JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TRIM41_chr5_181218281_181240808	1/0	t0001	1753	168	4	37	88	14	24	copy fasta	TRIM41	chr5	181218281	181240808
TRIM41_chr5_181218281_181240808	0/0	t0002	1753	117	23	15	66	2	11	copy fasta	TRIM41	chr5	181218281	181240808
TRIM41_chr5_181218281_181240808	0/0	t0003	1755	23	13	0	6	0	4	copy fasta	TRIM41	chr5	181218281	181240808
TRIM41_chr5_181218281_181240808	0/0	t0004	1755	20	18	2	0	0	0	copy fasta	TRIM41	chr5	181218281	181240808
TRIM41_chr5_181218281_181240808	0/0	t0005	1755	17	10	4	0	2	1	copy fasta	TRIM41	chr5	181218281	181240808
TRIM41_chr5_181218281_181240808	0/0	t0006	1753	8	8	0	0	0	0	copy fasta	TRIM41	chr5	181218281	181240808
TRIM41_chr5_181218281_181240808	0/0	t0007	1751	8	6	2	0	0	0	copy fasta	TRIM41	chr5	181218281	181240808
TRIM41_chr5_181218281_181240808	0/0	t0008	1753	5	3	1	0	0	1	copy fasta	TRIM41	chr5	181218281	181240808
TRIM41_chr5_181218281_181240808	0/0	t0009	1753	5	0	3	1	0	1	copy fasta	TRIM41	chr5	181218281	181240808
TRIM41_chr5_181218281_181240808	0/0	t0010	1755	3	3	0	0	0	0	copy fasta	TRIM41	chr5	181218281	181240808
TRIM41_chr5_181218281_181240808	0/0	t0011	1751	3	3	0	0	0	0	copy fasta	TRIM41	chr5	181218281	181240808
TRIM41_chr5_181218281_181240808	0/0	t0012	1753	2	0	0	2	0	0	copy fasta	TRIM41	chr5	181218281	181240808
TRIM41_chr5_181218281_181240808	0/0	t0013	1753	2	0	0	2	0	0	copy fasta	TRIM41	chr5	181218281	181240808
TRIM41_chr5_181218281_181240808	0/1	t0014	1753	2	0	1	0	0	0	copy fasta	TRIM41	chr5	181218281	181240808
TRIM41_chr5_181218281_181240808	0/0	t0015	1753	1	0	0	1	0	0	copy fasta	TRIM41	chr5	181218281	181240808
TRIM41_chr5_181218281_181240808	0/0	t0016	1753	1	0	1	0	0	0	copy fasta	TRIM41	chr5	181218281	181240808
TRIM41_chr5_181218281_181240808	0/0	t0017	1755	1	1	0	0	0	0	copy fasta	TRIM41	chr5	181218281	181240808
TRIM41_chr5_181218281_181240808	0/0	t0018	1753	1	1	0	0	0	0	copy fasta	TRIM41	chr5	181218281	181240808
TRIM41_chr5_181218281_181240808	0/0	t0019	1769	1	1	0	0	0	0	copy fasta	TRIM41	chr5	181218281	181240808
TRIM41_chr5_181218281_181240808	0/0	t0020	1753	1	1	0	0	0	0	copy fasta	TRIM41	chr5	181218281	181240808
TRIM41_chr5_181218281_181240808	0/0	t0021	1753	1	0	0	0	0	1	copy fasta	TRIM41	chr5	181218281	181240808
TRIM41_chr5_181218281_181240808	0/0	t0022	1753	1	0	0	1	0	0	copy fasta	TRIM41	chr5	181218281	181240808
TRIM41_chr5_181218281_181240808	0/0	t0023	1753	1	0	1	0	0	0	copy fasta	TRIM41	chr5	181218281	181240808
TRIM41_chr5_181218281_181240808	0/0	t0024	1753	1	0	0	1	0	0	copy fasta	TRIM41	chr5	181218281	181240808
TRIM41_chr5_181218281_181240808	0/0	t0025	1753	1	0	0	0	0	1	copy fasta	TRIM41	chr5	181218281	181240808
