834	0/0	t0033	1933	1	0	0	1	0	0	copy fasta	TNRC18	chr7	5301811	5428834
TNRC18_chr7_5301811_5428834	0/0	t0034	1935	1	0	0	1	0	0	copy fasta	TNRC18	chr7	5301811	5428834
TNRC18_chr7_5301811_5428834	0/0	t0035	1934	1	1	0	0	0	0	copy fasta	TNRC18	chr7	5301811	5428834
TNRC18_chr7_5301811_5428834	0/0	t0036	1934	1	0	1	0	0	0	copy fasta	TNRC18	chr7	5301811	5428834
TNRC18_chr7_5301811_5428834	0/0	t0037	1935	1	1	0	0	0	0	copy fasta	TNRC18	chr7	5301811	5428834
TNRC18_chr7_5301811_5428834	0/0	t0038	1934	1	1	0	0	0	0	copy fasta	TNRC18	chr7	5301811	5428834
TNRC18_chr7_5301811_5428834	0/0	t0039	1936	1	0	1	0	0	0	copy fasta	TNRC18	chr7	5301811	5428834
TNRC18_chr7_5301811_5428834	0/0	t0040	1935	1	0	1	0	0	0	copy fasta	TNRC18	chr7	5301811	5428834
TNRC18_chr7_5301811_5428834	0/0	t0041	1909	1	0	0	0	0	1	copy fasta	TNRC18	chr7	5301811	5428834
TNRC18_chr7_5301811_5428834	0/0	t0042	1934	1	0	0	1	0	0	copy fasta	TNRC18	chr7	5301811	5428834
TNRC18_chr7_5301811_5428834	0/0	t0043	1934	1	1	0	0	0	0	copy fasta	TNRC18	chr7	5301811	5428834
TNRC18_chr7_5301811_5428834	0/0	t0044	1934	1	0	0	1	0	0	copy fasta	TNRC18	chr7	5301811	5428834
TNRC6A_chr16_24724651_24831218	0/0	t0001	2602	34	1	7	25	0	1	copy fasta	TNRC6A	chr16	24724651	24831218
TNRC6A_chr16_24724651_24831218	0/0	t0002	2607	33	2	7	22	0	2	copy fasta	TNRC6A	chr16	24724651	24831218
TNRC6A_chr16_24724651_24831218	0/0	t0003	2606	22	4	2	15	1	0	copy fasta	TNRC6A	chr16	24724651	24831218
TNRC6A_chr16_24724651_24831218	0/0	t0004	2601	18	2	1	14	0	1	copy fasta	TNRC6A	chr16	24724651	24831218
TNRC6A_chr16_24724651_24831218	0/0	t0005	2604	17	7	1	8	0	1	copy fasta	TNRC6A	chr16	24724651	24831218
TNRC6A_chr16_24724651_24831218	0/0	t0006	2607	16	0	4	9	0	3	copy fasta	TNRC6A	chr16	24724651	24831218
TNRC6A_chr16_24724651_24831218	0/0	t0007	2605	9	0	2	2	0	5	copy fasta	TNRC6A	chr16	24724651	24831218
TNRC6A_chr16_24724651_24831218	0/0	t0008	2606	8	5	2	0	0	1	copy fasta	TNRC6A	chr16	24724651	24831218
TNRC6A_chr16_24724651_24831218	0/0	t0009	2602	7	1	2	0	2	2	copy fasta	TNRC6A	chr16	24724651	24831218
TNRC6A_chr16_24724651_24831218	0/0	t0010	2599	7	7	0	0	0	0	copy fasta	TNRC6A	chr16	24724651	24831218
TNRC6A_chr16_24724651_24831218	0/0	t0011	2606	7	2	4	1	0	0	copy fasta	TNRC6A	chr16	24724651	24831218
TNRC6A_chr16_24724651_24831218	0/0	t0012	2601	6	3	1	0	1	1	copy fasta	TNRC6A	chr16	24724651	24831218
TNRC6A_chr16_24724651_24831218	0/0	t0013	2602	5	1	2	1	1	0	copy fasta	TNRC6A	chr16	24724651	24831218
TNRC6A_chr16_24724651_24831218	0/0	t0014	2603	5	4	1	0	0	0	copy fasta	TNRC6A	chr16	24724651	24831218
TNRC6A_chr16_24724651_24831218	0/0	t0015	2601	5	0	1	3	0	1	copy fasta	TNRC6A	chr16	24724651	24831218
TNRC6A_chr16_24724651_24831218	0/0	t0016	2600	5	3	0	2	0	0	copy fasta	TNRC6A	chr16	24724651	24831218
TNRC6A_chr16_24724651_24831218	0/0	t0017	2607	5	5	0	0	0	0	copy fasta	TNRC6A	chr16	24724651	24831218
TNRC6A_chr16_24724651_24831218	0/0	t0018	2605	5	2	1	2	0	0	copy fasta	TNRC6A	chr16	24724651	24831218
TNRC6A_chr16_24724651_24831218	1/0	t0019	2603	5	1	1	0	1	1	copy fasta	TNRC6A	chr16	24724651	24831218
TNRC6A_chr16_24724651_24831218	0/0	t0020	2608	5	2	1	2	0	0	copy fasta	TNRC6A	chr16	24724651	24831218
TNRC6A_chr16_24724651_24831218	0/0	t0021	2607	4	0	1	3	0	0	copy fasta	TNRC6A	chr16	24724651	24831218
TNRC6A_chr16_24724651_24831218	0/0	t0022	2606	4	0	1	3	0	0	copy fasta	TNRC6A	chr16	24724651	24831218
TNRC6A_chr16_24724651_24831218	0/0	t0023	2605	4	0	2	1	0	1	copy fasta	TNRC6A	chr16	24724651	24831218
TNRC6A_chr16_24724651_24831218	0/0	t0024	2601	3	0	1	1	0	1	copy fasta	TNRC6A	chr16	24724651	24831218
TNRC6A_chr16_24724651_24831218	0/0	t0025	2599	3	3	0	0	0	0	copy fasta	TNRC6A	chr16	24724651	24831218
TNRC6A_chr16_24724651_24831218	0/0	t0026	2602	3	2	0	1	0	0	copy fasta	TNRC6A	chr16	24724651	24831218
TNRC6A_chr16_24724651_24831218	0/0	t0027	2603	3	0	0	0	0	3	copy fasta	TNRC6A	chr16	24724651	24831218
TNRC6A_chr16_24724651_24831218	0/0	t0028	2605	3	1	0	2	0	0	copy fasta	TNRC6A	chr16	24724651	24831218
TNRC6A_chr16_24724651_24831218	0/1	t0029	2620	3	0	1	0	1	0	copy fasta	TNRC6A	chr16	24724651	24831218
TNRC6A_chr16_24724651_24831218	0/0	t0030	2593	2	1	0	1	0	0	copy fasta	TNRC6A	chr16	24724651	24831218
TNRC6A_chr16_24724651_24831218	0/0	t0031	2600	2	0	1	1	0	0	copy fasta	TNRC6A	chr16	24724651	24831218
TNRC6A_chr16_24724651_24831218	0/0	t0032	2604	2	1	0	0	0	1	copy fasta	TNRC6A	chr16	24724651	24831218