JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TP53TG3D_chr16_32248286_32260928	0/0	t0001	1094	101	6	35	54	3	3	copy fasta	TP53TG3D	chr16	32248286	32260928
TP53TG3D_chr16_32248286_32260928	0/0	t0002	1095	60	3	14	35	2	6	copy fasta	TP53TG3D	chr16	32248286	32260928
TP53TG3D_chr16_32248286_32260928	0/0	t0003	1094	18	0	6	6	6	0	copy fasta	TP53TG3D	chr16	32248286	32260928
TP53TG3D_chr16_32248286_32260928	0/0	t0004	1094	2	0	0	0	1	1	copy fasta	TP53TG3D	chr16	32248286	32260928
TP53TG3D_chr16_32248286_32260928	0/0	t0005	1094	2	1	1	0	0	0	copy fasta	TP53TG3D	chr16	32248286	32260928
TP53TG3D_chr16_32248286_32260928	0/0	t0006	1097	2	1	0	0	0	1	copy fasta	TP53TG3D	chr16	32248286	32260928
TP53TG3D_chr16_32248286_32260928	0/0	t0007	1094	1	0	0	1	0	0	copy fasta	TP53TG3D	chr16	32248286	32260928
TP53TG3D_chr16_32248286_32260928	0/0	t0008	1094	1	0	0	0	0	1	copy fasta	TP53TG3D	chr16	32248286	32260928
TP53TG3D_chr16_32248286_32260928	0/0	t0009	1095	1	1	0	0	0	0	copy fasta	TP53TG3D	chr16	32248286	32260928
TP53TG3D_chr16_32248286_32260928	0/0	t0010	1094	1	1	0	0	0	0	copy fasta	TP53TG3D	chr16	32248286	32260928
TP53TG3D_chr16_32248286_32260928	0/0	t0011	1098	1	1	0	0	0	0	copy fasta	TP53TG3D	chr16	32248286	32260928
TP53TG3E_chr16_33299306_33311945	0/0	t0001	1100	25	8	6	4	5	2	copy fasta	TP53TG3E	chr16	33299306	33311945
TP53TG3E_chr16_33299306_33311945	0/0	t0002	1095	13	1	7	2	1	2	copy fasta	TP53TG3E	chr16	33299306	33311945
TP53TG3E_chr16_33299306_33311945	0/0	t0003	1100	2	2	0	0	0	0	copy fasta	TP53TG3E	chr16	33299306	33311945
TP53TG3E_chr16_33299306_33311945	0/0	t0004	1101	1	1	0	0	0	0	copy fasta	TP53TG3E	chr16	33299306	33311945
TP53TG3E_chr16_33299306_33311945	0/0	t0005	1101	1	0	1	0	0	0	copy fasta	TP53TG3E	chr16	33299306	33311945
TP53TG3F_chr16_33454612_33467249	0/0	t0001	1093	29	9	2	10	0	8	copy fasta	TP53TG3F	chr16	33454612	33467249
TP53TG3F_chr16_33454612_33467249	0/0	t0002	1094	4	0	0	4	0	0	copy fasta	TP53TG3F	chr16	33454612	33467249
TP53TG3F_chr16_33454612_33467249	0/0	t0003	1093	1	1	0	0	0	0	copy fasta	TP53TG3F	chr16	33454612	33467249
TP53TG3F_chr16_33454612_33467249	0/0	t0004	1093	1	0	0	0	0	1	copy fasta	TP53TG3F	chr16	33454612	33467249
TP53TG3F_chr16_33454612_33467249	0/0	t0005	1093	1	0	0	0	0	1	copy fasta	TP53TG3F	chr16	33454612	33467249
TP53TG3_chr16_32668530_32681165	0/0	t0001	1091	178	28	32	77	7	34	copy fasta	TP53TG3	chr16	32668530	32681165
TP53TG3_chr16_32668530_32681165	0/0	t0002	1092	42	0	9	33	0	0	copy fasta	TP53TG3	chr16	32668530	32681165
TP53TG3_chr16_32668530_32681165	0/0	t0003	1090	8	0	0	7	0	1	copy fasta	TP53TG3	chr16	32668530	32681165
