JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TRIM48_chr11_55257155_55276114	0/0	t0005	164	7	0	0	7	0	0	copy fasta	TRIM48	chr11	55257155	55276114
TRIM48_chr11_55257155_55276114	0/0	t0006	164	2	0	0	2	0	0	copy fasta	TRIM48	chr11	55257155	55276114
TRIM48_chr11_55257155_55276114	0/0	t0007	792	2	0	0	2	0	0	copy fasta	TRIM48	chr11	55257155	55276114
TRIM48_chr11_55257155_55276114	0/0	t0008	792	1	0	1	0	0	0	copy fasta	TRIM48	chr11	55257155	55276114
TRIM48_chr11_55257155_55276114	0/0	t0009	792	1	1	0	0	0	0	copy fasta	TRIM48	chr11	55257155	55276114
TRIM48_chr11_55257155_55276114	0/0	t0010	792	1	1	0	0	0	0	copy fasta	TRIM48	chr11	55257155	55276114
TRIM48_chr11_55257155_55276114	0/0	t0011	792	1	1	0	0	0	0	copy fasta	TRIM48	chr11	55257155	55276114
TRIM49B_chr11_49023823_49043155	0/1	t0001	336	385	81	73	172	14	44	copy fasta	TRIM49B	chr11	49023823	49043155
TRIM49B_chr11_49023823_49043155	1/0	t0002	336	24	0	0	23	0	0	copy fasta	TRIM49B	chr11	49023823	49043155
TRIM49B_chr11_49023823_49043155	0/0	t0003	333	7	7	0	0	0	0	copy fasta	TRIM49B	chr11	49023823	49043155
TRIM49B_chr11_49023823_49043155	0/0	t0004	334	5	5	0	0	0	0	copy fasta	TRIM49B	chr11	49023823	49043155
TRIM49B_chr11_49023823_49043155	0/0	t0005	336	5	0	5	0	0	0	copy fasta	TRIM49B	chr11	49023823	49043155
TRIM49B_chr11_49023823_49043155	0/0	t0006	336	2	2	0	0	0	0	copy fasta	TRIM49B	chr11	49023823	49043155
TRIM49B_chr11_49023823_49043155	0/0	t0007	336	1	0	0	1	0	0	copy fasta	TRIM49B	chr11	49023823	49043155
TRIM49B_chr11_49023823_49043155	0/0	t0008	336	1	1	0	0	0	0	copy fasta	TRIM49B	chr11	49023823	49043155
TRIM49C_chr11_90026106_90047025	1/1	t0001	805	106	6	20	59	8	11	copy fasta	TRIM49C	chr11	90026106	90047025
TRIM49C_chr11_90026106_90047025	0/0	t0002	805	9	2	1	3	0	3	copy fasta	TRIM49C	chr11	90026106	90047025
TRIM49C_chr11_90026106_90047025	0/0	t0003	805	1	0	1	0	0	0	copy fasta	TRIM49C	chr11	90026106	90047025
TRIM49C_chr11_90026106_90047025	0/0	t0004	805	1	0	1	0	0	0	copy fasta	TRIM49C	chr11	90026106	90047025
TRIM49C_chr11_90026106_90047025	0/0	t0005	805	1	0	0	1	0	0	copy fasta	TRIM49C	chr11	90026106	90047025
TRIM49C_chr11_90026106_90047025	0/0	t0006	805	1	0	0	1	0	0	copy fasta	TRIM49C	chr11	90026106	90047025
TRIM49C_chr11_90026106_90047025	0/0	t0007	805	1	0	1	0	0	0	copy fasta	TRIM49C	chr11	90026106	90047025
TRIM49D1_chr11_89906409_89927245	1/1	t0001	788	138	38	31	53	4	10	copy fasta	TRIM49D1	chr11	89906409	89927245
TRIM49D1_chr11_89906409_89927245	0/0	t0002	788	47	5	10	26	1	5	copy fasta	TRIM49D1	chr11	89906409	89927245
TRIM49D1_chr11_89906409_89927245	0/0	t0003	788	6	0	2	0	1	3	copy fasta	TRIM49D1	chr11	89906409	89927245
