JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TNRC6A_chr16_24724651_24831218	0/0	t0083	2604	1	0	1	0	0	0	copy fasta	TNRC6A	chr16	24724651	24831218
TNRC6A_chr16_24724651_24831218	0/0	t0084	2610	1	0	0	1	0	0	copy fasta	TNRC6A	chr16	24724651	24831218
TNRC6A_chr16_24724651_24831218	0/0	t0085	2609	1	0	1	0	0	0	copy fasta	TNRC6A	chr16	24724651	24831218
TNRC6A_chr16_24724651_24831218	0/0	t0086	2608	1	1	0	0	0	0	copy fasta	TNRC6A	chr16	24724651	24831218
TNRC6A_chr16_24724651_24831218	0/0	t0087	2605	1	1	0	0	0	0	copy fasta	TNRC6A	chr16	24724651	24831218
TNRC6A_chr16_24724651_24831218	0/0	t0088	2608	1	1	0	0	0	0	copy fasta	TNRC6A	chr16	24724651	24831218
TNRC6A_chr16_24724651_24831218	0/0	t0089	2607	1	0	0	1	0	0	copy fasta	TNRC6A	chr16	24724651	24831218
TNRC6A_chr16_24724651_24831218	0/0	t0090	2607	1	0	0	1	0	0	copy fasta	TNRC6A	chr16	24724651	24831218
TNRC6A_chr16_24724651_24831218	0/0	t0091	2606	1	0	0	1	0	0	copy fasta	TNRC6A	chr16	24724651	24831218
TNRC6A_chr16_24724651_24831218	0/0	t0092	2610	1	1	0	0	0	0	copy fasta	TNRC6A	chr16	24724651	24831218
TNRC6A_chr16_24724651_24831218	0/0	t0093	2631	1	1	0	0	0	0	copy fasta	TNRC6A	chr16	24724651	24831218
TNRC6A_chr16_24724651_24831218	0/0	t0094	2630	1	1	0	0	0	0	copy fasta	TNRC6A	chr16	24724651	24831218
TNRC6A_chr16_24724651_24831218	0/0	t0095	2624	1	1	0	0	0	0	copy fasta	TNRC6A	chr16	24724651	24831218
TNRC6A_chr16_24724651_24831218	0/0	t0096	2622	1	0	0	1	0	0	copy fasta	TNRC6A	chr16	24724651	24831218
TNRC6A_chr16_24724651_24831218	0/0	t0097	2621	1	0	0	1	0	0	copy fasta	TNRC6A	chr16	24724651	24831218
TNRC6A_chr16_24724651_24831218	0/0	t0098	2625	1	0	0	1	0	0	copy fasta	TNRC6A	chr16	24724651	24831218
TNRC6A_chr16_24724651_24831218	0/0	t0099	2628	1	0	0	1	0	0	copy fasta	TNRC6A	chr16	24724651	24831218
TNRC6A_chr16_24724651_24831218	0/0	t0100	2631	1	1	0	0	0	0	copy fasta	TNRC6A	chr16	24724651	24831218
TNRC6A_chr16_24724651_24831218	0/0	t0101	2614	1	0	1	0	0	0	copy fasta	TNRC6A	chr16	24724651	24831218
TNRC6A_chr16_24724651_24831218	0/0	t0102	2612	1	0	0	0	1	0	copy fasta	TNRC6A	chr16	24724651	24831218
TNRC6A_chr16_24724651_24831218	0/0	t0103	2595	1	0	0	1	0	0	copy fasta	TNRC6A	chr16	24724651	24831218
TNRC6A_chr16_24724651_24831218	0/0	t0104	2594	1	0	0	1	0	0	copy fasta	TNRC6A	chr16	24724651	24831218
TNRC6A_chr16_24724651_24831218	0/0	t0105	2601	1	0	1	0	0	0	copy fasta	TNRC6A	chr16	24724651	24831218
TNRC6A_chr16_24724651_24831218	0/0	t0106	2607	1	0	0	1	0	0	copy fasta	TNRC6A	chr16	24724651	24831218
TNRC6A_chr16_24724651_24831218	0/0	t0107	2606	1	0	0	1	0	0	copy fasta	TNRC6A	chr16	24724651	24831218
