JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TRIM44_chr11_35657775_35823007	0/0	t0060	11960	1	0	1	0	0	0	copy fasta	TRIM44	chr11	35657775	35823007
TRIM44_chr11_35657775_35823007	0/0	t0061	11965	1	1	0	0	0	0	copy fasta	TRIM44	chr11	35657775	35823007
TRIM44_chr11_35657775_35823007	0/0	t0062	11968	1	1	0	0	0	0	copy fasta	TRIM44	chr11	35657775	35823007
TRIM44_chr11_35657775_35823007	0/0	t0063	11969	1	0	0	1	0	0	copy fasta	TRIM44	chr11	35657775	35823007
TRIM44_chr11_35657775_35823007	0/0	t0064	11968	1	1	0	0	0	0	copy fasta	TRIM44	chr11	35657775	35823007
TRIM44_chr11_35657775_35823007	0/0	t0065	11967	1	0	0	1	0	0	copy fasta	TRIM44	chr11	35657775	35823007
TRIM44_chr11_35657775_35823007	0/0	t0066	11969	1	0	0	1	0	0	copy fasta	TRIM44	chr11	35657775	35823007
TRIM44_chr11_35657775_35823007	0/0	t0067	11968	1	1	0	0	0	0	copy fasta	TRIM44	chr11	35657775	35823007
TRIM44_chr11_35657775_35823007	0/0	t0068	11969	1	0	0	0	0	1	copy fasta	TRIM44	chr11	35657775	35823007
TRIM44_chr11_35657775_35823007	0/0	t0069	11967	1	0	0	1	0	0	copy fasta	TRIM44	chr11	35657775	35823007
TRIM44_chr11_35657775_35823007	0/0	t0070	11966	1	0	0	1	0	0	copy fasta	TRIM44	chr11	35657775	35823007
TRIM44_chr11_35657775_35823007	0/0	t0071	11966	1	1	0	0	0	0	copy fasta	TRIM44	chr11	35657775	35823007
TRIM44_chr11_35657775_35823007	0/0	t0072	11967	1	1	0	0	0	0	copy fasta	TRIM44	chr11	35657775	35823007
TRIM44_chr11_35657775_35823007	0/0	t0073	11967	1	1	0	0	0	0	copy fasta	TRIM44	chr11	35657775	35823007
TRIM44_chr11_35657775_35823007	0/0	t0074	11966	1	0	0	1	0	0	copy fasta	TRIM44	chr11	35657775	35823007
TRIM44_chr11_35657775_35823007	0/0	t0075	11966	1	0	1	0	0	0	copy fasta	TRIM44	chr11	35657775	35823007
TRIM44_chr11_35657775_35823007	0/0	t0076	11966	1	0	0	1	0	0	copy fasta	TRIM44	chr11	35657775	35823007
TRIM44_chr11_35657775_35823007	0/0	t0077	11966	1	0	0	1	0	0	copy fasta	TRIM44	chr11	35657775	35823007
TRIM44_chr11_35657775_35823007	0/0	t0078	11966	1	1	0	0	0	0	copy fasta	TRIM44	chr11	35657775	35823007
TRIM44_chr11_35657775_35823007	0/0	t0079	11966	1	1	0	0	0	0	copy fasta	TRIM44	chr11	35657775	35823007
TRIM44_chr11_35657775_35823007	0/0	t0080	11966	1	1	0	0	0	0	copy fasta	TRIM44	chr11	35657775	35823007
TRIM44_chr11_35657775_35823007	0/0	t0081	11965	1	1	0	0	0	0	copy fasta	TRIM44	chr11	35657775	35823007
TRIM44_chr11_35657775_35823007	0/0	t0082	11965	1	0	1	0	0	0	copy fasta	TRIM44	chr11	35657775	35823007
TRIM44_chr11_35657775_35823007	0/0	t0083	11967	1	0	1	0	0	0	copy fasta	TRIM44	chr11	35657775	35823007
TRIM44_chr11_35657775_35823007	0/0	t0084	11961	1	1	0	0	0	0	copy fasta	TRIM44	chr11	35657775	35823007