TRIM41_chr5_181218281_181240808	0/0	t0026	1753	1	0	0	1	0	0	copy fasta	TRIM41	chr5	181218281	181240808
TRIM41_chr5_181218281_181240808	0/0	t0027	1753	1	0	0	1	0	0	copy fasta	TRIM41	chr5	181218281	181240808
TRIM41_chr5_181218281_181240808	0/0	t0028	1753	1	0	1	0	0	0	copy fasta	TRIM41	chr5	181218281	181240808
TRIM41_chr5_181218281_181240808	0/0	t0029	1755	1	1	0	0	0	0	copy fasta	TRIM41	chr5	181218281	181240808
TRIM42_chr3_140673064_140706150	1/1	t0001	343	410	98	72	190	10	38	copy fasta	TRIM42	chr3	140673064	140706150
TRIM43B_chr2_95472008_95489754	0/0	t0001	310	360	91	59	164	9	37	copy fasta	TRIM43B	chr2	95472008	95489754
TRIM43B_chr2_95472008_95489754	0/1	t0002	309	58	2	4	43	1	7	copy fasta	TRIM43B	chr2	95472008	95489754
TRIM43B_chr2_95472008_95489754	0/0	t0003	310	3	0	3	0	0	0	copy fasta	TRIM43B	chr2	95472008	95489754
TRIM43B_chr2_95472008_95489754	1/0	t0004	310	1	0	0	0	0	0	copy fasta	TRIM43B	chr2	95472008	95489754
TRIM43B_chr2_95472008_95489754	0/0	t0005	309	1	0	0	1	0	0	copy fasta	TRIM43B	chr2	95472008	95489754
TRIM43B_chr2_95472008_95489754	0/0	t0006	310	1	1	0	0	0	0	copy fasta	TRIM43B	chr2	95472008	95489754
TRIM43_chr2_95587001_95604778	1/1	t0001	359	383	87	74	174	10	36	copy fasta	TRIM43	chr2	95587001	95604778
TRIM43_chr2_95587001_95604778	0/0	t0002	360	8	2	0	4	0	2	copy fasta	TRIM43	chr2	95587001	95604778
TRIM43_chr2_95587001_95604778	0/0	t0003	359	1	0	0	0	0	1	copy fasta	TRIM43	chr2	95587001	95604778
TRIM43_chr2_95587001_95604778	0/0	t0004	360	1	0	0	0	0	1	copy fasta	TRIM43	chr2	95587001	95604778
TRIM43_chr2_95587001_95604778	0/0	t0005	359	1	1	0	0	0	0	copy fasta	TRIM43	chr2	95587001	95604778
TRIM44_chr11_35657775_35823007	0/0	t0001	11966	52	14	5	31	0	2	copy fasta	TRIM44	chr11	35657775	35823007
TRIM44_chr11_35657775_35823007	0/1	t0002	11963	43	2	15	19	4	2	copy fasta	TRIM44	chr11	35657775	35823007
TRIM44_chr11_35657775_35823007	0/0	t0003	11967	24	5	2	11	4	2	copy fasta	TRIM44	chr11	35657775	35823007
TRIM44_chr11_35657775_35823007	0/0	t0004	11965	23	0	11	12	0	0	copy fasta	TRIM44	chr11	35657775	35823007
TRIM44_chr11_35657775_35823007	0/0	t0005	11968	23	0	4	19	0	0	copy fasta	TRIM44	chr11	35657775	35823007
TRIM44_chr11_35657775_35823007	0/0	t0006	11965	13	2	5	5	0	1	copy fasta	TRIM44	chr11	35657775	35823007
TRIM44_chr11_35657775_35823007	0/0	t0007	11967	13	0	2	7	1	3	copy fasta	TRIM44	chr11	35657775	35823007
TRIM44_chr11_35657775_35823007	0/0	t0008	11964	10	0	4	3	0	3	copy fasta	TRIM44	chr11	35657775	35823007
TRIM44_chr11_35657775_35823007	0/0	t0009	11967	9	9	0	0	0	0	copy fasta	TRIM44	chr11	35657775	35823007