JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TTC19_chr17_15994824_16034404	0/0	t0059	1912	1	1	0	0	0	0	copy fasta	TTC19	chr17	15994824	16034404
TTC19_chr17_15994824_16034404	0/0	t0060	1895	1	1	0	0	0	0	copy fasta	TTC19	chr17	15994824	16034404
TTC19_chr17_15994824_16034404	0/0	t0061	1922	1	0	1	0	0	0	copy fasta	TTC19	chr17	15994824	16034404
TTC19_chr17_15994824_16034404	0/0	t0062	1919	1	1	0	0	0	0	copy fasta	TTC19	chr17	15994824	16034404
TTC19_chr17_15994824_16034404	0/0	t0063	1913	1	1	0	0	0	0	copy fasta	TTC19	chr17	15994824	16034404
TTC19_chr17_15994824_16034404	0/0	t0064	1910	1	1	0	0	0	0	copy fasta	TTC19	chr17	15994824	16034404
TTC19_chr17_15994824_16034404	0/0	t0065	1909	1	0	1	0	0	0	copy fasta	TTC19	chr17	15994824	16034404
TTC19_chr17_15994824_16034404	0/0	t0066	1899	1	0	0	0	0	1	copy fasta	TTC19	chr17	15994824	16034404
TTC19_chr17_15994824_16034404	0/0	t0067	1907	1	1	0	0	0	0	copy fasta	TTC19	chr17	15994824	16034404
TTC19_chr17_15994824_16034404	0/0	t0068	1908	1	0	0	1	0	0	copy fasta	TTC19	chr17	15994824	16034404
TTC19_chr17_15994824_16034404	0/0	t0069	1919	1	1	0	0	0	0	copy fasta	TTC19	chr17	15994824	16034404
TTC19_chr17_15994824_16034404	0/0	t0070	1908	1	0	0	1	0	0	copy fasta	TTC19	chr17	15994824	16034404
TTC1_chr5_160004139_160070543	1/1	t0001	563	317	76	50	143	10	36	copy fasta	TTC1	chr5	160004139	160070543
TTC1_chr5_160004139_160070543	0/0	t0002	563	62	1	14	43	2	2	copy fasta	TTC1	chr5	160004139	160070543
TTC1_chr5_160004139_160070543	0/0	t0003	563	1	1	0	0	0	0	copy fasta	TTC1	chr5	160004139	160070543
TTC1_chr5_160004139_160070543	0/0	t0004	563	1	0	0	1	0	0	copy fasta	TTC1	chr5	160004139	160070543
TTC1_chr5_160004139_160070543	0/0	t0005	563	1	1	0	0	0	0	copy fasta	TTC1	chr5	160004139	160070543
TTC1_chr5_160004139_160070543	0/0	t0006	563	1	1	0	0	0	0	copy fasta	TTC1	chr5	160004139	160070543
TTC1_chr5_160004139_160070543	0/0	t0007	563	1	0	0	1	0	0	copy fasta	TTC1	chr5	160004139	160070543
TTC21A_chr3_39102680_39143900	1/1	t0001	271	186	23	42	90	7	22	copy fasta	TTC21A	chr3	39102680	39143900
TTC21A_chr3_39102680_39143900	0/0	t0002	271	129	56	17	43	4	9	copy fasta	TTC21A	chr3	39102680	39143900
TTC21A_chr3_39102680_39143900	0/0	t0003	271	44	14	2	27	0	1	copy fasta	TTC21A	chr3	39102680	39143900
TTC21A_chr3_39102680_39143900	0/0	t0004	271	33	3	11	16	1	2	copy fasta	TTC21A	chr3	39102680	39143900
TTC21B_chr2_165868362_165958776	1/0	t0001	1465	245	48	47	122	4	23	copy fasta	TTC21B	chr2	165868362	165958776
TTC21B_chr2_165868362_165958776	0/0	t0002	1465	49	1	13	24	1	10	copy fasta	TTC21B	chr2	165868362	165958776
