JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TSPAN33_chr7_129139707_129174699	0/0	t0023	2100	1	1	0	0	0	0	copy fasta	TSPAN33	chr7	129139707	129174699
TSPAN33_chr7_129139707_129174699	0/0	t0024	2122	1	1	0	0	0	0	copy fasta	TSPAN33	chr7	129139707	129174699
TSPAN33_chr7_129139707_129174699	0/0	t0025	2122	1	1	0	0	0	0	copy fasta	TSPAN33	chr7	129139707	129174699
TSPAN33_chr7_129139707_129174699	0/0	t0026	2100	1	0	0	1	0	0	copy fasta	TSPAN33	chr7	129139707	129174699
TSPAN33_chr7_129139707_129174699	0/0	t0027	2100	1	0	0	1	0	0	copy fasta	TSPAN33	chr7	129139707	129174699
TSPAN33_chr7_129139707_129174699	0/0	t0028	2100	1	1	0	0	0	0	copy fasta	TSPAN33	chr7	129139707	129174699
TSPAN33_chr7_129139707_129174699	0/0	t0029	2102	1	0	1	0	0	0	copy fasta	TSPAN33	chr7	129139707	129174699
TSPAN33_chr7_129139707_129174699	0/0	t0030	2100	1	0	0	1	0	0	copy fasta	TSPAN33	chr7	129139707	129174699
TSPAN33_chr7_129139707_129174699	0/0	t0031	2100	1	0	0	1	0	0	copy fasta	TSPAN33	chr7	129139707	129174699
TSPAN33_chr7_129139707_129174699	0/0	t0032	2100	1	0	0	1	0	0	copy fasta	TSPAN33	chr7	129139707	129174699
TSPAN3_chr15_77036404_77076109	1/0	t0001	5587	2	0	0	1	0	0	copy fasta	TSPAN3	chr15	77036404	77076109
TSPAN3_chr15_77036404_77076109	0/0	t0002	5587	1	0	0	1	0	0	copy fasta	TSPAN3	chr15	77036404	77076109
TSPAN4_chr11_837852_872111	0/1	t0001	663	253	54	32	128	7	31	copy fasta	TSPAN4	chr11	837852	872111
TSPAN4_chr11_837852_872111	1/0	t0002	663	114	30	29	41	4	9	copy fasta	TSPAN4	chr11	837852	872111
TSPAN4_chr11_837852_872111	0/0	t0003	663	18	0	10	5	3	0	copy fasta	TSPAN4	chr11	837852	872111
TSPAN4_chr11_837852_872111	0/0	t0004	663	2	1	1	0	0	0	copy fasta	TSPAN4	chr11	837852	872111
TSPAN4_chr11_837852_872111	0/0	t0005	663	2	0	0	0	2	0	copy fasta	TSPAN4	chr11	837852	872111
TSPAN4_chr11_837852_872111	0/0	t0006	663	1	1	0	0	0	0	copy fasta	TSPAN4	chr11	837852	872111
TSPAN4_chr11_837852_872111	0/0	t0007	663	1	0	0	0	0	1	copy fasta	TSPAN4	chr11	837852	872111
TSPAN4_chr11_837852_872111	0/0	t0008	663	1	1	0	0	0	0	copy fasta	TSPAN4	chr11	837852	872111
TSPAN4_chr11_837852_872111	0/0	t0009	663	1	0	0	0	0	1	copy fasta	TSPAN4	chr11	837852	872111
TSPAN4_chr11_837852_872111	0/0	t0010	663	1	1	0	0	0	0	copy fasta	TSPAN4	chr11	837852	872111
TSPAN5_chr4_98465367_98663611	1/1	t0001	2541	166	34	43	65	8	14	copy fasta	TSPAN5	chr4	98465367	98663611
TSPAN5_chr4_98465367_98663611	0/0	t0002	2541	9	3	2	1	0	3	copy fasta	TSPAN5	chr4	98465367	98663611
TSPAN5_chr4_98465367_98663611	0/0	t0003	2541	9	8	1	0	0	0	copy fasta	TSPAN5	chr4	98465367	98663611
