JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TRIM44_chr11_35657775_35823007	0/0	t0110	11966	1	0	0	1	0	0	copy fasta	TRIM44	chr11	35657775	35823007
TRIM44_chr11_35657775_35823007	0/0	t0111	11960	1	0	0	1	0	0	copy fasta	TRIM44	chr11	35657775	35823007
TRIM45_chr1_117106060_117126749	0/1	t0001	1794	180	32	37	85	7	18	copy fasta	TRIM45	chr1	117106060	117126749
TRIM45_chr1_117106060_117126749	0/0	t0002	1790	63	22	24	3	5	9	copy fasta	TRIM45	chr1	117106060	117126749
TRIM45_chr1_117106060_117126749	0/0	t0003	1793	26	1	0	20	0	5	copy fasta	TRIM45	chr1	117106060	117126749
TRIM45_chr1_117106060_117126749	0/0	t0004	1794	26	3	10	8	2	3	copy fasta	TRIM45	chr1	117106060	117126749
TRIM45_chr1_117106060_117126749	0/0	t0005	1795	14	14	0	0	0	0	copy fasta	TRIM45	chr1	117106060	117126749
TRIM45_chr1_117106060_117126749	1/0	t0006	1794	7	3	1	0	2	0	copy fasta	TRIM45	chr1	117106060	117126749
TRIM45_chr1_117106060_117126749	0/0	t0007	1793	5	5	0	0	0	0	copy fasta	TRIM45	chr1	117106060	117126749
TRIM45_chr1_117106060_117126749	0/0	t0008	1794	4	4	0	0	0	0	copy fasta	TRIM45	chr1	117106060	117126749
TRIM45_chr1_117106060_117126749	0/0	t0009	1793	3	0	0	3	0	0	copy fasta	TRIM45	chr1	117106060	117126749
TRIM45_chr1_117106060_117126749	0/0	t0010	1794	2	2	0	0	0	0	copy fasta	TRIM45	chr1	117106060	117126749
TRIM45_chr1_117106060_117126749	0/0	t0011	1789	2	1	0	1	0	0	copy fasta	TRIM45	chr1	117106060	117126749
TRIM45_chr1_117106060_117126749	0/0	t0012	1795	2	2	0	0	0	0	copy fasta	TRIM45	chr1	117106060	117126749
TRIM45_chr1_117106060_117126749	0/0	t0013	1795	2	2	0	0	0	0	copy fasta	TRIM45	chr1	117106060	117126749
TRIM45_chr1_117106060_117126749	0/0	t0014	1794	1	0	0	1	0	0	copy fasta	TRIM45	chr1	117106060	117126749
TRIM45_chr1_117106060_117126749	0/0	t0015	1792	1	0	0	1	0	0	copy fasta	TRIM45	chr1	117106060	117126749
TRIM45_chr1_117106060_117126749	0/0	t0016	1793	1	1	0	0	0	0	copy fasta	TRIM45	chr1	117106060	117126749
TRIM45_chr1_117106060_117126749	0/0	t0017	1794	1	0	0	1	0	0	copy fasta	TRIM45	chr1	117106060	117126749
TRIM45_chr1_117106060_117126749	0/0	t0018	1794	1	0	0	1	0	0	copy fasta	TRIM45	chr1	117106060	117126749
TRIM45_chr1_117106060_117126749	0/0	t0019	1794	1	0	0	0	0	1	copy fasta	TRIM45	chr1	117106060	117126749
TRIM45_chr1_117106060_117126749	0/0	t0020	1794	1	0	0	1	0	0	copy fasta	TRIM45	chr1	117106060	117126749
TRIM45_chr1_117106060_117126749	0/0	t0021	1795	1	0	1	0	0	0	copy fasta	TRIM45	chr1	117106060	117126749
TRIM45_chr1_117106060_117126749	0/0	t0022	1791	1	1	0	0	0	0	copy fasta	TRIM45	chr1	117106060	117126749
TRIM45_chr1_117106060_117126749	0/0	t0023	1793	1	1	0	0	0	0	copy fasta	TRIM45	chr1	117106060	117126749