TRIM49D1_chr11_89906409_89927245	0/0	t0004	788	5	5	0	0	0	0	copy fasta	TRIM49D1	chr11	89906409	89927245
TRIM49D1_chr11_89906409_89927245	0/0	t0005	788	4	2	0	1	0	1	copy fasta	TRIM49D1	chr11	89906409	89927245
TRIM49D1_chr11_89906409_89927245	0/0	t0006	788	3	3	0	0	0	0	copy fasta	TRIM49D1	chr11	89906409	89927245
TRIM49D1_chr11_89906409_89927245	0/0	t0007	788	2	0	0	2	0	0	copy fasta	TRIM49D1	chr11	89906409	89927245
TRIM49D1_chr11_89906409_89927245	0/0	t0008	788	1	0	0	0	0	1	copy fasta	TRIM49D1	chr11	89906409	89927245
TRIM49D1_chr11_89906409_89927245	0/0	t0009	788	1	0	1	0	0	0	copy fasta	TRIM49D1	chr11	89906409	89927245
TRIM49D1_chr11_89906409_89927245	0/0	t0010	788	1	1	0	0	0	0	copy fasta	TRIM49D1	chr11	89906409	89927245
TRIM49D2_chr11_89919064_89938063	0/0	t0001	293	245	57	49	106	10	23	copy fasta	TRIM49D2	chr11	89919064	89938063
TRIM49D2_chr11_89919064_89938063	0/0	t0002	293	7	6	1	0	0	0	copy fasta	TRIM49D2	chr11	89919064	89938063
TRIM49D2_chr11_89919064_89938063	0/0	t0003	293	3	2	0	0	0	1	copy fasta	TRIM49D2	chr11	89919064	89938063
TRIM49D2_chr11_89919064_89938063	0/0	t0004	293	1	1	0	0	0	0	copy fasta	TRIM49D2	chr11	89919064	89938063
TRIM49_chr11_89792655_89813575	1/0	t0001	805	134	7	30	64	11	21	copy fasta	TRIM49	chr11	89792655	89813575
TRIM49_chr11_89792655_89813575	0/0	t0002	805	51	14	5	26	0	6	copy fasta	TRIM49	chr11	89792655	89813575
TRIM49_chr11_89792655_89813575	0/0	t0003	805	22	0	7	13	0	2	copy fasta	TRIM49	chr11	89792655	89813575
TRIM49_chr11_89792655_89813575	0/0	t0004	805	19	5	2	7	0	5	copy fasta	TRIM49	chr11	89792655	89813575
TRIM49_chr11_89792655_89813575	0/0	t0005	805	6	4	1	0	1	0	copy fasta	TRIM49	chr11	89792655	89813575
TRIM49_chr11_89792655_89813575	0/0	t0006	806	6	0	0	6	0	0	copy fasta	TRIM49	chr11	89792655	89813575
TRIM49_chr11_89792655_89813575	0/0	t0007	805	4	0	0	0	2	2	copy fasta	TRIM49	chr11	89792655	89813575
TRIM49_chr11_89792655_89813575	0/0	t0008	805	3	1	0	1	0	1	copy fasta	TRIM49	chr11	89792655	89813575
TRIM49_chr11_89792655_89813575	0/0	t0009	805	3	0	1	1	0	1	copy fasta	TRIM49	chr11	89792655	89813575
TRIM49_chr11_89792655_89813575	0/0	t0010	805	2	2	0	0	0	0	copy fasta	TRIM49	chr11	89792655	89813575
TRIM49_chr11_89792655_89813575	0/0	t0011	805	1	1	0	0	0	0	copy fasta	TRIM49	chr11	89792655	89813575
TRIM49_chr11_89792655_89813575	0/0	t0012	805	1	0	0	1	0	0	copy fasta	TRIM49	chr11	89792655	89813575
TRIM49_chr11_89792655_89813575	0/0	t0013	805	1	0	0	1	0	0	copy fasta	TRIM49	chr11	89792655	89813575
TRIM4_chr7_99885403_99924530	0/0	t0001	1890	182	60	30	61	8	23	copy fasta	TRIM4	chr7	99885403	99924530