TSPAN5_chr4_98465367_98663611	0/0	t0004	2541	7	7	0	0	0	0	copy fasta	TSPAN5	chr4	98465367	98663611
TSPAN5_chr4_98465367_98663611	0/0	t0005	2541	7	0	0	0	0	7	copy fasta	TSPAN5	chr4	98465367	98663611
TSPAN5_chr4_98465367_98663611	0/0	t0006	2541	5	4	1	0	0	0	copy fasta	TSPAN5	chr4	98465367	98663611
TSPAN5_chr4_98465367_98663611	0/0	t0007	2541	4	4	0	0	0	0	copy fasta	TSPAN5	chr4	98465367	98663611
TSPAN5_chr4_98465367_98663611	0/0	t0008	2541	3	2	1	0	0	0	copy fasta	TSPAN5	chr4	98465367	98663611
TSPAN5_chr4_98465367_98663611	0/0	t0009	2541	3	3	0	0	0	0	copy fasta	TSPAN5	chr4	98465367	98663611
TSPAN5_chr4_98465367_98663611	0/0	t0010	2541	3	3	0	0	0	0	copy fasta	TSPAN5	chr4	98465367	98663611
TSPAN5_chr4_98465367_98663611	0/0	t0011	2541	2	2	0	0	0	0	copy fasta	TSPAN5	chr4	98465367	98663611
TSPAN5_chr4_98465367_98663611	0/0	t0012	2541	2	0	0	2	0	0	copy fasta	TSPAN5	chr4	98465367	98663611
TSPAN5_chr4_98465367_98663611	0/0	t0013	2541	1	1	0	0	0	0	copy fasta	TSPAN5	chr4	98465367	98663611
TSPAN5_chr4_98465367_98663611	0/0	t0014	2541	1	1	0	0	0	0	copy fasta	TSPAN5	chr4	98465367	98663611
TSPAN5_chr4_98465367_98663611	0/0	t0015	2541	1	1	0	0	0	0	copy fasta	TSPAN5	chr4	98465367	98663611
TSPAN5_chr4_98465367_98663611	0/0	t0016	2541	1	1	0	0	0	0	copy fasta	TSPAN5	chr4	98465367	98663611
TSPAN5_chr4_98465367_98663611	0/0	t0017	2541	1	1	0	0	0	0	copy fasta	TSPAN5	chr4	98465367	98663611
TSPAN5_chr4_98465367_98663611	0/0	t0018	2541	1	1	0	0	0	0	copy fasta	TSPAN5	chr4	98465367	98663611
TSPAN5_chr4_98465367_98663611	0/0	t0019	2541	1	1	0	0	0	0	copy fasta	TSPAN5	chr4	98465367	98663611
TSPAN5_chr4_98465367_98663611	0/0	t0020	2541	1	1	0	0	0	0	copy fasta	TSPAN5	chr4	98465367	98663611
TSPAN5_chr4_98465367_98663611	0/0	t0021	2541	1	1	0	0	0	0	copy fasta	TSPAN5	chr4	98465367	98663611
TSPAN5_chr4_98465367_98663611	0/0	t0022	2541	1	1	0	0	0	0	copy fasta	TSPAN5	chr4	98465367	98663611
TSPAN5_chr4_98465367_98663611	0/0	t0023	2541	1	1	0	0	0	0	copy fasta	TSPAN5	chr4	98465367	98663611
TSPAN5_chr4_98465367_98663611	0/0	t0024	2541	1	1	0	0	0	0	copy fasta	TSPAN5	chr4	98465367	98663611
TSPAN5_chr4_98465367_98663611	0/0	t0025	2541	1	1	0	0	0	0	copy fasta	TSPAN5	chr4	98465367	98663611
TSPAN5_chr4_98465367_98663611	0/0	t0026	2541	1	1	0	0	0	0	copy fasta	TSPAN5	chr4	98465367	98663611
TSPAN5_chr4_98465367_98663611	0/0	t0027	2541	1	1	0	0	0	0	copy fasta	TSPAN5	chr4	98465367	98663611
TSPAN5_chr4_98465367_98663611	0/0	t0028	2541	1	1	0	0	0	0	copy fasta	TSPAN5	chr4	98465367	98663611