TRIM44_chr11_35657775_35823007	0/0	t0085	11960	1	1	0	0	0	0	copy fasta	TRIM44	chr11	35657775	35823007
TRIM44_chr11_35657775_35823007	0/0	t0086	11960	1	1	0	0	0	0	copy fasta	TRIM44	chr11	35657775	35823007
TRIM44_chr11_35657775_35823007	0/0	t0087	11960	1	1	0	0	0	0	copy fasta	TRIM44	chr11	35657775	35823007
TRIM44_chr11_35657775_35823007	0/0	t0088	11966	1	0	0	1	0	0	copy fasta	TRIM44	chr11	35657775	35823007
TRIM44_chr11_35657775_35823007	0/0	t0089	11964	1	0	0	0	0	1	copy fasta	TRIM44	chr11	35657775	35823007
TRIM44_chr11_35657775_35823007	0/0	t0090	11967	1	0	0	0	0	1	copy fasta	TRIM44	chr11	35657775	35823007
TRIM44_chr11_35657775_35823007	0/0	t0091	11963	1	0	0	1	0	0	copy fasta	TRIM44	chr11	35657775	35823007
TRIM44_chr11_35657775_35823007	0/0	t0092	11963	1	0	0	0	0	1	copy fasta	TRIM44	chr11	35657775	35823007
TRIM44_chr11_35657775_35823007	0/0	t0093	11963	1	0	0	1	0	0	copy fasta	TRIM44	chr11	35657775	35823007
TRIM44_chr11_35657775_35823007	0/0	t0094	11963	1	0	0	1	0	0	copy fasta	TRIM44	chr11	35657775	35823007
TRIM44_chr11_35657775_35823007	0/0	t0095	11963	1	0	1	0	0	0	copy fasta	TRIM44	chr11	35657775	35823007
TRIM44_chr11_35657775_35823007	0/0	t0096	11963	1	0	0	0	0	1	copy fasta	TRIM44	chr11	35657775	35823007
TRIM44_chr11_35657775_35823007	0/0	t0097	11968	1	0	1	0	0	0	copy fasta	TRIM44	chr11	35657775	35823007
TRIM44_chr11_35657775_35823007	0/0	t0098	11962	1	0	0	1	0	0	copy fasta	TRIM44	chr11	35657775	35823007
TRIM44_chr11_35657775_35823007	0/0	t0099	11962	1	0	0	1	0	0	copy fasta	TRIM44	chr11	35657775	35823007
TRIM44_chr11_35657775_35823007	0/0	t0100	11960	1	0	1	0	0	0	copy fasta	TRIM44	chr11	35657775	35823007
TRIM44_chr11_35657775_35823007	0/0	t0101	11963	1	0	0	1	0	0	copy fasta	TRIM44	chr11	35657775	35823007
TRIM44_chr11_35657775_35823007	0/0	t0102	11966	1	0	0	1	0	0	copy fasta	TRIM44	chr11	35657775	35823007
TRIM44_chr11_35657775_35823007	0/0	t0103	11968	1	0	0	1	0	0	copy fasta	TRIM44	chr11	35657775	35823007
TRIM44_chr11_35657775_35823007	0/0	t0104	11967	1	0	0	1	0	0	copy fasta	TRIM44	chr11	35657775	35823007
TRIM44_chr11_35657775_35823007	0/0	t0105	11967	1	0	0	0	0	1	copy fasta	TRIM44	chr11	35657775	35823007
TRIM44_chr11_35657775_35823007	0/0	t0106	11966	1	0	1	0	0	0	copy fasta	TRIM44	chr11	35657775	35823007
TRIM44_chr11_35657775_35823007	0/0	t0107	11966	1	0	0	0	1	0	copy fasta	TRIM44	chr11	35657775	35823007
TRIM44_chr11_35657775_35823007	0/0	t0108	11961	1	1	0	0	0	0	copy fasta	TRIM44	chr11	35657775	35823007
TRIM44_chr11_35657775_35823007	0/0	t0109	11967	1	0	0	1	0	0	copy fasta	TRIM44	chr11	35657775	35823007