TRIM45_chr1_117106060_117126749	0/0	t0024	1794	1	0	0	1	0	0	copy fasta	TRIM45	chr1	117106060	117126749
TRIM45_chr1_117106060_117126749	0/0	t0025	1790	1	1	0	0	0	0	copy fasta	TRIM45	chr1	117106060	117126749
TRIM45_chr1_117106060_117126749	0/0	t0026	1790	1	0	1	0	0	0	copy fasta	TRIM45	chr1	117106060	117126749
TRIM45_chr1_117106060_117126749	0/0	t0027	1794	1	0	0	1	0	0	copy fasta	TRIM45	chr1	117106060	117126749
TRIM45_chr1_117106060_117126749	0/0	t0028	1794	1	1	0	0	0	0	copy fasta	TRIM45	chr1	117106060	117126749
TRIM45_chr1_117106060_117126749	0/0	t0029	1794	1	1	0	0	0	0	copy fasta	TRIM45	chr1	117106060	117126749
TRIM45_chr1_117106060_117126749	0/0	t0030	1791	1	1	0	0	0	0	copy fasta	TRIM45	chr1	117106060	117126749
TRIM45_chr1_117106060_117126749	0/0	t0031	1794	1	0	0	1	0	0	copy fasta	TRIM45	chr1	117106060	117126749
TRIM46_chr1_155168849_155189970	1/1	t0001	899	342	98	61	124	15	42	copy fasta	TRIM46	chr1	155168849	155189970
TRIM46_chr1_155168849_155189970	0/0	t0002	899	3	0	0	3	0	0	copy fasta	TRIM46	chr1	155168849	155189970
TRIM46_chr1_155168849_155189970	0/0	t0003	839	1	0	1	0	0	0	copy fasta	TRIM46	chr1	155168849	155189970
TRIM46_chr1_155168849_155189970	0/0	t0004	899	1	0	0	0	1	0	copy fasta	TRIM46	chr1	155168849	155189970
TRIM46_chr1_155168849_155189970	0/0	t0005	899	1	0	0	1	0	0	copy fasta	TRIM46	chr1	155168849	155189970
TRIM47_chr17_75869164_75883581	1/1	t0001	353	248	44	59	110	10	23	copy fasta	TRIM47	chr17	75869164	75883581
TRIM47_chr17_75869164_75883581	0/0	t0002	353	88	23	12	41	4	8	copy fasta	TRIM47	chr17	75869164	75883581
TRIM47_chr17_75869164_75883581	0/0	t0003	353	22	20	2	0	0	0	copy fasta	TRIM47	chr17	75869164	75883581
TRIM47_chr17_75869164_75883581	0/0	t0004	353	12	10	1	0	0	1	copy fasta	TRIM47	chr17	75869164	75883581
TRIM47_chr17_75869164_75883581	0/0	t0005	353	1	1	0	0	0	0	copy fasta	TRIM47	chr17	75869164	75883581
TRIM47_chr17_75869164_75883581	0/0	t0006	353	1	0	0	1	0	0	copy fasta	TRIM47	chr17	75869164	75883581
TRIM47_chr17_75869164_75883581	0/0	t0007	353	1	0	0	1	0	0	copy fasta	TRIM47	chr17	75869164	75883581
TRIM47_chr17_75869164_75883581	0/0	t0008	353	1	0	0	1	0	0	copy fasta	TRIM47	chr17	75869164	75883581
TRIM48_chr11_55257155_55276114	0/0	t0001	792	152	24	38	66	5	19	copy fasta	TRIM48	chr11	55257155	55276114
TRIM48_chr11_55257155_55276114	1/1	t0002	792	78	39	11	20	1	5	copy fasta	TRIM48	chr11	55257155	55276114
TRIM48_chr11_55257155_55276114	0/0	t0003	792	18	1	4	7	2	4	copy fasta	TRIM48	chr11	55257155	55276114
TRIM48_chr11_55257155_55276114	0/0	t0004	792	9	7	2	0	0	0	copy fasta	TRIM48	chr11	55257155	55276114