TP53TG3_chr16_32668530_32681165	0/0	t0004	1091	5	5	0	0	0	0	copy fasta	TP53TG3	chr16	32668530	32681165
TP53TG3_chr16_32668530_32681165	0/0	t0005	1091	3	0	0	3	0	0	copy fasta	TP53TG3	chr16	32668530	32681165
TP53TG3_chr16_32668530_32681165	0/0	t0006	1091	3	0	0	3	0	0	copy fasta	TP53TG3	chr16	32668530	32681165
TP53TG3_chr16_32668530_32681165	0/0	t0007	1091	3	2	1	0	0	0	copy fasta	TP53TG3	chr16	32668530	32681165
TP53TG3_chr16_32668530_32681165	0/0	t0008	1092	2	0	0	2	0	0	copy fasta	TP53TG3	chr16	32668530	32681165
TP53TG3_chr16_32668530_32681165	0/0	t0009	1091	2	2	0	0	0	0	copy fasta	TP53TG3	chr16	32668530	32681165
TP53TG3_chr16_32668530_32681165	0/0	t0010	1091	2	2	0	0	0	0	copy fasta	TP53TG3	chr16	32668530	32681165
TP53TG3_chr16_32668530_32681165	0/0	t0011	1091	2	2	0	0	0	0	copy fasta	TP53TG3	chr16	32668530	32681165
TP53TG3_chr16_32668530_32681165	0/0	t0012	1091	1	0	0	1	0	0	copy fasta	TP53TG3	chr16	32668530	32681165
TP53TG3_chr16_32668530_32681165	0/0	t0013	1090	1	1	0	0	0	0	copy fasta	TP53TG3	chr16	32668530	32681165
TP53TG3_chr16_32668530_32681165	0/0	t0014	1091	1	1	0	0	0	0	copy fasta	TP53TG3	chr16	32668530	32681165
TP53TG3_chr16_32668530_32681165	0/0	t0015	1090	1	1	0	0	0	0	copy fasta	TP53TG3	chr16	32668530	32681165
TP53TG3_chr16_32668530_32681165	0/0	t0016	1091	1	1	0	0	0	0	copy fasta	TP53TG3	chr16	32668530	32681165
TP53TG3_chr16_32668530_32681165	0/0	t0017	1091	1	0	0	0	1	0	copy fasta	TP53TG3	chr16	32668530	32681165
TP53TG3_chr16_32668530_32681165	0/0	t0018	1090	1	0	0	0	0	1	copy fasta	TP53TG3	chr16	32668530	32681165
TP53TG3_chr16_32668530_32681165	0/0	t0019	1090	1	1	0	0	0	0	copy fasta	TP53TG3	chr16	32668530	32681165
TP53TG5_chr20_45367557_45383325	1/1	t0001	1440	292	53	51	146	10	30	copy fasta	TP53TG5	chr20	45367557	45383325
TP53TG5_chr20_45367557_45383325	0/0	t0002	1440	58	0	11	33	2	12	copy fasta	TP53TG5	chr20	45367557	45383325
TP53TG5_chr20_45367557_45383325	0/0	t0003	1440	11	10	1	0	0	0	copy fasta	TP53TG5	chr20	45367557	45383325
TP53TG5_chr20_45367557_45383325	0/0	t0004	1440	10	8	2	0	0	0	copy fasta	TP53TG5	chr20	45367557	45383325
TP53TG5_chr20_45367557_45383325	0/0	t0005	1440	6	6	0	0	0	0	copy fasta	TP53TG5	chr20	45367557	45383325
TP53TG5_chr20_45367557_45383325	0/0	t0006	1440	6	5	1	0	0	0	copy fasta	TP53TG5	chr20	45367557	45383325
TP53TG5_chr20_45367557_45383325	0/0	t0007	1440	4	4	0	0	0	0	copy fasta	TP53TG5	chr20	45367557	45383325
TP53TG5_chr20_45367557_45383325	0/0	t0008	1440	2	2	0	0	0	0	copy fasta	TP53TG5	chr20	45367557	45383325
TP53TG5_chr20_45367557_45383325	0/0	t0009	1440	1	0	0	1	0	0	copy fasta	TP53TG5	chr20	45367557	45383325
TP53TG5_chr20_45367557_45383325	0/0	t0010	1440	1	0	0	1	0	0	copy fasta	TP53TG5	chr20	45367557	45383325