TTC21B_chr2_165868362_165958776	0/0	t0003	1465	33	23	1	8	0	1	copy fasta	TTC21B	chr2	165868362	165958776
TTC21B_chr2_165868362_165958776	0/1	t0004	1465	27	4	6	12	1	3	copy fasta	TTC21B	chr2	165868362	165958776
TTC21B_chr2_165868362_165958776	0/0	t0005	1465	9	9	0	0	0	0	copy fasta	TTC21B	chr2	165868362	165958776
TTC21B_chr2_165868362_165958776	0/0	t0006	1465	9	0	0	9	0	0	copy fasta	TTC21B	chr2	165868362	165958776
TTC21B_chr2_165868362_165958776	0/0	t0007	1465	8	0	2	6	0	0	copy fasta	TTC21B	chr2	165868362	165958776
TTC21B_chr2_165868362_165958776	0/0	t0008	1465	7	2	3	0	1	1	copy fasta	TTC21B	chr2	165868362	165958776
TTC21B_chr2_165868362_165958776	0/0	t0009	1465	4	0	0	4	0	0	copy fasta	TTC21B	chr2	165868362	165958776
TTC21B_chr2_165868362_165958776	0/0	t0010	1465	3	1	1	0	1	0	copy fasta	TTC21B	chr2	165868362	165958776
TTC21B_chr2_165868362_165958776	0/0	t0011	1465	3	3	0	0	0	0	copy fasta	TTC21B	chr2	165868362	165958776
TTC21B_chr2_165868362_165958776	0/0	t0012	1465	2	0	0	2	0	0	copy fasta	TTC21B	chr2	165868362	165958776
TTC21B_chr2_165868362_165958776	0/0	t0013	1465	1	0	0	1	0	0	copy fasta	TTC21B	chr2	165868362	165958776
TTC21B_chr2_165868362_165958776	0/0	t0014	1465	1	0	0	1	0	0	copy fasta	TTC21B	chr2	165868362	165958776
TTC21B_chr2_165868362_165958776	0/0	t0015	1465	1	1	0	0	0	0	copy fasta	TTC21B	chr2	165868362	165958776
TTC21B_chr2_165868362_165958776	0/0	t0016	1465	1	1	0	0	0	0	copy fasta	TTC21B	chr2	165868362	165958776
TTC21B_chr2_165868362_165958776	0/0	t0017	1465	1	0	1	0	0	0	copy fasta	TTC21B	chr2	165868362	165958776
TTC21B_chr2_165868362_165958776	0/0	t0018	1465	1	1	0	0	0	0	copy fasta	TTC21B	chr2	165868362	165958776
TTC21B_chr2_165868362_165958776	0/0	t0019	1465	1	0	0	1	0	0	copy fasta	TTC21B	chr2	165868362	165958776
TTC21B_chr2_165868362_165958776	0/0	t0020	1465	1	0	0	1	0	0	copy fasta	TTC21B	chr2	165868362	165958776
TTC21B_chr2_165868362_165958776	0/0	t0021	1502	1	0	0	1	0	0	copy fasta	TTC21B	chr2	165868362	165958776
TTC22_chr1_54774712_54806323	1/0	t0001	1692	67	19	15	31	0	1	copy fasta	TTC22	chr1	54774712	54806323
TTC22_chr1_54774712_54806323	0/1	t0002	1692	57	2	8	37	1	8	copy fasta	TTC22	chr1	54774712	54806323
TTC22_chr1_54774712_54806323	0/0	t0003	1691	46	14	9	8	4	11	copy fasta	TTC22	chr1	54774712	54806323
TTC22_chr1_54774712_54806323	0/0	t0004	1690	38	3	0	28	0	7	copy fasta	TTC22	chr1	54774712	54806323
TTC22_chr1_54774712_54806323	0/0	t0005	1690	38	3	0	32	0	3	copy fasta	TTC22	chr1	54774712	54806323
TTC22_chr1_54774712_54806323	0/0	t0006	1692	24	8	11	0	5	0	copy fasta	TTC22	chr1	54774712	54806323