TNRC6A_chr16_24724651_24831218	0/0	t0108	2619	1	0	1	0	0	0	copy fasta	TNRC6A	chr16	24724651	24831218
TNRC6A_chr16_24724651_24831218	0/0	t0109	2626	1	0	0	0	1	0	copy fasta	TNRC6A	chr16	24724651	24831218
TNRC6A_chr16_24724651_24831218	0/0	t0110	2629	1	0	1	0	0	0	copy fasta	TNRC6A	chr16	24724651	24831218
TNRC6B_chr22_40172925_40340808	0/0	t0001	12784	32	0	4	27	0	1	copy fasta	TNRC6B	chr22	40172925	40340808
TNRC6B_chr22_40172925_40340808	0/0	t0002	12785	26	0	4	16	2	4	copy fasta	TNRC6B	chr22	40172925	40340808
TNRC6B_chr22_40172925_40340808	0/0	t0003	12785	9	0	2	5	1	1	copy fasta	TNRC6B	chr22	40172925	40340808
TNRC6B_chr22_40172925_40340808	0/0	t0004	12785	9	0	1	6	1	1	copy fasta	TNRC6B	chr22	40172925	40340808
TNRC6B_chr22_40172925_40340808	0/0	t0005	12786	8	0	0	8	0	0	copy fasta	TNRC6B	chr22	40172925	40340808
TNRC6B_chr22_40172925_40340808	0/0	t0006	12784	7	7	0	0	0	0	copy fasta	TNRC6B	chr22	40172925	40340808
TNRC6B_chr22_40172925_40340808	0/0	t0007	12784	6	0	3	3	0	0	copy fasta	TNRC6B	chr22	40172925	40340808
TNRC6B_chr22_40172925_40340808	0/0	t0008	12786	6	0	3	2	0	1	copy fasta	TNRC6B	chr22	40172925	40340808
TNRC6B_chr22_40172925_40340808	0/0	t0009	12781	6	1	3	0	1	1	copy fasta	TNRC6B	chr22	40172925	40340808
TNRC6B_chr22_40172925_40340808	0/0	t0010	12785	5	0	1	4	0	0	copy fasta	TNRC6B	chr22	40172925	40340808
TNRC6B_chr22_40172925_40340808	0/0	t0011	12785	5	0	0	5	0	0	copy fasta	TNRC6B	chr22	40172925	40340808
TNRC6B_chr22_40172925_40340808	0/0	t0012	12786	5	2	0	1	0	2	copy fasta	TNRC6B	chr22	40172925	40340808
TNRC6B_chr22_40172925_40340808	0/0	t0013	12786	4	0	1	2	1	0	copy fasta	TNRC6B	chr22	40172925	40340808
TNRC6B_chr22_40172925_40340808	0/0	t0014	12783	3	0	3	0	0	0	copy fasta	TNRC6B	chr22	40172925	40340808
TNRC6B_chr22_40172925_40340808	0/0	t0015	12783	3	3	0	0	0	0	copy fasta	TNRC6B	chr22	40172925	40340808
TNRC6B_chr22_40172925_40340808	0/0	t0016	12786	3	3	0	0	0	0	copy fasta	TNRC6B	chr22	40172925	40340808
TNRC6B_chr22_40172925_40340808	0/0	t0017	12785	3	0	1	2	0	0	copy fasta	TNRC6B	chr22	40172925	40340808
TNRC6B_chr22_40172925_40340808	0/0	t0018	12786	3	0	0	3	0	0	copy fasta	TNRC6B	chr22	40172925	40340808
TNRC6B_chr22_40172925_40340808	0/0	t0019	12786	3	1	1	1	0	0	copy fasta	TNRC6B	chr22	40172925	40340808
TNRC6B_chr22_40172925_40340808	0/0	t0020	12785	3	0	0	2	1	0	copy fasta	TNRC6B	chr22	40172925	40340808
TNRC6B_chr22_40172925_40340808	0/0	t0021	12784	3	1	0	2	0	0	copy fasta	TNRC6B	chr22	40172925	40340808
TNRC6B_chr22_40172925_40340808	0/0	t0022	12785	3	0	0	0	0	3	copy fasta	TNRC6B	chr22	40172925	40340808